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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0231400 |
| Transcript ID | LotjaGi6g1v0231400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Translation machinery-associated protein 22; TAIR: AT5G11900.1 Translation initiation factor SUI1 family protein; Swiss-Prot: sp|O42929|DENR_SCHPO Translation machinery-associated protein 22; TrEMBL-Plants: tr|I3SCA3|I3SCA3_LOTJA Translation machinery-associated protein 22; Found in the gene: LotjaGi6g1v0231400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54010706..54014216) extracted from Lotus japonicus Gifu genome v1.2.
CAAGCAAAACAATTAGCAAAGTGCTTTACAATCCCATCACCCCTCCTCCACCGCGCTTCACAAAACACACAATCTTTCTC TTAACTCAACACCTGCGTCGTCAAAACGCACCGTTTCACTGTTACCGCCGCCGCGAAAGGGTTTGAACCAGGCGAAGCCG CCGGCGATAGAAGAAGGTTGAACCTCGTTCCGTCGTGTTGCTCCACAAACACCAATGGCAGAGAAACCGCAACCGGTTCG TGTACAGTACTGCCAGGTTTGCAGTTTGCCCCCTGAATACTGCGAATTCGGATCCGATTTCGAGAAATGCAAACCCTGGT TGATCCAAAACGCTCCTCACGTTTACCCTGATCTCGTTAATGGTTGGTATCTATAAACCTCTTCTCACTTTCTCACTTTT TTTCAATTTTTTTTTTGCTTAATGTTGATTCTGAATGCGATTCATCATCATTGTTGTTAATATTGTGCAGAGGCAAATGC TAAGGATGCTGATAAAGTTGCTGACAAGCTACAAAGTACTGGTTTATCTTCTGGGGCTGGTGATGGAGCTGCTTCCTCAG GTTTTTATTTTTTTATTTTTTTCATAATTATTTTTCTTATGAGATTTTTGTTGAAGAATGTGAAGATTCTGTTAATTTCA GACCTGAGTTTTTTTCAGCATTTTATTATATGAAGTTTAAGTGATTTAGAATTGAACTTTGTTTTTCTTTTTCCCTAATT GTTGCAAATTGGTTAGTATTCAATTCCTTGTTTTGATGTTTTAGCGCCGAAGCAAGAAGAGGTGAAACGTCTACCTGGTG GGAAGATTAAGAAAAAGGCATGTCGTGGAATTCTTTCCCGCGCTTTTGAATTAAGCACACTTATTATTTGATGCTAGATG TCATAAGTTCCGGTTTCGTGGTATGATTGGAAGTGGTGTTGTTTTTGTTTCAGGATAAGCAAGAGGTTGTGATTGAGAAG GTCGTTCGTAATAAACGCAAGTCTATCACCACCGTGAAAGGCCTGGAACTTTTTGGTGAGATATATTTTTCATTCTCTTT TGCATTGTTCGGATATCTAATGATAGGGTTAATGAAATGAAATGATAGGATGGAAAGAAATATAGGAATATAATTATTAC GTCATTGTTTAGATATTTTATGATGAAATTGAGGATAGTTTCAATTCCATTGTCTGGGTGGAACTAAATGGAACGATAAG CTATGAAGCGTGGATATAGACAAAGATACTAGATACGGCACCAACACGAGTAGAACAACAGAGTCAAGTTCTTAAATTAC ATATATACGGAACTAATAGTTGGCATGAAAGGAGTTAATCTCAATATATGTTGTTGAATGATCAAGATTACCTTCCCTTG GGTGCATGTGCTTACGTGGTATGCCTCTTAAATACATACATGTGTGGGGGTATAGGATGAACGGGAAACAAAACAACATT CCCAATGACGTGCGTTTTAGATTTTTCCTAATATTTTTAAGTTTTAACTACCATTGTACTAATTTTTTATTTTAAGTTGA CTTTTTTGAAAGTTAATTTTGTAACATTTTTTATATAAAAAAGCTCTGTATACTTCAAGTGTCAGGCCATAGGCGAGTCA TGAGTGTCGACTAAGTGGCCAAAAGGTATCTGGTGGGTGTCCAAGCCAATAAACAATATTGTTTTAATTCAGCACTTGGT GAGGAGTGTTTGACATGTCTGGCACAAGTGTCGTATGGGTCTTAGACTCTTTGTGTCAGAAACACATTTGACACTCCAAC ACCTTAAGAAGAAGTGTCTGTAATTCATAGATGATAAGAAGATTAATAAACATAAGTTAAATCCATCTCACTTTTCCCGA ATTGATTGGAGAGATAAAAGTTTGGGTGAAATGTGAGGGAATAGTTTCTATTAGGTTCTTTTCATTCAATCCTAAATAAT CCATTTCATCCCTTTTTTAGTAATCCAAGGTTAGCCTTAAGTTGTCATTGTTCGTTATGACATTGCCTAGGTATTTTTGG TATTTAACTCAGTTTTCTTAATTGTATTTCAGGTGTCAAGCTCAGTGATGCTTCAAAGAAACTTGGGAAAAAGTTTGCTA CAGGAGCATCTGTTGTCAAGGTTTATTAGCTTTTCTATTGTGGACTTGTATAATTGTTTGGATATAATGTCTTATAATAC TCTGAATTTATTGGTGTCAGGGCCCAACTGAGAAAGAGCAAATTGATGTTCAAGGGGATATATCTTTTGACATTGTGGAG TTTATTACAGATACATGGCCTGACGTAAGTTTTTGTGATTTTTATTGTTATTATGAGTTTATAATCTGATTTAATAAGTA TTTCTGGAAACCATTGGAAGAAGCAATTAAAAAAGTTATGTTGACATGTTTCAGTAATATAATTTCTGTTCTAATTTGCT TATTCATCTGTGAAAGAGAGAGAGAGAGAGTAGTGGATGTTTTAGTATGGTTAAACCATTGAAGAAACTCGTCTCATGGA AAATGTGTCGTTTAAAGTGGGAACTTGTCTTCGCAACCAGCCTATGTGATTTATGGAACATTTCATCTACCATACAATTG CTGGTTGGAGCAAACATGTTTTACTTGTAACATTTATCCTTTTTCCTTTAGCTAACAAAGTCTATTGTAACTTTTATTGT GTTAATCTATTAGTATTAGATCTCATAAAAGACATGAGGGAGTGAGTAGGTACTCCATCGGCTAGGGTTCTTTGTCTAAT TGATATAAGTGAGGATCTGTGTTAGCGAATTGAGCCAAATGTATCTGCTTTGTCTATGCTGTGCTGTCATGCCAATTGTT CTTTATAAATGCAAATAGGTACTTCCTCACAATTGGCCAAGAATATAGAATTTCGATATAATTGACAATCTTTCCTCCTC CTGCAGGTTCCAGAGTCAGCAATTTTCTTCATAGAAGATGGGAGAAAGGTTCCAGCTGCTTGATTTTGAAATCCTACAAT AAGAAGACTGTGGACTGATGGCTAGAGTCAGCTATTTTTCTGTACTTTGTGAAGGCTGATAGACTTAGTAGATGTTTTAA CACTATTTAGCCATTGAAGTCCCCCCACCCCCAAATCTTCTCTCGAAAAATAGTGTGCATGATCCCGGATAGACATCATC ATATGTATTTTCGGTTACAAAATTGTTTACTTAATGGTGTGCGTGTAGAGGCAAAGGGAGAAAGGGTTTGTTTGCTTCAT TTTTGCGCTTGCATGATCTAACCTGCCTTGCAGAATATAATGTGTTTTTGTCTGTCTGCTTCACCGAATGCTCATTTATC ATCATTTTTTTACTGGATCTGATTTCCAAGAATTTTTTTAACCATAGAACTGTAAGACCTATGATATTGTATGGGACTGA ATGTAGGACAATATAGTGAATTCAGTGTCATGAATTTAAGTGTTACAGCAATGGTCTAAACATGTAGTTATTAAAAGAAA GTAAGGTATCTCTTATGTAAACAAACATTGAACCATCTCATCCTTAGAGGTTTGGGTTAGGGTTATATTTA
CDS sequence (LotjaGi6g1v0231400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAGAAACCGCAACCGGTTCGTGTACAGTACTGCCAGGTTTGCAGTTTGCCCCCTGAATACTGCGAATTCGGATC CGATTTCGAGAAATGCAAACCCTGGTTGATCCAAAACGCTCCTCACGTTTACCCTGATCTCGTTAATGAGGCAAATGCTA AGGATGCTGATAAAGTTGCTGACAAGCTACAAAGTACTGGTTTATCTTCTGGGGCTGGTGATGGAGCTGCTTCCTCAGCG CCGAAGCAAGAAGAGGTGAAACGTCTACCTGGTGGGAAGATTAAGAAAAAGGATAAGCAAGAGGTTGTGATTGAGAAGGT CGTTCGTAATAAACGCAAGTCTATCACCACCGTGAAAGGCCTGGAACTTTTTGGTGTCAAGCTCAGTGATGCTTCAAAGA AACTTGGGAAAAAGTTTGCTACAGGAGCATCTGTTGTCAAGGGCCCAACTGAGAAAGAGCAAATTGATGTTCAAGGGGAT ATATCTTTTGACATTGTGGAGTTTATTACAGATACATGGCCTGACGTTCCAGAGTCAGCAATTTTCTTCATAGAAGATGG GAGAAAGGTTCCAGCTGCTTGA
Protein sequence (LotjaGi6g1v0231400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEKPQPVRVQYCQVCSLPPEYCEFGSDFEKCKPWLIQNAPHVYPDLVNEANAKDADKVADKLQSTGLSSGAGDGAASSA PKQEEVKRLPGGKIKKKDKQEVVIEKVVRNKRKSITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGD ISFDIVEFITDTWPDVPESAIFFIEDGRKVPAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 193 | 193 | 1.2E-105 | – | |
| PANTHER | 1 | 193 | 193 | 1.2E-105 | – | |
| TIGRFAM | 7 | 182 | 176 | 1.1E-52 | ||
| SUPERFAMILY | 19 | 184 | 166 | 1.16E-28 | ||
| MobiDBLite | 62 | 93 | 32 | - | – | |
| Gene3D | 74 | 180 | 107 | 4.7E-24 | – | |
| Pfam | 99 | 172 | 74 | 1.7E-19 | ||
| CDD | 100 | 185 | 86 | 7.24038E-42 | – | |
| ProSiteProfiles | 102 | 173 | 72 | 19.024 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of LotjaGi6g1v0231400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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