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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0232200 |
| Transcript ID | LotjaGi6g1v0232200.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-galactosidase; TAIR: AT3G13750.1 beta galactosidase 1; Swiss-Prot: sp|P48981|BGAL_MALDO Beta-galactosidase; TrEMBL-Plants: tr|V7AYU3|V7AYU3_PHAVU Beta-galactosidase; Found in the gene: LotjaGi6g1v0232200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54105456..54111190) extracted from Lotus japonicus Gifu genome v1.2.
GCAGGTTCAAGAATTTTGATCATGATGGAGAGTTTAATGAGGAGGAGCAAGTTTCATGTGTTGGTGTTTATGTTGTTCTG TTCATGGTTTTGTTATGTCACTGCCTCTGTGACTTATGATCACAAAGCCATTCTGGTTGATGGAAAGAGAAGAATTTTGA TCTCTGGTTCCATCCACTACCCAAGAAGCACCCCTCAGGTGCTCACTTCACTACTTATCCAACATGCTACATCAAATTGT TTCCTCATTCATTTCTTACATTTTTTTTTTTGTATTCATTCATAATCATGTAATGCATGCCCTAAAGGCACATTGTTTGA GCATATCAAATGTGTTTCTTATTGCAGATGTGGCCAGACTTAATCCAAAAGGCCAAAGATGGAGGCATTGATGTTATTCA GACCTATGTGTTTTGGAATGGACATGAACCTTCTCCTGGAAATGTAATGTTAATAAATTTCCTCAATTTTTACTTTTTAT GGTTTATTTTTCATACCCTTTATTGTTTTTATTTTCCTTGTAACTCATTGAAGTTGTTCAAAATTTTCAGTATTATTTTG AAGATAGATTTGATCTGGTTAAGTTCATCAAGATAGTGCAGCAAGCTGGCCTTTATGTTAATCTTCGAATTGGTCCCTAC GTTTGTGCTGAATGGAACTTTGGGTAATGATTTCAATAATGTTCTTATACAGAGGAAAATTCTTAGGAAAAAAGAAAACA ATTCTTTGTAATCACTCAAAGCTGACACACATGCTCTGTTCTGTATTCAGGGGATTTCCTGTTTGGCTCAAGTATGTTCC AGGTATTGCTTTCAGAACAGACAATGGGCCGTTCAAGGTTGGTGTTTTCATCAACTCTATTATTTCTTTACATTATTGAT CATAAAATTTAATGAACTTTCTAACTAAACCTCCAATTTTTGTCATGATGTATGTAAGGCGGCTATGCAAAAATTCACTA CAAAGATTGTCAACATGATGAAAGCAGAGAAGTTGTTTCAAACTCAGGGTGGTCCAATAATTATGTCTCAGGTAAATAAA TGGGTTTTAATTTTAAATATGTTATTTTAGTAATTATTTTCTGAGCTAATTATAATTTTTTTTGAACTCAGCTAATTATA ATTATGATTATGCATTAATTTAGTATTAAGAAGAAAAAAAAAACTAATTCAATTGACAGATAGAGAATGAGTATGGACCA GTGGAATGGGAAACTGGTGCTCCTGGGAAGGCTTACACCAAATGGGCTGCTCAAATGGCTGTAGGTCTAAATACTGGGGT CCCTTGGATTATGTGCAAGCAAGAAGATGCCCCTGATCCTCTTGTAAGCTACTCTTCCTTTATCCTCACAAAAATGCTTA TCCTGTTCTGTTTAATTTATTGTGGTGTGGTGGGGTTTATTTGCAACAATGTTATGCTTATCTTTGTTGGGTTGTTGTTC CTTTTTACTATACCATGAATTTTTCTGTTTTCCCATAACCATAAATCCATTTTGACCTTTTTTTCACTATTGTGTTTAAC CTTGATTTGGAGGAAGGTGTTTTGGCTTACCTAAGCAGCTCTATTGTCTTCTCCACCTTTCTCTTGCTTTTCTAGGTTGT TCTATACTTGCAGTACTTGACATGCTTTTGTCTCTTTCACTTTTTGCTTTTTAAGAAAAAGAAAATCAGAGAAAGTGTCA AGACTTGATTTCAATTGAATCTTCTCCCTTGCATCTTTTTTTTCTCTCTGATCTGTATTTACTGACTGTTCTGTAGATTG ACACTTGCAATGCATACTACTGTGAAAAGTTCACCCCCAACAAAAATTACAAACCCAAGATGTGGACTGAGAATTGGACT GGCTGGTAAGTGATACAAATGCTACCTTTAGGTCTGAAAGTATTTTTGTTCTGAGGTCGAATGTTCGATCCTTTGAAACT AACTTCAATCGTAGGGAGAGTTTTGTCCTTCACCACACCCGGGTCAGAATTGCGAGAGAAATTTAATACACCAAAATTAT TGAGTTTTGTGTTTTGCATTCTGTAGGTACACTGATTATGGTAGTCCAGTCCCTCGTAGACCGGCAGAAGACATGGCATT CTCAGTTGCAAGATTCATACAGAATGGTGGCTCATTTGTTAACTACTATATGGTATGTTGGCCATCTCCACCATAGTGAA TACTTTCCTACACTGTGTGCAATACAAATTCATGTTTTAGAAACTTTGATTTGAGTCTAATATCTTTTTTTTTTGTCCAG TACCATGGAGGAACGAATTTTGGCCGAACGTCGAGTGGTCTCTTCATTGCCACAAGCTATGAGTATGATGCTCCCATTGA TGAATATGGTATGTAGTATGTTAATGATAGCAATTACACACATTTAAGGCTTTTCAAAACATTAGGAAGCTTTTGGCTTG AGTAAAAGAAAAAAGTGATAATTCTTTTTCCTAGCAAAGTGCATAAATTCACTTTATGCATGTCTGAAACCTTCTACAAT TGATTCTGAACCTGAATCAATTTCGGGTCTGATGAAAGAGAAGTTGATCCAAATATACTGACATCACATGGATAGATGCA TTTTCACATTAGCTTGAATCTTGTTCAATTGTATCATTACTATACCAGGACTGCTAAATGAACCAAAATGGGGGCACTTG AGAGATTTGCACAAAGCAATAAAACAATGCGAGCCGGCTTTAGTGTCTGTGGATCCAACGTTGACATTACTTGGAAAGGG CCTTGAGGTGAAGTCCATGAGCTGGTTTTTGACAAAAATAAAACCAAATTGCGACTGTTGAAAATTCACTTGCTTCTTTT TGTTAATATAATCACAGGCACATGTTTTCAAGACAAGCTTTGGCGCTTGTGCTGCATTCCTTGCAAATTATGACACCACA TCTTCCAGAACAGTTAAATTTGGAAATGGGCAATACAACCTGCCCCCTTGGTCTATCAGTATTCTTCCTGACTGCAAAAC TGATGTTTACAACACTGCAAGGGTAATGTGTTAATAAGTTTTGCACTTTTATTTTGTTTAACGAAGGTACATATAGTGAA AACGTTTATGCTGAAATCAGCCTGTCTTTTCTTGATGGACAGACAACTATTGTGTTTAGGTAAGCAGCTTAATAAAACAC TTATGACAACATACGTTTATCGCATAAGCGCTTATTCATAAGTTAATTTGAAAATAAAAATATTAAAATAAACTCAAAAT AGATTATAGGTAGGTATAAGACTGTAAGCACTTATCCATATGGTAATGTGAGCAGCTTATGAAAATAAGCTCAAAACAGC TTATAGCTAGGTCATAAGCTATTTACGTTAGCTCTCTCAAACACTCGCATAAGCGCTTATGCTATAACATAAGCTCAAAT AAGCTCTATCAAACGGGTTTTAAGCAGAAACTTGTATTTACTACTCTATGAATTTTGAAGTATGGATATTCATACCTATT TCATGCAGGTTGGTGTCAAGAGCTGGGAAAAAAAGATGACTCCGGTGAATAGCGCATTCAATTGGCTGTCCTACAATGAA CAACCTGCCTCATCCAGTGGGGATGATTCCCTCACAGGTTATGCACTTTGGGAGCAGGTCAATGTGACCCGGGATTCTTC AGATTATCTGTGGTATATGACAGAGTAAGCATCTTTCACCTTATCAAACTTCTTAAAAAATTGGATGTCAATCTTTTGAG TTTTGAGCCTTCAGCCTCGAGACTTACTAATTTTATCCTCTCACTATTTAATCAATTTTGATATCCCTTTTTCAGTGTCA ACATTGATTCTAATGAAGGTTTTATAAAGAATGGCCAATCTCCTGTTCTTACCGCAATGTCAGCTGGCCATGTTCTGCAT GTTTTTGTTAACGGTCAACTTTCAGGTGAGTATGTCACTATGCCTGTTTTGGATTTATATTTTTTCATGATAAATTCGAA GTTTACATATCCGTCTCCTATATGAATCCAGGAACTGTGTATGGTGGATTGAAGAATCCTAAATTAACATTTAGTGACAG TGTGAAGCTGAGGGTTGGCAACAACAAGATTTCTTTACTTAGTGTATCCATCGGCCTCTCGGTTAGTTTTCTCTTCTAGT CTTCTGTATTTTCATTTTTAAGTAACACCTTATCTTTGCTGATAAGTAGAATTTTAATCTATTTTTGTATTCAATTAATA CCAGAATGTTGGCTCGCACTTTGAAACATGGAATGTTGGAGTGTTAGGACCGGTCACACTGAAGGGCCTAAATGAGGGCA CAAGAGATTTGTCTCGGCAGAAATGGTCTTACAAGGTTTGTTATCTAGTATACCTCACTGCTTACTAGGAACATTGAAAG GTTTTCTAAATGGTGGGTGTATATTGCCTAAAAATTCAGCAAACAAATTTATAAATGCTAAGGACAAGACTAAATGGTGA GATATTGTTAGGTAACAATATTGAAACTTGATCACCAATGAAGCAAAAGTTCATGTGAACCTAAACTTATGTGCCATTGT AGTATAGATAAGAATGCATATATCATTGAATTTAGGACTAATTAAATGCATCGTTGAGCAGATTTTAGGGCAAAAGTGTC AAGAGAATCAAATAAGAAAAAATTTATACTTATTTGTTTGTTTTTGCTTTCATATTAACACGTTTCATGTAATTTGGCAG GTTGGACTGAAAGGTGAAGCCTTGAACCTTCATACCACTAGTGGGAGTTCCTCTGTTCAATGGACACAAGGATCATTAGT GGCTAAAAAACAACCTTTGACATGGTACAAGGTAAGAATAATTTTTCACAAATGATGTATTTCTGTCACTATTATAGGTG TCACCTGATTCTGCATGAATTGCAACTCATTTTCTACTTCAATGCTGTCAGGCAACTTTTAACGCGCCGGCCAGCAACGA TCCGTTGGCTCTAGATATGACTAGCATGGGAAAGGGTGAAGTATGGATAAATGGCCAGAGCATCGGTCGCCATTGGCCTG GATATATAGCGCGCGGTAGTTGTGGTAGTTGTAATTATGCTGGATATTACACTGATACCAAATGCAGGACAAATTGTGGA GAACCCTCACAGAGATGGTAAGAAACTAAGAATTTATACAACTTACTTTACAGAAGCCAGTGCTATAAGTAATTGAATAT CATGAGAGCTTATTCTTGGTCTTCGTATAGGTACCATATTCCTCGCTCTTGGTTGAATCCAAGTGGGAACTTGGTGGTCG TGCTTGAAGAATTTGGAGGTGACCCTACTGGAATTTCTTTGGTGAAAAGAACATGAAGTGTGCTCATATGATGCATACTC AAATGGTATTTCACCTATTCCATTTTCTTCCATGCTGTCCTTGTTTAATTTCTTGCTATGTTCGCTGATATTCCTATTAA AATCCTCAGCCTGAATCCTTTGATATCTGTTGCATTTATGCTGCTGTTTCAGGAAAACAATTTAACTGCTGGATTTTCTT ATGTTTTCAAAAGTATCTTAATTAGTAATACTCACAATATTAATATTATTTGCACCTTTTATTTCATACTTTGTTTTCCT TGATCTCAAAACTATTATGGAAGCTTACAGAAGTCACTAGATATAGTTGATTTGGCTTTGAAACTATTCATTCTTTCTGT TATGATTCTCCAAAATGTTGTTATTCATCTCTCAATCTTTCTTGTAACTATTTGCTTCTGCTGCTTATTGTCCTAGTGGT CTTTCTGCAGAACTGCATTGGCAAGCAATATTTATCTTATTACCTGTGTGACTAG
CDS sequence (LotjaGi6g1v0232200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGAGTTTAATGAGGAGGAGCAAGTTTCATGTGTTGGTGTTTATGTTGTTCTGTTCATGGTTTTGTTATGTCAC TGCCTCTGTGACTTATGATCACAAAGCCATTCTGGTTGATGGAAAGAGAAGAATTTTGATCTCTGGTTCCATCCACTACC CAAGAAGCACCCCTCAGATGTGGCCAGACTTAATCCAAAAGGCCAAAGATGGAGGCATTGATGTTATTCAGACCTATGTG TTTTGGAATGGACATGAACCTTCTCCTGGAAATTATTATTTTGAAGATAGATTTGATCTGGTTAAGTTCATCAAGATAGT GCAGCAAGCTGGCCTTTATGTTAATCTTCGAATTGGTCCCTACGTTTGTGCTGAATGGAACTTTGGGGGATTTCCTGTTT GGCTCAAGTATGTTCCAGGTATTGCTTTCAGAACAGACAATGGGCCGTTCAAGGCGGCTATGCAAAAATTCACTACAAAG ATTGTCAACATGATGAAAGCAGAGAAGTTGTTTCAAACTCAGGGTGGTCCAATAATTATGTCTCAGATAGAGAATGAGTA TGGACCAGTGGAATGGGAAACTGGTGCTCCTGGGAAGGCTTACACCAAATGGGCTGCTCAAATGGCTGTAGGTCTAAATA CTGGGGTCCCTTGGATTATGTGCAAGCAAGAAGATGCCCCTGATCCTCTTATTGACACTTGCAATGCATACTACTGTGAA AAGTTCACCCCCAACAAAAATTACAAACCCAAGATGTGGACTGAGAATTGGACTGGCTGGTACACTGATTATGGTAGTCC AGTCCCTCGTAGACCGGCAGAAGACATGGCATTCTCAGTTGCAAGATTCATACAGAATGGTGGCTCATTTGTTAACTACT ATATGTACCATGGAGGAACGAATTTTGGCCGAACGTCGAGTGGTCTCTTCATTGCCACAAGCTATGAGTATGATGCTCCC ATTGATGAATATGGACTGCTAAATGAACCAAAATGGGGGCACTTGAGAGATTTGCACAAAGCAATAAAACAATGCGAGCC GGCTTTAGTGTCTGTGGATCCAACGTTGACATTACTTGGAAAGGGCCTTGAGGCACATGTTTTCAAGACAAGCTTTGGCG CTTGTGCTGCATTCCTTGCAAATTATGACACCACATCTTCCAGAACAGTTAAATTTGGAAATGGGCAATACAACCTGCCC CCTTGGTCTATCAGTATTCTTCCTGACTGCAAAACTGATGTTTACAACACTGCAAGGGTTGGTGTCAAGAGCTGGGAAAA AAAGATGACTCCGGTGAATAGCGCATTCAATTGGCTGTCCTACAATGAACAACCTGCCTCATCCAGTGGGGATGATTCCC TCACAGGTTATGCACTTTGGGAGCAGGTCAATGTGACCCGGGATTCTTCAGATTATCTGTGGTATATGACAGATGTCAAC ATTGATTCTAATGAAGGTTTTATAAAGAATGGCCAATCTCCTGTTCTTACCGCAATGTCAGCTGGCCATGTTCTGCATGT TTTTGTTAACGGTCAACTTTCAGGAACTGTGTATGGTGGATTGAAGAATCCTAAATTAACATTTAGTGACAGTGTGAAGC TGAGGGTTGGCAACAACAAGATTTCTTTACTTAGTGTATCCATCGGCCTCTCGAATGTTGGCTCGCACTTTGAAACATGG AATGTTGGAGTGTTAGGACCGGTCACACTGAAGGGCCTAAATGAGGGCACAAGAGATTTGTCTCGGCAGAAATGGTCTTA CAAGGTTGGACTGAAAGGTGAAGCCTTGAACCTTCATACCACTAGTGGGAGTTCCTCTGTTCAATGGACACAAGGATCAT TAGTGGCTAAAAAACAACCTTTGACATGGTACAAGGCAACTTTTAACGCGCCGGCCAGCAACGATCCGTTGGCTCTAGAT ATGACTAGCATGGGAAAGGGTGAAGTATGGATAAATGGCCAGAGCATCGGTCGCCATTGGCCTGGATATATAGCGCGCGG TAGTTGTGGTAGTTGTAATTATGCTGGATATTACACTGATACCAAATGCAGGACAAATTGTGGAGAACCCTCACAGAGAT GGTACCATATTCCTCGCTCTTGGTTGAATCCAAGTGGGAACTTGGTGGTCGTGCTTGAAGAATTTGGAGGTGACCCTACT GGAATTTCTTTGGTGAAAAGAACATGA
Protein sequence (LotjaGi6g1v0232200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMESLMRRSKFHVLVFMLFCSWFCYVTASVTYDHKAILVDGKRRILISGSIHYPRSTPQMWPDLIQKAKDGGIDVIQTYV FWNGHEPSPGNYYFEDRFDLVKFIKIVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYVPGIAFRTDNGPFKAAMQKFTTK IVNMMKAEKLFQTQGGPIIMSQIENEYGPVEWETGAPGKAYTKWAAQMAVGLNTGVPWIMCKQEDAPDPLIDTCNAYYCE KFTPNKNYKPKMWTENWTGWYTDYGSPVPRRPAEDMAFSVARFIQNGGSFVNYYMYHGGTNFGRTSSGLFIATSYEYDAP IDEYGLLNEPKWGHLRDLHKAIKQCEPALVSVDPTLTLLGKGLEAHVFKTSFGACAAFLANYDTTSSRTVKFGNGQYNLP PWSISILPDCKTDVYNTARVGVKSWEKKMTPVNSAFNWLSYNEQPASSSGDDSLTGYALWEQVNVTRDSSDYLWYMTDVN IDSNEGFIKNGQSPVLTAMSAGHVLHVFVNGQLSGTVYGGLKNPKLTFSDSVKLRVGNNKISLLSVSIGLSNVGSHFETW NVGVLGPVTLKGLNEGTRDLSRQKWSYKVGLKGEALNLHTTSGSSSVQWTQGSLVAKKQPLTWYKATFNAPASNDPLALD MTSMGKGEVWINGQSIGRHWPGYIARGSCGSCNYAGYYTDTKCRTNCGEPSQRWYHIPRSWLNPSGNLVVVLEEFGGDPT GISLVKRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| TMHMM | 13 | 32 | 20 | - | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| PANTHER | 13 | 728 | 716 | 0.0 | ||
| PANTHER | 13 | 728 | 716 | 0.0 | – | |
| Phobius | 25 | 28 | 4 | - | – | |
| Gene3D | 26 | 346 | 321 | 4.6E-112 | – | |
| SUPERFAMILY | 29 | 346 | 318 | 6.95E-105 | ||
| Phobius | 29 | 728 | 700 | - | – | |
| Pfam | 37 | 341 | 305 | 2.0E-115 | ||
| PRINTS | 40 | 57 | 18 | 3.1E-84 | ||
| PRINTS | 61 | 79 | 19 | 3.1E-84 | ||
| PRINTS | 116 | 135 | 20 | 3.1E-84 | ||
| PRINTS | 173 | 188 | 16 | 3.1E-84 | ||
| ProSitePatterns | 175 | 187 | 13 | - | ||
| PRINTS | 252 | 267 | 16 | 3.1E-84 | ||
| PRINTS | 289 | 304 | 16 | 3.1E-84 | ||
| PRINTS | 309 | 325 | 17 | 3.1E-84 | ||
| Pfam | 349 | 420 | 72 | 2.3E-24 | ||
| SUPERFAMILY | 404 | 574 | 171 | 6.66E-25 | ||
| SUPERFAMILY | 584 | 724 | 141 | 2.31E-27 | ||
| Gene3D | 588 | 728 | 141 | 1.7E-13 | ||
| PRINTS | 619 | 633 | 15 | 3.1E-84 | ||
| PRINTS | 646 | 662 | 17 | 3.1E-84 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0232200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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