Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi6g1v0232200 |
Transcript ID | LotjaGi6g1v0232200.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Beta-galactosidase; TAIR: AT3G13750.1 beta galactosidase 1; Swiss-Prot: sp|P48981|BGAL_MALDO Beta-galactosidase; TrEMBL-Plants: tr|V7AYU3|V7AYU3_PHAVU Beta-galactosidase; Found in the gene: LotjaGi6g1v0232200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54105935..54111172) extracted from Lotus japonicus Gifu genome v1.2.
ATCATGATGGAGAGTTTAATGAGGAGGAGCAAGTTTCATGTGTTGGTGTTTATGTTGTTCTGTTCATGGTTTTGTTATGT CACTGCCTCTGTGACTTATGATCACAAAGCCATTCTGGTTGATGGAAAGAGAAGAATTTTGATCTCTGGTTCCATCCACT ACCCAAGAAGCACCCCTCAGGTGCTCACTTCACTACTTATCCAACATGCTACATCAAATTGTTTCCTCATTCATTTCTTA CATTTTTTTTTTTGTATTCATTCATAATCATGTAATGCATGCCCTAAAGGCACATTGTTTGAGCATATCAAATGTGTTTC TTATTGCAGATGTGGCCAGACTTAATCCAAAAGGCCAAAGATGGAGGCATTGATGTTATTCAGACCTATGTGTTTTGGAA TGGACATGAACCTTCTCCTGGAAATGTAATGTTAATAAATTTCCTCAATTTTTACTTTTTATGGTTTATTTTTCATACCC TTTATTGTTTTTATTTTCCTTGTAACTCATTGAAGTTGTTCAAAATTTTCAGTATTATTTTGAAGATAGATTTGATCTGG TTAAGTTCATCAAGATAGTGCAGCAAGCTGGCCTTTATGTTAATCTTCGAATTGGTCCCTACGTTTGTGCTGAATGGAAC TTTGGGTAATGATTTCAATAATGTTCTTATACAGAGGAAAATTCTTAGGAAAAAAGAAAACAATTCTTTGTAATCACTCA AAGCTGACACACATGCTCTGTTCTGTATTCAGGGGATTTCCTGTTTGGCTCAAGTATGTTCCAGGTATTGCTTTCAGAAC AGACAATGGGCCGTTCAAGGTTGGTGTTTTCATCAACTCTATTATTTCTTTACATTATTGATCATAAAATTTAATGAACT TTCTAACTAAACCTCCAATTTTTGTCATGATGTATGTAAGGCGGCTATGCAAAAATTCACTACAAAGATTGTCAACATGA TGAAAGCAGAGAAGTTGTTTCAAACTCAGGGTGGTCCAATAATTATGTCTCAGGTAAATAAATGGGTTTTAATTTTAAAT ATGTTATTTTAGTAATTATTTTCTGAGCTAATTATAATTTTTTTTGAACTCAGCTAATTATAATTATGATTATGCATTAA TTTAGTATTAAGAAGAAAAAAAAAACTAATTCAATTGACAGATAGAGAATGAGTATGGACCAGTGGAATGGGAAACTGGT GCTCCTGGGAAGGCTTACACCAAATGGGCTGCTCAAATGGCTGTAGGTCTAAATACTGGGGTCCCTTGGATTATGTGCAA GCAAGAAGATGCCCCTGATCCTCTTGTAAGCTACTCTTCCTTTATCCTCACAAAAATGCTTATCCTGTTCTGTTTAATTT ATTGTGGTGTGGTGGGGTTTATTTGCAACAATGTTATGCTTATCTTTGTTGGGTTGTTGTTCCTTTTTACTATACCATGA ATTTTTCTGTTTTCCCATAACCATAAATCCATTTTGACCTTTTTTTCACTATTGTGTTTAACCTTGATTTGGAGGAAGGT GTTTTGGCTTACCTAAGCAGCTCTATTGTCTTCTCCACCTTTCTCTTGCTTTTCTAGGTTGTTCTATACTTGCAGTACTT GACATGCTTTTGTCTCTTTCACTTTTTGCTTTTTAAGAAAAAGAAAATCAGAGAAAGTGTCAAGACTTGATTTCAATTGA ATCTTCTCCCTTGCATCTTTTTTTTCTCTCTGATCTGTATTTACTGACTGTTCTGTAGATTGACACTTGCAATGCATACT ACTGTGAAAAGTTCACCCCCAACAAAAATTACAAACCCAAGATGTGGACTGAGAATTGGACTGGCTGGTAAGTGATACAA ATGCTACCTTTAGGTCTGAAAGTATTTTTGTTCTGAGGTCGAATGTTCGATCCTTTGAAACTAACTTCAATCGTAGGGAG AGTTTTGTCCTTCACCACACCCGGGTCAGAATTGCGAGAGAAATTTAATACACCAAAATTATTGAGTTTTGTGTTTTGCA TTCTGTAGGTACACTGATTATGGTAGTCCAGTCCCTCGTAGACCGGCAGAAGACATGGCATTCTCAGTTGCAAGATTCAT ACAGAATGGTGGCTCATTTGTTAACTACTATATGGTATGTTGGCCATCTCCACCATAGTGAATACTTTCCTACACTGTGT GCAATACAAATTCATGTTTTAGAAACTTTGATTTGAGTCTAATATCTTTTTTTTTTGTCCAGTACCATGGAGGAACGAAT TTTGGCCGAACGTCGAGTGGTCTCTTCATTGCCACAAGCTATGAGTATGATGCTCCCATTGATGAATATGGTATGTAGTA TGTTAATGATAGCAATTACACACATTTAAGGCTTTTCAAAACATTAGGAAGCTTTTGGCTTGAGTAAAAGAAAAAAGTGA TAATTCTTTTTCCTAGCAAAGTGCATAAATTCACTTTATGCATGTCTGAAACCTTCTACAATTGATTCTGAACCTGAATC AATTTCGGGTCTGATGAAAGAGAAGTTGATCCAAATATACTGACATCACATGGATAGATGCATTTTCACATTAGCTTGAA TCTTGTTCAATTGTATCATTACTATACCAGGACTGCTAAATGAACCAAAATGGGGGCACTTGAGAGATTTGCACAAAGCA ATAAAACAATGCGAGCCGGCTTTAGTGTCTGTGGATCCAACGTTGACATTACTTGGAAAGGGCCTTGAGGTGAAGTCCAT GAGCTGGTTTTTGACAAAAATAAAACCAAATTGCGACTGTTGAAAATTCACTTGCTTCTTTTTGTTAATATAATCACAGG CACATGTTTTCAAGACAAGCTTTGGCGCTTGTGCTGCATTCCTTGCAAATTATGACACCACATCTTCCAGAACAGTTAAA TTTGGAAATGGGCAATACAACCTGCCCCCTTGGTCTATCAGTATTCTTCCTGACTGCAAAACTGATGTTTACAACACTGC AAGGGTAATGTGTTAATAAGTTTTGCACTTTTATTTTGTTTAACGAAGGTACATATAGTGAAAACGTTTATGCTGAAATC AGCCTGTCTTTTCTTGATGGACAGACAACTATTGTGTTTAGGTAAGCAGCTTAATAAAACACTTATGACAACATACGTTT ATCGCATAAGCGCTTATTCATAAGTTAATTTGAAAATAAAAATATTAAAATAAACTCAAAATAGATTATAGGTAGGTATA AGACTGTAAGCACTTATCCATATGGTAATGTGAGCAGCTTATGAAAATAAGCTCAAAACAGCTTATAGCTAGGTCATAAG CTATTTACGTTAGCTCTCTCAAACACTCGCATAAGCGCTTATGCTATAACATAAGCTCAAATAAGCTCTATCAAACGGGT TTTAAGCAGAAACTTGTATTTACTACTCTATGAATTTTGAAGTATGGATATTCATACCTATTTCATGCAGGTTGGTGTCA AGAGCTGGGAAAAAAAGATGACTCCGGTGAATAGCGCATTCAATTGGCTGTCCTACAATGAACAACCTGCCTCATCCAGT GGGGATGATTCCCTCACAGGTTATGCACTTTGGGAGCAGGTCAATGTGACCCGGGATTCTTCAGATTATCTGTGGTATAT GACAGAGTAAGCATCTTTCACCTTATCAAACTTCTTAAAAAATTGGATGTCAATCTTTTGAGTTTTGAGCCTTCAGCCTC GAGACTTACTAATTTTATCCTCTCACTATTTAATCAATTTTGATATCCCTTTTTCAGTGTCAACATTGATTCTAATGAAG GTTTTATAAAGAATGGCCAATCTCCTGTTCTTACCGCAATGTCAGCTGGCCATGTTCTGCATGTTTTTGTTAACGGTCAA CTTTCAGGTGAGTATGTCACTATGCCTGTTTTGGATTTATATTTTTTCATGATAAATTCGAAGTTTACATATCCGTCTCC TATATGAATCCAGGAACTGTGTATGGTGGATTGAAGAATCCTAAATTAACATTTAGTGACAGTGTGAAGCTGAGGGTTGG CAACAACAAGATTTCTTTACTTAGTGTATCCATCGGCCTCTCGGTTAGTTTTCTCTTCTAGTCTTCTGTATTTTCATTTT TAAGTAACACCTTATCTTTGCTGATAAGTAGAATTTTAATCTATTTTTGTATTCAATTAATACCAGAATGTTGGCTCGCA CTTTGAAACATGGAATGTTGGAGTGTTAGGACCGGTCACACTGAAGGGCCTAAATGAGGGCACAAGAGATTTGTCTCGGC AGAAATGGTCTTACAAGGTTTGTTATCTAGTATACCTCACTGCTTACTAGGAACATTGAAAGGTTTTCTAAATGGTGGGT GTATATTGCCTAAAAATTCAGCAAACAAATTTATAAATGCTAAGGACAAGACTAAATGGTGAGATATTGTTAGGTAACAA TATTGAAACTTGATCACCAATGAAGCAAAAGTTCATGTGAACCTAAACTTATGTGCCATTGTAGTATAGATAAGAATGCA TATATCATTGAATTTAGGACTAATTAAATGCATCGTTGAGCAGATTTTAGGGCAAAAGTGTCAAGAGAATCAAATAAGAA AAAATTTATACTTATTTGTTTGTTTTTGCTTTCATATTAACACGTTTCATGTAATTTGGCAGGTTGGACTGAAAGGTGAA GCCTTGAACCTTCATACCACTAGTGGGAGTTCCTCTGTTCAATGGACACAAGGATCATTAGTGGCTAAAAAACAACCTTT GACATGGTACAAGGTAAGAATAATTTTTCACAAATGATGTATTTCTGTCACTATTATAGGTGTCACCTGATTCTGCATGA ATTGCAACTCATTTTCTACTTCAATGCTGTCAGGCAACTTTTAACGCGCCGGCCAGCAACGATCCGTTGGCTCTAGATAT GACTAGCATGGGAAAGGGTGAAGTATGGATAAATGGCCAGAGCATCGGTCGCCATTGGCCTGGATATATAGCGCGCGGTA GTTGTGGTAGTTGTAATTATGCTGGATATTACACTGATACCAAATGCAGGACAAATTGTGGAGAACCCTCACAGAGATGG TAAGAAACTAAGAATTTATACAACTTACTTTACAGAAGCCAGTGCTATAAGTAATTGAATATCATGAGAGCTTATTCTTG GTCTTCGTATAGGTACCATATTCCTCGCTCTTGGTTGAATCCAAGTGGGAACTTGGTGGTCGTGCTTGAAGAATTTGGAG GTGACCCTACTGGAATTTCTTTGGTGAAAAGAACATGA
CDS sequence (LotjaGi6g1v0232200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGAGTTTAATGAGGAGGAGCAAGTTTCATGTGTTGGTGTTTATGTTGTTCTGTTCATGGTTTTGTTATGTCAC TGCCTCTGTGACTTATGATCACAAAGCCATTCTGGTTGATGGAAAGAGAAGAATTTTGATCTCTGGTTCCATCCACTACC CAAGAAGCACCCCTCAGATGTGGCCAGACTTAATCCAAAAGGCCAAAGATGGAGGCATTGATGTTATTCAGACCTATGTG TTTTGGAATGGACATGAACCTTCTCCTGGAAATTATTATTTTGAAGATAGATTTGATCTGGTTAAGTTCATCAAGATAGT GCAGCAAGCTGGCCTTTATGTTAATCTTCGAATTGGTCCCTACGTTTGTGCTGAATGGAACTTTGGGGGATTTCCTGTTT GGCTCAAGTATGTTCCAGGTATTGCTTTCAGAACAGACAATGGGCCGTTCAAGGCGGCTATGCAAAAATTCACTACAAAG ATTGTCAACATGATGAAAGCAGAGAAGTTGTTTCAAACTCAGGGTGGTCCAATAATTATGTCTCAGATAGAGAATGAGTA TGGACCAGTGGAATGGGAAACTGGTGCTCCTGGGAAGGCTTACACCAAATGGGCTGCTCAAATGGCTGTAGGTCTAAATA CTGGGGTCCCTTGGATTATGTGCAAGCAAGAAGATGCCCCTGATCCTCTTATTGACACTTGCAATGCATACTACTGTGAA AAGTTCACCCCCAACAAAAATTACAAACCCAAGATGTGGACTGAGAATTGGACTGGCTGGTACACTGATTATGGTAGTCC AGTCCCTCGTAGACCGGCAGAAGACATGGCATTCTCAGTTGCAAGATTCATACAGAATGGTGGCTCATTTGTTAACTACT ATATGTACCATGGAGGAACGAATTTTGGCCGAACGTCGAGTGGTCTCTTCATTGCCACAAGCTATGAGTATGATGCTCCC ATTGATGAATATGGACTGCTAAATGAACCAAAATGGGGGCACTTGAGAGATTTGCACAAAGCAATAAAACAATGCGAGCC GGCTTTAGTGTCTGTGGATCCAACGTTGACATTACTTGGAAAGGGCCTTGAGGCACATGTTTTCAAGACAAGCTTTGGCG CTTGTGCTGCATTCCTTGCAAATTATGACACCACATCTTCCAGAACAGTTAAATTTGGAAATGGGCAATACAACCTGCCC CCTTGGTCTATCAGTATTCTTCCTGACTGCAAAACTGATGTTTACAACACTGCAAGGGTTGGTGTCAAGAGCTGGGAAAA AAAGATGACTCCGGTGAATAGCGCATTCAATTGGCTGTCCTACAATGAACAACCTGCCTCATCCAGTGGGGATGATTCCC TCACAGGTTATGCACTTTGGGAGCAGGTCAATGTGACCCGGGATTCTTCAGATTATCTGTGGTATATGACAGATGTCAAC ATTGATTCTAATGAAGGTTTTATAAAGAATGGCCAATCTCCTGTTCTTACCGCAATGTCAGCTGGCCATGTTCTGCATGT TTTTGTTAACGGTCAACTTTCAGGAACTGTGTATGGTGGATTGAAGAATCCTAAATTAACATTTAGTGACAGTGTGAAGC TGAGGGTTGGCAACAACAAGATTTCTTTACTTAGTGTATCCATCGGCCTCTCGAATGTTGGCTCGCACTTTGAAACATGG AATGTTGGAGTGTTAGGACCGGTCACACTGAAGGGCCTAAATGAGGGCACAAGAGATTTGTCTCGGCAGAAATGGTCTTA CAAGGTTGGACTGAAAGGTGAAGCCTTGAACCTTCATACCACTAGTGGGAGTTCCTCTGTTCAATGGACACAAGGATCAT TAGTGGCTAAAAAACAACCTTTGACATGGTACAAGGCAACTTTTAACGCGCCGGCCAGCAACGATCCGTTGGCTCTAGAT ATGACTAGCATGGGAAAGGGTGAAGTATGGATAAATGGCCAGAGCATCGGTCGCCATTGGCCTGGATATATAGCGCGCGG TAGTTGTGGTAGTTGTAATTATGCTGGATATTACACTGATACCAAATGCAGGACAAATTGTGGAGAACCCTCACAGAGAT GGTACCATATTCCTCGCTCTTGGTTGAATCCAAGTGGGAACTTGGTGGTCGTGCTTGAAGAATTTGGAGGTGACCCTACT GGAATTTCTTTGGTGAAAAGAACATGA
Protein sequence (LotjaGi6g1v0232200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMESLMRRSKFHVLVFMLFCSWFCYVTASVTYDHKAILVDGKRRILISGSIHYPRSTPQMWPDLIQKAKDGGIDVIQTYV FWNGHEPSPGNYYFEDRFDLVKFIKIVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYVPGIAFRTDNGPFKAAMQKFTTK IVNMMKAEKLFQTQGGPIIMSQIENEYGPVEWETGAPGKAYTKWAAQMAVGLNTGVPWIMCKQEDAPDPLIDTCNAYYCE KFTPNKNYKPKMWTENWTGWYTDYGSPVPRRPAEDMAFSVARFIQNGGSFVNYYMYHGGTNFGRTSSGLFIATSYEYDAP IDEYGLLNEPKWGHLRDLHKAIKQCEPALVSVDPTLTLLGKGLEAHVFKTSFGACAAFLANYDTTSSRTVKFGNGQYNLP PWSISILPDCKTDVYNTARVGVKSWEKKMTPVNSAFNWLSYNEQPASSSGDDSLTGYALWEQVNVTRDSSDYLWYMTDVN IDSNEGFIKNGQSPVLTAMSAGHVLHVFVNGQLSGTVYGGLKNPKLTFSDSVKLRVGNNKISLLSVSIGLSNVGSHFETW NVGVLGPVTLKGLNEGTRDLSRQKWSYKVGLKGEALNLHTTSGSSSVQWTQGSLVAKKQPLTWYKATFNAPASNDPLALD MTSMGKGEVWINGQSIGRHWPGYIARGSCGSCNYAGYYTDTKCRTNCGEPSQRWYHIPRSWLNPSGNLVVVLEEFGGDPT GISLVKRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 28 | 28 | - | – | |
Phobius | 1 | 12 | 12 | - | – | |
SignalP_EUK | 1 | 28 | 28 | - | – | |
TMHMM | 13 | 32 | 20 | - | – | |
Phobius | 13 | 24 | 12 | - | – | |
PANTHER | 13 | 728 | 716 | 0.0 | ||
PANTHER | 13 | 728 | 716 | 0.0 | – | |
Phobius | 25 | 28 | 4 | - | – | |
Gene3D | 26 | 346 | 321 | 4.6E-112 | – | |
SUPERFAMILY | 29 | 346 | 318 | 6.95E-105 | ||
Phobius | 29 | 728 | 700 | - | – | |
Pfam | 37 | 341 | 305 | 2.0E-115 | ||
PRINTS | 40 | 57 | 18 | 3.1E-84 | ||
PRINTS | 61 | 79 | 19 | 3.1E-84 | ||
PRINTS | 116 | 135 | 20 | 3.1E-84 | ||
PRINTS | 173 | 188 | 16 | 3.1E-84 | ||
ProSitePatterns | 175 | 187 | 13 | - | ||
PRINTS | 252 | 267 | 16 | 3.1E-84 | ||
PRINTS | 289 | 304 | 16 | 3.1E-84 | ||
PRINTS | 309 | 325 | 17 | 3.1E-84 | ||
Pfam | 349 | 420 | 72 | 2.3E-24 | ||
SUPERFAMILY | 404 | 574 | 171 | 6.66E-25 | ||
SUPERFAMILY | 584 | 724 | 141 | 2.31E-27 | ||
Gene3D | 588 | 728 | 141 | 1.7E-13 | ||
PRINTS | 619 | 633 | 15 | 3.1E-84 | ||
PRINTS | 646 | 662 | 17 | 3.1E-84 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0232200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…