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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0233100 |
| Transcript ID | LotjaGi6g1v0233100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane-like protein; TAIR: AT4G29850.1 transmembrane protein (DUF872); Swiss-Prot: sp|Q5E975|TM230_BOVIN Transmembrane protein 230; TrEMBL-Plants: tr|A0A1J7GVS5|A0A1J7GVS5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0233100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54236351..54239190) extracted from Lotus japonicus Gifu genome v1.2.
TGCTTTGCTTGCTTTGTGAAAAGTCACAATTTGAGAACACCCAACCAACTCCATAGAGTCTTGAAAAGCAAGCGAAAGCT GAATTCAACCCACCGCCACCTCCACCGCCGTCTCAACCCAACGCAACCCCTTCTCCTCCACCCAAATCTACAACAACAAT GGCATACGTAGATCACGCTTTCTCCATCACAGACGAAGATCTCTTCGAAACCTCCTACACCGTCAACAACAAGCCACCCA TCAAGGAGATCGGCCTCGCCGTTTCCCTTCTCGTCTTCGGCGTTCTCGGCATCGTCATCGGCTCCCTCATGGCCTACAAC CATGTCGGTGGTGACAGAGCTCACGGTATCAAAAACCCTCTTTTAAATTCCATCTGGGTCTTCTCAAAACCCCTCAAAAT TTGATTTTTACATTTCTAATTCTAGAAAAGATATTAAATTTCGGATTAGAGGGTAGAGATTGTAAATGGGTAGCTGGGGA ATTAGAGATTGCTGCTAAAGTTGAAAACTTTTTTACTATTGTTCTATATTTCTATTTTTGATTGATTTTTGGTTTTTTTT TGTTTGTTTGAATGGTTGATAGGGCTGTTCTTTGCAATACTGGGAATGCTCTTGTTCATACCTGGTTTCTACTACACAAG GATTGCATATTATGCCTACAAGGGTTACAAAGGGTTCTCTTTCTCTAACATACCTCCTGTTTAGCATCTTCCTAGCTAGT AGCTATGGTTATAATTTAAGATCACATAGTGTCCACTTGTACAGAACTACAGATCTTCCCTGGTTGTACTCTATGTTCTT TCTTTCTTTATTGTGTTTTGGTTCTTTTTTGTTTTCCTTACATATATTGAGTATTTAGATTGTAATTTGTAATTGACCTC ATGAGCTGAATATAAACTGCTACTTATTAGTTATTAGTATTACTGTTAAGGTTTTGTTATATGGTGTCAATTGTCCTGCT CTGATGAATGGTTATATTTTGATTTTCTGTAATAATAGAGTAGAAGCACAATTTGAGGACTTGTTTACTTTTTTTTTTCT CCTATACTACTTCATATTTGTTGCATTGCATTGCCCTGTACTTGTTGCATTAACCTTCAACTGGTGGTCTGGATGTGAGT TGTAGAAATTTTATATCATCACCTGTCTTTTGTTTTTGGTGTTCTCTCGTGGCTTCTTCTTCCATTTGAACAACGGTAGG AAGTGAGATTATGGGTCCTTTATGTGCCAACCTGTGATGTATATGCTTATTTATCATGTAACTATATATGTTTCATGCAG TTTTGATATCTGATTTTGCTCAAACTGAAACTAGGCTGTGGGTATTGGCAGTTATATTGGGAACTTGGGGGAAGATTTGA TTGAATTATTTTATGTGGGAGGTATATTTGCGAATAACCATCATCAAGTTTTTAGGTGCTCATATGGAGCTCAATTTGCA GGTTGAGTCAAACTTCATTGTTGTTTTCTTATTCATTGTGAAGATTGGTTACCAAGATCCTATAAACCAAATGGAGTGGT GACCTTGTGAGTGTCACCATCTATTCTGAATTCTGCATCTTCGACCATTCCGTTGTGTATATTGTTTTTTGCATACTTGT TTGAGATTTTTTAAACCATTTACAACATCATTCTCCCCATGATATCAGTTATGCATGCGAGGAGAAGATAGCTACCGCAG GAACTGAAAATCAAACATAGATGGTTAAGACTTAAGACTTGTGATGCCCAGTTGAAAATATATACATCATTGAAAATTTA GCACAGAGTAGTAGTCATGGCAGTTTTTAAATGCTAGGTGTATTACTCAGGAAATCACAAGTCTTAAGTTTAAATCCGTG ATTTGAAAATTGAAATACTTGAACTGATACTTGCCTTAGTGGACATCTCATATCTTTGCAGTCATCCTTTGCTGTATTGT GCTGCAAACTTGCAAAGGGACTTAGAAAAGCTTGGTAGTGTAGGGAAGGTTGCCATTGAAGTTAGTCCATAGCAATCAAA TGTGGGATGGAACTATTGACTTCCAAACACCTATATTTTGTCGGGAACTGTTGAGAACAGAACGAGCGAATGATGTTGGA GATGTGATAACATGCAAAGTAGTGGTGATAGGATTTGTTCACTGTTCTGTATGGTGCTGAGTTAAGAGAAGCTCTTCTGA ATAAAGCTAGTCTTGCATGATTCACACTTTTAAATTCCACGATTGGCACTGCCTCTACCAAAACTTCCACTATATATTTG CTTTGCCAATACAAGGCATGTGATGTAGCATTACTCTGTTTTTCTTGTTATTGCGATATTTATTTCATGTGCAGCAACAT AAAGTTTGCTATTGTCAGGTTCTGCTCGTAAAATGGACTCAATTTTTGGGTCTGAGTGGATAGATTGACATCAATATTTT ATTCGTTGGAATAACAGAGATTATGTGAAAAAGAGACTCTAACGCTTAGGCCATTATATGATAGAGCAGAATAACATTAT AGAGAAAGTGTGTACACATTATAATATCAACCTGATGAGCCCTACCCTTTGGACACAATCATGAGACCCTAACTTCTCAG TGACGCATTCTCCTCTCTTTAACAAGGAGAAAAATTCTTTGTTGTTTTGGTCTATTTTTGATTGAACAAGACTTCAACTC CAACAGCAGACAAACATAAAATTTTAATTTTGACAATTTTCACATCACAATTTAGACCCTACCAGAGGGTTTACACGGCA ACCACCACCATTTTTTCCAAATTTGGGGAGGGGAGTTCTTCCCATTAGTGTTCATTTACCCATTTTAGAGGGTCCTCTCT CCATTATAAGAGTTTCTCTAATTTTTTTTTTTTTTTTTTT
CDS sequence (LotjaGi6g1v0233100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATACGTAGATCACGCTTTCTCCATCACAGACGAAGATCTCTTCGAAACCTCCTACACCGTCAACAACAAGCCACC CATCAAGGAGATCGGCCTCGCCGTTTCCCTTCTCGTCTTCGGCGTTCTCGGCATCGTCATCGGCTCCCTCATGGCCTACA ACCATGTCGGTGGTGACAGAGCTCACGGGCTGTTCTTTGCAATACTGGGAATGCTCTTGTTCATACCTGGTTTCTACTAC ACAAGGATTGCATATTATGCCTACAAGGGTTACAAAGGGTTCTCTTTCTCTAACATACCTCCTGTTTAG
Protein sequence (LotjaGi6g1v0233100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYVDHAFSITDEDLFETSYTVNNKPPIKEIGLAVSLLVFGVLGIVIGSLMAYNHVGGDRAHGLFFAILGMLLFIPGFYY TRIAYYAYKGYKGFSFSNIPPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 102 | 102 | 3.0E-53 | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| PANTHER | 1 | 102 | 102 | 3.0E-53 | – | |
| Pfam | 27 | 100 | 74 | 1.2E-17 | ||
| TMHMM | 31 | 53 | 23 | - | – | |
| Phobius | 31 | 52 | 22 | - | – | |
| Phobius | 53 | 63 | 11 | - | – | |
| TMHMM | 63 | 85 | 23 | - | – | |
| Phobius | 64 | 88 | 25 | - | – | |
| Phobius | 89 | 102 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0233100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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