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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0233700 |
| Transcript ID | LotjaGi6g1v0233700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oligosaccharyltransferase complex subunit OSTC-like protein; TAIR: AT4G29870.1 Oligosaccharyltransferase complex/magnesium transporter family protein; Swiss-Prot: sp|Q5M9B7|OSTCB_XENLA Oligosaccharyltransferase complex subunit ostc-B; TrEMBL-Plants: tr|G7IIC1|G7IIC1_MEDTR Oligosaccharyltransferase complex subunit OSTC-like protein; Found in the gene: LotjaGi6g1v0233700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54303490..54306214) extracted from Lotus japonicus Gifu genome v1.2.
TAAGAAGAAGAAAAAATCCATCTTAAACAAGTGAATGCCACTCCCACACTGACATAAATTTCCTCCTCTCTTCCAATCGA CACCGCGAAACCCGACCCGCAAAAAATGCGACCCAAATCGGAGAACCCGGCTCAGCAGAGCTCCAACTCCGGCAACACCG ACTCCTCCTCCGCCGCATCGATAGATCCGATCTTCCATCTACTTCGGATCCTCCCATTCAGCTTCCTCCGCCTGCCTCGC CTCCGCCTGAAGCTGCCGTCACTGACCCTCCCCTCCGCCAACCTCGTCTTCGCTTTCGTCCTCCTCACCTACTTCATGGT CGTCTCCGGCATCGTCTACGACATCATCGTCGAGCCTCCAGGCATCGGCTCCACCCAGGACCCTTACACCGGCGCCGTGA AGCCCGTCGTCTTCATGTCCGGCCGTGTCAACGGTCAGTACATCATCGAAGGCTTGTCCTCTGGATTCATGTTCGTTCTC GGCGGTGTTGGCATCATACTCCTCGATCTCGCTCTGGATCGCAACCGCGCTAGATCCGTCAAGGTTTCATATGCCTCCGC CGGTATCACCTCCGTTCTTCTTGCTTATGTAATGAGTATGCTCTTCATCCGTATCAAGATCCCTGCTTATCTTAGATGAA TTCGCTTTCGTTTCGCATTCGATTCGTAGTTTGATTGTACCTGAGATTTTCGAATTTTCTAGACTCATAATTTGCTCTAT AGGGTTACTGGATTGAAATGCTGATAGTAAATGGATCTGAATTTGGTGATGTTATTTATGTTCTAAGTGATTTAGTTGGA TTGGTAATCCTTGAAATTGTGGTAACATTTTTCGCGCATATATGCATTGTTGAATTATGGGTTGTGTTACTTGTGGCTGA AACATGTTTGCCTAGGGGGGCAATGTTGCTTGTTGCTTCATGAACTGTGGCATCATCGTCCTTTTATGTGTGTATATGTC GATAGATACGATGTTTTCTTTGTTAATATATTAGTTTGATGTGCAAATGTGTGTCTTGGAATGGAGAGACATATTCCTAT GTCACTCCGCTGTCTGAGTAGGATCAGAGGCCATTCTGGCAGAAAAATGCAACATTAAGCAGGCAAATTGGGAGTGCAGA TTTGTCTATGGATTGGCTGTTTGTATTGTGGCTAATTGATTTTGTATCGATGCTTTTCTTGTTTACTGTGAGATGATCTT GCTTTTCCTCTTGCTCTTGCTCGTAAGGTGGTATACCTCTGATTGTGTATGTTCCATTTCCTGCTGTGTAGTCCTGCTCT CTTCAAATTGCAAATACTTCTTAAGATAATGCTGGCTTTTTTTTTTTAGTCATACATTTGCTATCTATTGTGCCCCATAG TCAATACTTAGTACTCAGAGGTACAGAACATGATAAACGTTTTTCAAGTCTGGCACCTTTTGGTTCAATTAAAAAGTTTT CCTCTAGAGTCAGACCATTGGCTCAAATTGTAATCAAGTCCCTCTGGGTATTGCTTGGTCCTGGGATTGGATTCTGACTC AGTCACATTGCCTTTTATTTAGCTTACTTCCCCCTATGTGCACCTGGTCGTTGGCCTCCTTTGTACCAAGAAAAAGTTTC TCTAGTCATTTCTTTGAATTAACATAATGCCAAAATTTACGTACCTGGACATAGTAGTTTATCTGAAGCACATTCCTTTT CATTGTTCATGGACTATGATAATCATTCCTTCCCTATATTTGGTTTAGGGTTGTTGTCATAGACATCAAATATACTTGAT AATTGCACCCCTTTTTGTTGAATATGGATTTTCGTTATCATGTTATCATTTTTTTTACGGTTGAAATAAATTAAGGCTTT GATAGCCTAGATGCAGATTAGGGTTGATTACCACTGTCGCTGCTTTGCCCCTACCTTACCCTAGTATCCCACTCCCCATA CTAAGTCTTAGGCCTAGGGGGGGCAGGGGGAAAAGGATTTAAGGTCACATTTGGATTTAGTGTTTGGGATGAGTGGGTGA TAGAATTGGAAGCCACGGATAGATAGATAAGAAGCTGTTATGACTATGTACAAGGGCAATGTACGAAAGTCTTGAGGATG TAAAGAAAATACAAGTAGCCCATGTAAGAGCAGGGCTTCGTTTTCTCCCACACTTCCCCAACCTGCCTCTCTTCTCCCCT TGCCTTCCCTCGTATCCAAATTCCCAATTAATACTGTATTCCATCATTCTTCTTCTCCCTCTCCCATGGCACTTGGTTGT GGAATCCCCTTAATCACTCAACTGAATTTCGTCTCACCACCTTACTTCCAACATGGTCCAGTATAGGGCTTAACATTAAG GGTATTGAGTTCTTGTGGACTTGTGGCCATTACTTCTCAATTTTGACCCTTGTTCTTCACAATGATAGGTGTGCTAAATA TGTAGCTTTGAACTTTTTTTATTCTCTCTCAGCATAATGTTAGGTTGTGTTTTTGTAACTTTACAAGCTGTTGAATTTTC TATACATATATCCATGTATTATATACTTATTTCTTTAATGCTTGAGATATGTTACTCAAGGATCAAAACTCATGAAATTT GGTGCATTATTTTTTCACTGCTAATGGTTGGTTTGCGCCATGGCAAGATATTTCTGTGTTCGAGTTTTTTTTTTCACTGA TCCTTCTTATGTTGAGGCTGGATGCACTGTGCTCAGCGTTTGTGCTTAATCTAGTCAAAAGATGGAAATGGATACCAGAA CTGAT
CDS sequence (LotjaGi6g1v0233700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGACCCAAATCGGAGAACCCGGCTCAGCAGAGCTCCAACTCCGGCAACACCGACTCCTCCTCCGCCGCATCGATAGA TCCGATCTTCCATCTACTTCGGATCCTCCCATTCAGCTTCCTCCGCCTGCCTCGCCTCCGCCTGAAGCTGCCGTCACTGA CCCTCCCCTCCGCCAACCTCGTCTTCGCTTTCGTCCTCCTCACCTACTTCATGGTCGTCTCCGGCATCGTCTACGACATC ATCGTCGAGCCTCCAGGCATCGGCTCCACCCAGGACCCTTACACCGGCGCCGTGAAGCCCGTCGTCTTCATGTCCGGCCG TGTCAACGGTCAGTACATCATCGAAGGCTTGTCCTCTGGATTCATGTTCGTTCTCGGCGGTGTTGGCATCATACTCCTCG ATCTCGCTCTGGATCGCAACCGCGCTAGATCCGTCAAGGTTTCATATGCCTCCGCCGGTATCACCTCCGTTCTTCTTGCT TATGTAATGAGTATGCTCTTCATCCGTATCAAGATCCCTGCTTATCTTAGATGA
Protein sequence (LotjaGi6g1v0233700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRPKSENPAQQSSNSGNTDSSSAASIDPIFHLLRILPFSFLRLPRLRLKLPSLTLPSANLVFAFVLLTYFMVVSGIVYDI IVEPPGIGSTQDPYTGAVKPVVFMSGRVNGQYIIEGLSSGFMFVLGGVGIILLDLALDRNRARSVKVSYASAGITSVLLA YVMSMLFIRIKIPAYLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 177 | 177 | 5.2E-102 | ||
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 177 | 177 | 5.2E-102 | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| Phobius | 20 | 41 | 22 | - | – | |
| Phobius | 42 | 52 | 11 | - | – | |
| Pfam | 46 | 175 | 130 | 9.3E-11 | ||
| Phobius | 53 | 78 | 26 | - | – | |
| TMHMM | 60 | 82 | 23 | - | – | |
| Phobius | 79 | 111 | 33 | - | – | |
| Phobius | 112 | 137 | 26 | - | – | |
| TMHMM | 113 | 135 | 23 | - | – | |
| Phobius | 138 | 148 | 11 | - | – | |
| TMHMM | 148 | 170 | 23 | - | – | |
| Phobius | 149 | 170 | 22 | - | – | |
| Phobius | 171 | 177 | 7 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein glycosylation | A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. | ||
| Cellular component | Oligosaccharyltransferase complex | A protein complex that is found in the endoplasmic reticulum membrane of eukaryotes and transfers lipid-linked oligosaccharide precursor to asparagine residues on nascent proteins. In yeast, the complex includes at least nine different subunits, whereas in mammalian cells at least three different forms of the complex have been detected. |
Expression pattern of LotjaGi6g1v0233700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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