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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0233900 |
| Transcript ID | LotjaGi6g1v0233900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | O-fucosyltransferase family protein; TAIR: AT1G51630.1 O-fucosyltransferase family protein; Swiss-Prot: sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910; TrEMBL-Plants: tr|I1MH51|I1MH51_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0233900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54347443..54351121) extracted from Lotus japonicus Gifu genome v1.2.
TAAGAGATTCTTGATGCAAAAGCTATGGCTTTTTCCTCTTCCATCGCTTCCTTATGCGTGATTCGATCAGCTTTGTCGCT TTGTCATCATCACCAAGCCTTTTCTGCTGTTTTCTTCCTCGAGTCGGCAACACCGGGGCTTTATATAGAGACCAGTTTGT GATCCCATATCATTAATATGCTCATTTAATTTCTAGAGAGAAGATTGTTGAAAGAAAGATTTCGTGAGTAAAAGAATTAA AAATGTCTCCAATGGACTTGAGGCAAGCCTTAGGTGGCCTTCTCACTCTCTCAATGTTCATCATGCTGGGAAACATGATC AAGAAGGACCATTTTGATTCAATTAATGATGTAAGTCGTCATTCACATCATCACTCATATATGCCTTTCACAATATTTTT TGAGTTGTCATCACTTCCTTGTCCATTTGATCTGTGATGTGATACTTGAAATATTATCTTCCATTTTTGTGTTGATTATC AGAGTAAATGTAAGAGATTTTACCCCATGCAAATGTTGTCATCTAATAACTAATAGAAAAAATGACATATATCAAAGTTT TTTAAGGTTGAAAGTGGAACAAATCGTCTTAAATTTTCATTCACTTAAATAAATTGGATGAAAAGTTAATATTTGGAATA GATTTGTTCAACTTTGAAAGTAGAAGAAGGACTTGGGGTGGGTTTATTTCAGATTAAAAAATAATGACGTTTAACTGTCT AAAAAGAAGAAATTATTTTAAAGAGATTTTAAGAAAATCATAATCTGATTTGTGTTGGTTACACTAAAAAAAATCACTTT TTTTTATCTTCTTCCTCATCTATTATAATAGATTTTTCTAATAAGCTAATCAAAGTAGTTTTTCCAAATAACTTATTTTC AACTTTTTTTAAATAATCATTTTTTAAAAAAGCTGAAATAAACACCTTAACTTTTTAAGAAAGTGATTTTCTTTAATAAA ATCGAAACAAAGGCACCCTTAATTTGAGCACGTGAAACTTTAAAGACTAAAATAACATATTCCTAAAACTATGAGGATTA AAAGTGTAATTTAGTCAAAATATTACCTTTCTCTTTTGTTACGAAGGAATAGGGGTGACAAAATGGACTTAGCTCGCTAG ACCTGCCCGCTTGAACCACTTTTTTTTGGATGGTTTGAGGACCAATCGAATAACCCACTTGAGCCCATGGCAGATTTGGT TGGGTCATCCCACCAAATCAGATATTAAAAAATATTAATTTTATAAAATTGAAATATTGTTAGATGTCCCTCTTATAAAT AAAAAATATCAATTATGCTAGGATAGAAACGTATTTACTTGAAAGCATAAAGGGAAAACAAACTTATTTACAAGTCTAAT TTTATTTATGGACAAAATAAATCAAGTTCAACTTATTTGCAAAGTTTATCATGGTTTGAAGGTTGAAGACTCAAAATTTA GATTGCTAAATTATAATTTAGCATTATTTATTTGAATTGACACCAATTTTGGCTTTTGAAATGTCCATGCATTTTCCTCT TGTAACCAAAAAAAAATTGTCCATGCATTGGTTTTGCAGTGAATACATTATACAGGTTGTGTTGATTAAAAGAAGGTTGG TTTTGTATCATAGTGAAATAATAAAAACAAGAATTTGGAGTATGGTTATAAAATGAGGATTTGGATCATTTGTAGTGAAG GAGTTAAACTCCTGAATTGGAACGAACAAACTAATGAAGTTCTTTTTGCATTGAACCATGTGAAGATTGACATTCATCCA GCTACACCAGATTCCCAGCAAGACTCTGCTGCAGCTATTGACCAAAGCCTAGCCACAGTTTCGCACTTAAGCAAAAGGCC TTGGCAGCAAAATGGTGAAGAACTAAAACCATGCTGGAACACCTCTCCACTGAGTAAGCTTCCATCTTTCATGATCAAGT AGAGGAAATGCTTGCTATAATTCCTGGCTCAATTTGATATTTATCATGTTTATAATTGATCCGCAGAAGAGGCAGAGCAA TCTAATGGTTTCATCATGTTCTCCTTAACAAATGGCCCTGAGTATCATATCTCACAGGTTTTATTTTTGACATCACTTTC ATTTTCAGATGGTTAATGTTTCAAAAATTTCTGATGAAACTTTATTCCTGATGAGATTTCAGTTCTTTTTCTTTTTTGCC TTTTTCTGGGGTCTGATTTTACCATTTATTGGAATGACTTGAACAGATTGCTGATGCTGTGGTTGTGGCCAGATACCTGG GAGCCACTCTTGTGCTTCCTGACATCAAGAGTAGCAAATCAGGATATACCATGTGTGTTCTCTATATAACAGATATCAGT TCCACTTTTGTTAGTTTAATAACCAAGAGAAGCGATTTATGCATAGAACTATGTAAAAGCATTTCATAGAACTCTCAACA AACGACCACTGTTTTTAGAATTCTTCAGCATAGATAATTAGTGTTATATCTAGTTCTTACATATTTGATTTCATTTCAGG AGCCTTGGAGATATCTATGATGTTCAGAATGTTTTGAATAGGCTGGGTGGGTTGGTAAGAGTAACAAGTGCACAGCCTCC TCAAGCATCCAATGGAAACCCACCAATAGTGAAGGTGCCTAACAGGGTTTCAGAAGATTACATTGTGAAGAAAGTTAAGC CCATATACAAATCAAAGGGGATTGTCAAGATTGAATCATACTTTCCCTCAGCTAATGCAACATTAATGGCAGGAAACAAG AAGAACCGGGACCCAGTTGCATGCCAGGCAATGTTTGGAACTCTACAGTTGCAATCAGAGATACAAGAAGTAGCTGAGTT CATGGTCCAAAAGCTCGAAAATTGGAGCCAGGACTCAAATGGCCCCTTCATTGCAGTGGATTTGAGAACTGAGGGGGTGG AAAAGGAGTGCCAGAGAAAAGATGAGACAGGAAAGAAACTTTGTTACCAAGGACATGAGATAGGTGAATTTCTCAACAAG ATTGGGTTTAATCAAGAGAGTGTTGTTTATGTGACACAGACCAAATGGAGTACTGAACTTGATGCGCTCAAAGCTATGTT CCCAAAAACATACACTAAGGTAACTTTTCTATGACCTGAATTCTAATGCCACTTCAAAGTTTCACCTTTTCAATGACATA TTGCTGAATGAAGTCTTATGTTACAACAGGAAAATGTAATGGCAGAAGCTAAGAAGGGAAAGTTTCTCAGCTCAGAAAGC TCTGAATTTGAGAAGGCCATTGATTACTACATATGTTCTAAGAGTGATATCTTTGTGCCTTCTACTCCAGGCCTCTTCTA TGCTAATGTTGTTGGGATGAGAATTGCGTCAGGGAGAAACCAGACACTTGTTCCTGGTGAAATAACATCAGCTTCAGCCT TTGACTATGTATCTCCCTATGTGTCCCAGAAGAGTCATTTTGCTTATGCATGCTTTTGTTAAACTATCCCAACTCTAAGA AAGTATGTATCAGTCAACCAACTAGAGCTTTCTGCTCAATATGGCAATGATGACTATAATATGTATGTATAAACATGTTT CCATCTAAAACGCATAATTCTAAATGAAGGAAATATTGTGTGAATTGTTGGGTTCATTTACCGTACACAAGGACTTTCTT GTGCAAGGTTGCATAAATCTAATTTTACCTGCTAGTGTAGGTTTTCAGCAGGTTACTTTTTTCCTGAGCAATATTTCAA
CDS sequence (LotjaGi6g1v0233900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCAATGGACTTGAGGCAAGCCTTAGGTGGCCTTCTCACTCTCTCAATGTTCATCATGCTGGGAAACATGATCAA GAAGGACCATTTTGATTCAATTAATGATATTGACATTCATCCAGCTACACCAGATTCCCAGCAAGACTCTGCTGCAGCTA TTGACCAAAGCCTAGCCACAGTTTCGCACTTAAGCAAAAGGCCTTGGCAGCAAAATGGTGAAGAACTAAAACCATGCTGG AACACCTCTCCACTGAAAGAGGCAGAGCAATCTAATGGTTTCATCATGTTCTCCTTAACAAATGGCCCTGAGTATCATAT CTCACAGATTGCTGATGCTGTGGTTGTGGCCAGATACCTGGGAGCCACTCTTGTGCTTCCTGACATCAAGAGTAGCAAAT CAGGATATACCATGAGCCTTGGAGATATCTATGATGTTCAGAATGTTTTGAATAGGCTGGGTGGGTTGGTAAGAGTAACA AGTGCACAGCCTCCTCAAGCATCCAATGGAAACCCACCAATAGTGAAGGTGCCTAACAGGGTTTCAGAAGATTACATTGT GAAGAAAGTTAAGCCCATATACAAATCAAAGGGGATTGTCAAGATTGAATCATACTTTCCCTCAGCTAATGCAACATTAA TGGCAGGAAACAAGAAGAACCGGGACCCAGTTGCATGCCAGGCAATGTTTGGAACTCTACAGTTGCAATCAGAGATACAA GAAGTAGCTGAGTTCATGGTCCAAAAGCTCGAAAATTGGAGCCAGGACTCAAATGGCCCCTTCATTGCAGTGGATTTGAG AACTGAGGGGGTGGAAAAGGAGTGCCAGAGAAAAGATGAGACAGGAAAGAAACTTTGTTACCAAGGACATGAGATAGGTG AATTTCTCAACAAGATTGGGTTTAATCAAGAGAGTGTTGTTTATGTGACACAGACCAAATGGAGTACTGAACTTGATGCG CTCAAAGCTATGTTCCCAAAAACATACACTAAGGAAAATGTAATGGCAGAAGCTAAGAAGGGAAAGTTTCTCAGCTCAGA AAGCTCTGAATTTGAGAAGGCCATTGATTACTACATATGTTCTAAGAGTGATATCTTTGTGCCTTCTACTCCAGGCCTCT TCTATGCTAATGTTGTTGGGATGAGAATTGCGTCAGGGAGAAACCAGACACTTGTTCCTGGTGAAATAACATCAGCTTCA GCCTTTGACTATGTATCTCCCTATGTGTCCCAGAAGAGTCATTTTGCTTATGCATGCTTTTGTTAA
Protein sequence (LotjaGi6g1v0233900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPMDLRQALGGLLTLSMFIMLGNMIKKDHFDSINDIDIHPATPDSQQDSAAAIDQSLATVSHLSKRPWQQNGEELKPCW NTSPLKEAEQSNGFIMFSLTNGPEYHISQIADAVVVARYLGATLVLPDIKSSKSGYTMSLGDIYDVQNVLNRLGGLVRVT SAQPPQASNGNPPIVKVPNRVSEDYIVKKVKPIYKSKGIVKIESYFPSANATLMAGNKKNRDPVACQAMFGTLQLQSEIQ EVAEFMVQKLENWSQDSNGPFIAVDLRTEGVEKECQRKDETGKKLCYQGHEIGEFLNKIGFNQESVVYVTQTKWSTELDA LKAMFPKTYTKENVMAEAKKGKFLSSESSEFEKAIDYYICSKSDIFVPSTPGLFYANVVGMRIASGRNQTLVPGEITSAS AFDYVSPYVSQKSHFAYACFC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 421 | 421 | 4.7E-229 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 421 | 421 | 4.7E-229 | – | |
| Phobius | 6 | 26 | 21 | - | – | |
| Phobius | 27 | 421 | 395 | - | – | |
| Pfam | 107 | 382 | 276 | 2.9E-24 | ||
| Gene3D | 227 | 392 | 166 | 2.9E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0233900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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