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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0234400 |
| Transcript ID | LotjaGi6g1v0234400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein ClpB; TAIR: AT4G29920.2 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9SZR3|SMXL4_ARATH Protein SMAX1-LIKE 4; TrEMBL-Plants: tr|V7AYX8|V7AYX8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0234400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54417018..54421912) extracted from Lotus japonicus Gifu genome v1.2.
CATATATCAAGAACATGTTTGGAAGCAGACTAAATAGCACTAATTGGAGCCTATTTAGTGTCTTTTCTAGTAGTCAAGCA CCTTTTAGTCCAAACAAGATATCAATTACTTTTCATCTGTCTATGAATCATTTACCAAAACCAAATAGGGATTAAAAAAA AGAAAAGGAAAAATAAAAAGTAAAAATAAAAAGAACAAGTGACAAGAAGTATAAAGAAGGGGTGAGAGGCCTAGTCTGGT ATTTCCAAAACTTAGCAACTTGCTCTAACCAATTTCTGTCCAAAACTCTCTGTCTTTCTCTCTTCTTCATCTTATCATTC AAACACTTCAGTAACTTCATTCAAGCTTAGTTCCTAGAATCACAGCACTGGCCTTGTAGGTCATACACAGCTTACAAAGA GTGTGAGATAACACTAGTTGAGGGTGGGGTGGTGGTGATTGGAGAGGGAGAAAAATAGAGAACAGAATCAAAAGAAAAGT GTGGTTCTGAGGAGAAGTTTTCAACACAAAGGGGGGTGGTGTGGGGGGGTGGTTTTAGCCAAGTGATGCGCTCAGGAGCT TGTACATTGCAGCAGACCCTCACAGCGGAGGCTGCTTCAGTCTTGAAGCACTCTCTGGGGCTTGCACGCCGGAGGGGCCA TGCACAGGTCACCCCTCTGCATGTTGCAGCCACATTGCTGAGCCTAAGAGCTTCTTCTTTAAGAAGAGCTTGTCTCAAAT CTCAGCCACAACAACAACAAATCCATCATCATCATCATCTTCAATCTTCACATTCACACCATCATCCTCTTCAGTGCAGG GCACTTGAGCTCTGCTTCAATGTGGCCCTCAACAGGCTCCCAACAACACCAGGTCCTCTGCTCCACTCTCAGCCTTCGCT CTCGAACGCGCTCATCGCCGCGCTTAAGAGAGCGCAGGCTCACCAGAGAAGGGGCTGCATTGAGCAGCAGCAACAGCAGC CTCTTCTCACCATCAAGGTGGAGCTGGAGCAGCTCATCATTTCAATTCTTGATGACCCTTCTGTTAGCAGGGTCATGAGA GAAGCAGGGTTCTCAAGCACTACTGTTAAGAGCCACATAGAGGACTCTTCTTCTTCTGCTCCTCCTAATTCTGTTTTTTA CAACAGTTCTGGTGGTGGTGTTTTCTCTTCTCCTTCTTCACCTGCTACTAGTGAGAATCATAACCATTTCTTGGCTTCTT ATAGCCCTGCATTCCTCTGTTCTCCTCTGAAGAAAGCTTCTTCAGTTTACCCCATCTCTGAGCCAGTGCCTTCTTTCAAG GAAGATATCAAGGTTGTTCTTGATGTTCTCTTGAGGAAGAAGAAGAAGAACACAGTGATTGTTGGTGACTCTTTGTCATT AACTGAAGGCCTTGTGGGGGAACTCATGGGGAGGTTGGAAAGAGGAGAGGTTCCTGATGAGTTGAAGTCAGCACATTTCA TCAAGTTTCAGTTTGCACCTGTCTCTTTGAGGTTCATGAAAAGGGACGAAGTGGAAATGAACCTCTCAGCACTGAAGAGG AAGGTGGATTCTGCTATTGCTTCAGGTGGTGGAGGTGGAGGTGCTATTTTCTATGTTGGAGACTTGAAGTGGACAGTGGA GGTTGGAGAAGTTTCTGGTTATAACCCTGTTGATCATTTAGTTGCAGAAATAGCAAAGATGTTTTCTGACATGGGAAATT CAAACTCTAAGGTGTGGCTAGTGGCCACAGCAAGTTATCAAACTTACATGAGGTGCCAAATGAGACAACCTTCTCTTGAG ACTCAATGGGCTCTTCAAGCTGTTCCTGTTCCATCAGGTGGACTTGGCTTGACTCTCAATGGTTCCAGGTAATCAATCTC TTACTTATTTTTTCTCAAAATCAATTTTAGCACTTAGAAGCTACTTCCTATAATTGATTTTGACTTCAGAACCAATTTTA GAAGAATTTTCAAACATGCACTTAATCTACTTGAGTTAATGTAAAAAAAAACTGATTTACTAAATTGCTAGCAATTAAGA AAGAAATCAACATACAAAAGTTACATAGTAAAGGTTCATGATTTGAATGCTCAATTTGTTTTGCATTTTGTTGCTAAGTA CGTACGGTCTCTGGACTGTGCCAGAAGCAGCCACTGTCAAAAAGCATGGTTGGTTGGTAAAATGGTAAGTTAGACGTGAT TCTGAAGCAGTGCCTTTCTGTTTTGCTTTGTGTTGTCAGAACACAAACCTCTTAGACATACGGAATCACATGATATTTTG TCGAATGAGCTTTAGCAAAAGTAAAATAAAGAGGAAAAGGGAGAGTGTTATGTATATTCCAACATATATGCATTATTACC AATGTTTCATTTTATCAAATATGATTTACATAAACCTTTTGGAAGGTATTAAGAGCATGATAATCAAGTTATAATAATCA ACTCAATAGTGTGTGTTTGTTTGAATTTGGATGCTCATAATAGCTTCTGTACTAATTTGCAGTGTCCATGATTCAAAGAT GGCCATCTCCCAGAACCCATCTCATATGCTGGAAACAAAGCTCTTCATTGACAAGGAGGAGCAGGATAATCTCAACTGTT GTGAAGAATGTGCCTCAAATTATGAAAAAGAAGCACAGTTGTTCAAACCAGGCCAGAAGAAACTGTTGCCTTCCTGGCTT CAGTCTCATAGCACTGAAGCCCATCATAAGGTAGTAAAACTTAGCCCTTTTTACACCATTTTGTACAAGAAAATACAGAT TAAAAGCAAACTCCTAAAAAAACTATCTCGTACATACCCGTTTGAAAGAGCTTAATTGAGCTTATTTTATAACAGAAACG CTTATGCAAGTGTTTAACATAGCTATGTAAATAGCTCATATAACCTACATATAAGTTGTTTTGAGCATATTTTCAAAAAA TGCTTACAATAATATGTTTGAGTTTATTTTATAAATTCTTGAGATTAGTTTATGAATAAACACTTATGCGATAAACATTG TTTGCCATAAGCAGTTGTTTAACTTAAGTCTCCCATAATCCAACAACTAATAATTGTGACACAACTTGTATATGCATTTG TTTCCATTAATTGAGATATAGTGGCTTACAAACACTTCAATGTTTTTCAGGATGAATTATCCCAGTTGAAAAAGAAATGG AACAGACTATGCCAGAGTCTCCACCAGAACAAACAGCCTCAAAACCATTGGAGCAACAGTATACTTGGCAATCAGAGTTC AAATGGCAAGATCTACCCTTATAATTCATCATACCCTTGGTGGCCAAACCAAGGTAGTGCCATCATCCCGGATGCCAGTT CTATATCTTTTGCTGATTCTGCAGCAGCCAAACCTGCTTATAGCTCCAACCTTGTACCTCGGTTCCGGCGTCAGCAATCA TGCACCATTGAGTTCAATTTCAGCGATGTAACTCAGAACAATCAATCCACAACCACCTTGGATTCTCTTAAGGGCATGGA GGAAGGTAATAATGAAGTAAAGATTAGTCTTGCTCTAGGAAATTCTTCAACATTCGGTGGTTCAGGGCAAACGGTGGGAA AAAATATAACTACTCAGCGACAAGCTCATATTTGTAAACTGTTGCAGGACAATGTGCCATGGCAATCTGAAACTACTGTT GCTTCAATAGCAGAGGCCTTGGTTGATTCCAAATCAGCAAAGCAAGGTGCAACTTGGTTGTTTTTGCAGGGAAATGACTC TGTTGGGAAAACAAGGTTAGCAAGAGCCATTGCTGAATCAGTTTTTGGCTCAGCTGACAAGCTCCTTCACTTTGACATGT GGAAAATGGAGAAGAATTCAGCAACCCCATTTTCTGAAATGCTGGCTGCCGCACTGAAAACAAATGAAAAGCTTGTCCTT TTGATTGAAAATGCTGATTTTGCTGATGCTCACTTCAAGAAATCCCTTGCAGAAGGATTTGAAACATCTAAGTTTGGAAG TTTAAGCCAAGCAATATTCATATTGAGTAATGGTGGCACTAGAATCAATGAACAGAACAATGACTCAGTGGTCAAGTTGA TGTTGCAGATTAGTGAAACCAAGCCTACATTGGAGTTATCTCACAAGAGAAGGGCTGAACTGGATTTTTTTACCAAGAGC AAGAGCCCAAGGATTGAAGAGAAGGAAGAAATTACTGTGTTGGTTTCTGAGCAAAGCAACAGCAGAAAGAAAGACTTTTC AAGACAGTCAAGCTTTAACACTGATCTTGACCTGAACATGAAAGCTGATGAAGAGGATGATGGGGAAGACATTTCAAGTG ATTTGACTAGAGAAACCATAGCCGATCCCTTGAACTCAAATGGGTCTCTGGATTCAGTTGAGAACCATTTTGAGTTCAAT CAAAGTGCAGCTAAGGAAAGAAAGATGGGAGAGGTGTTTCTGTGGAAGATCAAGGAGTGTTTTGAGGAGGTTTTTGGGAA AGAAAAGCTGGGGAATTTTACTGTAGAAGAGAGGGTGATAGAGGAAATTGGTGTTGGGTGTGATTCTTTTACTAACAGCA TGTTTGAGAAATGGCTGAAAGACATTTTTCAAAGCAGTTTACAGACAGTTAAGTTGGGTGGGGGGAAGGGGGGTATAGTT TTTACACTTTGTGGGGGTGGTAAAGAGGATACAGCAAAATTGGATAGTGGGTTCATGAGTTCATGTTTGCCCAACAACAT CCAAGTTAACTACTTCATGGATTAAGTAAGAACTGACTTTGGTTTAGAGGGGTGGGGGTTTCTTGTAAAATGGTTTCCTC AAGATGTAAAATGGAAGTGATAGCCTTGGTGTAACTGCTAATTTTCATTATATAATGTGTTTGTTTTTCTTCTGTTTTCA ACTCTTTTGTCAAAACCATTTCTCATCACTCCTACTTGCAATTCTTATGTTTCTATTTTTTTCAAATCACTAGCTGCAAC CTAACTAAACCTAAG
CDS sequence (LotjaGi6g1v0234400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCTCAGGAGCTTGTACATTGCAGCAGACCCTCACAGCGGAGGCTGCTTCAGTCTTGAAGCACTCTCTGGGGCTTGC ACGCCGGAGGGGCCATGCACAGGTCACCCCTCTGCATGTTGCAGCCACATTGCTGAGCCTAAGAGCTTCTTCTTTAAGAA GAGCTTGTCTCAAATCTCAGCCACAACAACAACAAATCCATCATCATCATCATCTTCAATCTTCACATTCACACCATCAT CCTCTTCAGTGCAGGGCACTTGAGCTCTGCTTCAATGTGGCCCTCAACAGGCTCCCAACAACACCAGGTCCTCTGCTCCA CTCTCAGCCTTCGCTCTCGAACGCGCTCATCGCCGCGCTTAAGAGAGCGCAGGCTCACCAGAGAAGGGGCTGCATTGAGC AGCAGCAACAGCAGCCTCTTCTCACCATCAAGGTGGAGCTGGAGCAGCTCATCATTTCAATTCTTGATGACCCTTCTGTT AGCAGGGTCATGAGAGAAGCAGGGTTCTCAAGCACTACTGTTAAGAGCCACATAGAGGACTCTTCTTCTTCTGCTCCTCC TAATTCTGTTTTTTACAACAGTTCTGGTGGTGGTGTTTTCTCTTCTCCTTCTTCACCTGCTACTAGTGAGAATCATAACC ATTTCTTGGCTTCTTATAGCCCTGCATTCCTCTGTTCTCCTCTGAAGAAAGCTTCTTCAGTTTACCCCATCTCTGAGCCA GTGCCTTCTTTCAAGGAAGATATCAAGGTTGTTCTTGATGTTCTCTTGAGGAAGAAGAAGAAGAACACAGTGATTGTTGG TGACTCTTTGTCATTAACTGAAGGCCTTGTGGGGGAACTCATGGGGAGGTTGGAAAGAGGAGAGGTTCCTGATGAGTTGA AGTCAGCACATTTCATCAAGTTTCAGTTTGCACCTGTCTCTTTGAGGTTCATGAAAAGGGACGAAGTGGAAATGAACCTC TCAGCACTGAAGAGGAAGGTGGATTCTGCTATTGCTTCAGGTGGTGGAGGTGGAGGTGCTATTTTCTATGTTGGAGACTT GAAGTGGACAGTGGAGGTTGGAGAAGTTTCTGGTTATAACCCTGTTGATCATTTAGTTGCAGAAATAGCAAAGATGTTTT CTGACATGGGAAATTCAAACTCTAAGGTGTGGCTAGTGGCCACAGCAAGTTATCAAACTTACATGAGGTGCCAAATGAGA CAACCTTCTCTTGAGACTCAATGGGCTCTTCAAGCTGTTCCTGTTCCATCAGGTGGACTTGGCTTGACTCTCAATGGTTC CAGTGTCCATGATTCAAAGATGGCCATCTCCCAGAACCCATCTCATATGCTGGAAACAAAGCTCTTCATTGACAAGGAGG AGCAGGATAATCTCAACTGTTGTGAAGAATGTGCCTCAAATTATGAAAAAGAAGCACAGTTGTTCAAACCAGGCCAGAAG AAACTGTTGCCTTCCTGGCTTCAGTCTCATAGCACTGAAGCCCATCATAAGGATGAATTATCCCAGTTGAAAAAGAAATG GAACAGACTATGCCAGAGTCTCCACCAGAACAAACAGCCTCAAAACCATTGGAGCAACAGTATACTTGGCAATCAGAGTT CAAATGGCAAGATCTACCCTTATAATTCATCATACCCTTGGTGGCCAAACCAAGGTAGTGCCATCATCCCGGATGCCAGT TCTATATCTTTTGCTGATTCTGCAGCAGCCAAACCTGCTTATAGCTCCAACCTTGTACCTCGGTTCCGGCGTCAGCAATC ATGCACCATTGAGTTCAATTTCAGCGATGTAACTCAGAACAATCAATCCACAACCACCTTGGATTCTCTTAAGGGCATGG AGGAAGGTAATAATGAAGTAAAGATTAGTCTTGCTCTAGGAAATTCTTCAACATTCGGTGGTTCAGGGCAAACGGTGGGA AAAAATATAACTACTCAGCGACAAGCTCATATTTGTAAACTGTTGCAGGACAATGTGCCATGGCAATCTGAAACTACTGT TGCTTCAATAGCAGAGGCCTTGGTTGATTCCAAATCAGCAAAGCAAGGTGCAACTTGGTTGTTTTTGCAGGGAAATGACT CTGTTGGGAAAACAAGGTTAGCAAGAGCCATTGCTGAATCAGTTTTTGGCTCAGCTGACAAGCTCCTTCACTTTGACATG TGGAAAATGGAGAAGAATTCAGCAACCCCATTTTCTGAAATGCTGGCTGCCGCACTGAAAACAAATGAAAAGCTTGTCCT TTTGATTGAAAATGCTGATTTTGCTGATGCTCACTTCAAGAAATCCCTTGCAGAAGGATTTGAAACATCTAAGTTTGGAA GTTTAAGCCAAGCAATATTCATATTGAGTAATGGTGGCACTAGAATCAATGAACAGAACAATGACTCAGTGGTCAAGTTG ATGTTGCAGATTAGTGAAACCAAGCCTACATTGGAGTTATCTCACAAGAGAAGGGCTGAACTGGATTTTTTTACCAAGAG CAAGAGCCCAAGGATTGAAGAGAAGGAAGAAATTACTGTGTTGGTTTCTGAGCAAAGCAACAGCAGAAAGAAAGACTTTT CAAGACAGTCAAGCTTTAACACTGATCTTGACCTGAACATGAAAGCTGATGAAGAGGATGATGGGGAAGACATTTCAAGT GATTTGACTAGAGAAACCATAGCCGATCCCTTGAACTCAAATGGGTCTCTGGATTCAGTTGAGAACCATTTTGAGTTCAA TCAAAGTGCAGCTAAGGAAAGAAAGATGGGAGAGGTGTTTCTGTGGAAGATCAAGGAGTGTTTTGAGGAGGTTTTTGGGA AAGAAAAGCTGGGGAATTTTACTGTAGAAGAGAGGGTGATAGAGGAAATTGGTGTTGGGTGTGATTCTTTTACTAACAGC ATGTTTGAGAAATGGCTGAAAGACATTTTTCAAAGCAGTTTACAGACAGTTAAGTTGGGTGGGGGGAAGGGGGGTATAGT TTTTACACTTTGTGGGGGTGGTAAAGAGGATACAGCAAAATTGGATAGTGGGTTCATGAGTTCATGTTTGCCCAACAACA TCCAAGTTAACTACTTCATGGATTAA
Protein sequence (LotjaGi6g1v0234400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRSGACTLQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSLRRACLKSQPQQQQIHHHHHLQSSHSHHH PLQCRALELCFNVALNRLPTTPGPLLHSQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEQLIISILDDPSV SRVMREAGFSSTTVKSHIEDSSSSAPPNSVFYNSSGGGVFSSPSSPATSENHNHFLASYSPAFLCSPLKKASSVYPISEP VPSFKEDIKVVLDVLLRKKKKNTVIVGDSLSLTEGLVGELMGRLERGEVPDELKSAHFIKFQFAPVSLRFMKRDEVEMNL SALKRKVDSAIASGGGGGGAIFYVGDLKWTVEVGEVSGYNPVDHLVAEIAKMFSDMGNSNSKVWLVATASYQTYMRCQMR QPSLETQWALQAVPVPSGGLGLTLNGSSVHDSKMAISQNPSHMLETKLFIDKEEQDNLNCCEECASNYEKEAQLFKPGQK KLLPSWLQSHSTEAHHKDELSQLKKKWNRLCQSLHQNKQPQNHWSNSILGNQSSNGKIYPYNSSYPWWPNQGSAIIPDAS SISFADSAAAKPAYSSNLVPRFRRQQSCTIEFNFSDVTQNNQSTTTLDSLKGMEEGNNEVKISLALGNSSTFGGSGQTVG KNITTQRQAHICKLLQDNVPWQSETTVASIAEALVDSKSAKQGATWLFLQGNDSVGKTRLARAIAESVFGSADKLLHFDM WKMEKNSATPFSEMLAAALKTNEKLVLLIENADFADAHFKKSLAEGFETSKFGSLSQAIFILSNGGTRINEQNNDSVVKL MLQISETKPTLELSHKRRAELDFFTKSKSPRIEEKEEITVLVSEQSNSRKKDFSRQSSFNTDLDLNMKADEEDDGEDISS DLTRETIADPLNSNGSLDSVENHFEFNQSAAKERKMGEVFLWKIKECFEEVFGKEKLGNFTVEERVIEEIGVGCDSFTNS MFEKWLKDIFQSSLQTVKLGGGKGGIVFTLCGGGKEDTAKLDSGFMSSCLPNNIQVNYFMD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | - | – | |
| PANTHER | 1 | 1018 | 1018 | 0.0 | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| PANTHER | 1 | 1018 | 1018 | 0.0 | – | |
| Phobius | 4 | 12 | 9 | - | – | |
| ProSiteProfiles | 8 | 184 | 177 | 29.457 | – | |
| Gene3D | 9 | 184 | 176 | 1.7E-46 | ||
| SUPERFAMILY | 12 | 179 | 168 | 3.27E-6 | ||
| Phobius | 13 | 16 | 4 | - | – | |
| Phobius | 17 | 1021 | 1005 | - | – | |
| Pfam | 26 | 46 | 21 | 0.62 | ||
| Pfam | 145 | 181 | 37 | 1.9 | ||
| Coils | 313 | 333 | 21 | - | – | |
| Gene3D | 636 | 839 | 204 | 2.6E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein metabolic process | The chemical reactions and pathways involving a protein. Includes protein modification. |
Expression pattern of LotjaGi6g1v0234400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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