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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0236700 |
| Transcript ID | LotjaGi6g1v0236700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G61680.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q84WM7|PPME1_ARATH Pectinesterase PPME1; TrEMBL-Plants: tr|A0A072VAU8|A0A072VAU8_MEDTR Pectinesterase; Found in the gene: LotjaGi6g1v0236700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54661392..54664751) extracted from Lotus japonicus Gifu genome v1.2.
AATCCTTTCAGTTTTGCCTTCCATGTTCGTGTGATTAAAAAGCCTTTGTTTAATTTTATCTTCCTAACATAAAATGGGTG AATGACATTAACCACTCCAAAAATATAGTGTTACAAATTTAAGCATCTCTCTTGTTCTAAGTGTCCTATCATTTGCAAAA TCACTCAATCTTTGTTCATCATTCACCCCAGAAACAAAACTTCAATAGCAAAATCAAGAACTAAAAACATGGCTTCAAAA ACCAAAATTTGCATTACTCAAGTGGCTTTCATAGCTTTTCTCATAGCTGATGTTGTTCTATGCGATGACAATGTGCCAGT TCCTGCAGATAGGGCTCAAGTTGACAAATGGTTTAGTGAAAATGTTGGGCCCTTAGCTCAGAGGAAGGCTACCCTGGACC CTGCACTAGTGGCGGCGGAGGATTACCCTCCTAAGGTTGTGAAGGTTAAGCCAGATGGAAGCGGCGATTTCAAGACCATC ACGGAGGCCATTAACAGCATTCCTATAGCGAACGCCAAGCGTATGATTGTGTACATTGCAGGCGGAAATTATAATGAGAA AGTGAAAATTGATAGAGGAAAGCCATTTATTACCTTTTATGGAGAACCAGGGAACATGCCAAACTTGACATATGGGGGCA CTGCAAAACAATATGGCACTCTTGACAGTGCTACATTGATCGTTGAATCGGATTACTTTGTGGCCACTAACATCATCTTC TCGGTACGTATTCAATAAAAAATCAAAACAAAAGCCAAATAACTGTGTGCATGTTTAGAGATTCTTCTGCAATTAATTCT GAAGTCAGAATCAATTCTTTCGAGAAGCTTAGGTGTTTCAGAATTGAATTTAAGAAAAACAAATTAAGCAGTTTCAAACA CGCTAGGAGTTTGAGTACTATACATAATTATATATTTTATATATGCCTTTTATTGACTTCTGATTTGCTTTCTTGTTTAG AACTCTGCACCAAGACCTGATGGAAGGGAGGACGAACAAGCAGTAGCATTGAGAATTACTGGTGACAAAGCAGCATTTTA TAACTGCAAGTTTTTTGGATTCCAGGACACGTTGTGTGATGATAGGAATAAGCATTTCTTCAAAGATTGCTTTTTTCAAG GCACCGTGGACTTTATTTTTGGAAGTGCGAAATCTCTATATTTGGTAATTAATAATAACTTTTTAGTGAACTGTATAATG TTTTTAGGCCTCATTTGGGAAAATAGCTTAATTAAGCGCTTATGAGCACAATCGCTTATTACATAAGTGTTTATTCATAA GTTATTTTTAAAATTTTATTGAAATAAATTGAAAATAAGGTATACATAAGCATAAATTGTTTCTCATAAGCTATTCAAGC TATCCTGAATAACTTATGAAAATAAGCTCAAAACAGCTTATAATAGGGCATAAGCTATTAGCATAAGCTCTCTCAAACAC TGTCGTAAACACTTATGCTATTAGATAAGCTCAAATAAGCTCTTCTAAACAAAGCCTAATCTTTTGAGGGGGTCGAAAGT GTTACGATTAGGGGTGTTCATCGGATCGGATCGATCCGATGAAACTGACGAACCGAACCTAACAAAGTAATTGGATTGAT TTTTTTGTTATTCGGTTCATAACTGATCGAAACCGATAAAAATCAGTGAAGAATGGTTCGGTTCACGGTTTGAAAAATAA AAAACTAGTAAACCGATGAACCGAACCAAAGATATATATTTATTTATAAAATATTTTAATGTATATATATATATATGTGT GTGTGTATTTAAGAAATGTTTTGAAGAAATATTATTTATGTTAGATTTTTTATGTTTGTTAAACTTATTATGTTTTTGTT TTCTATTATTAATTTGTGATGGTACCTATACTAAACATTACATTAAGCATTTCTGCAATTGGATTGATTTTTTTGTTATT CGGTTCATAACTGATCGAAACCGATAAAAATCAGTGAAGAATGGTTCGGTTCACGGTTTGAAAAATAAAAAACTAGTAAA CCGATGAACCGAACCAAAGATATATATTTATTTATAAAATATTTTAATGTATATATATATATATGTGTGTGTGTATTTAA GAAATGTTTTGAAGAAATATTATTTATGTTAGATTTTTTATGTTTGTTAAACTTATTATGTTTTTGTTTTCTATTATTAA TTTGTGATGGTACCTATACTAAACATTACATTAAGCATTTCTGCATTATTAAGTTCTTAATTAAGTTGTTGATTATGAAT TAAGCTACGATTGATATATGGATTTCCCATTTTTATGCATTGTTAAGTTGTGAATCATATGCGATTGCTATATATCTAAA GTTGTGCCATTGATATTGAAAAAAAAAAAAAGAGGTTGCGAAACTGATGAACCGAGCCGATCCAAACTGTTCATCATCGA TTTGGTTCGGTTCGATTTTGAAAACTTTTTTGCTATCAGTCGATTAAAACCGAACCAATGAATTTTGATTGGATCGGTTT TTGGTTTCACCTAAAACCGATCCAAACCGAACCACGAACACCCCTAGTTACGATGAATTTTGCAAACTCTAAGCACTAAA CCTTAAATCTTAAACAATTACGATCCATGCAGAGGTCACAGCTGAACGTGCTCGGCGATGCCCAAATGACAGCAATAGCA GCACAAGGAAGGAAAAACACGGTAGATGACGAAGGCTTCACATTTGTCCATTGCGACATCACTGGAACCGGGAATGGAAC CTACTTGGCAAGAGCATGGATGTCTCATTCTAGAGTGATTTATGCTTACTCCCAAATGACCGATGTTGTGAATGATGCCG GGTGGACCGACACCATGGCGGTGGACTATGGCGAGTATGTTTTGTTCTTTGGATTGAAATCTTTTGTCCTCAAACTTTGA CTTAAAATCTTGACATAAAAATCATATAATAGCATAATGTGACTAATATATGTCATTGTCTACAGGACTGTGTATTTTGG AGAGTACAATAACGCAGGACCTGGTGCAGATCGTACTGGGCGACCTGAGTATGTGAAGCAACTAAGTGATGCTGAGGTCA AACCTTTCATTACGCTTGCTTCGATTGAAGGTTCCAAATGGCTACTTCCTCCATCAAAAGTCTAATTGATCGATCACCAC ATTCTTCTATATATATGGCAATAATATTGGTCATGCACCCCACATTTTGTTATACTGGTGGTGAATTAGGAAAAGGCTCA GCTCATAAAGTTGTTCGTGCTTGTAATTTATTTTTTGTGTTTTTTTAAAGTAAAATATGTATAATATATATGAAAAGTTG AGAAAAAACTCATCTCAATTTATTTTAGTGTTTAACATATCAACATTGTAATAATAAGAGGTAGTTGTTTTTGATAGACA
CDS sequence (LotjaGi6g1v0236700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAAAAACCAAAATTTGCATTACTCAAGTGGCTTTCATAGCTTTTCTCATAGCTGATGTTGTTCTATGCGATGA CAATGTGCCAGTTCCTGCAGATAGGGCTCAAGTTGACAAATGGTTTAGTGAAAATGTTGGGCCCTTAGCTCAGAGGAAGG CTACCCTGGACCCTGCACTAGTGGCGGCGGAGGATTACCCTCCTAAGGTTGTGAAGGTTAAGCCAGATGGAAGCGGCGAT TTCAAGACCATCACGGAGGCCATTAACAGCATTCCTATAGCGAACGCCAAGCGTATGATTGTGTACATTGCAGGCGGAAA TTATAATGAGAAAGTGAAAATTGATAGAGGAAAGCCATTTATTACCTTTTATGGAGAACCAGGGAACATGCCAAACTTGA CATATGGGGGCACTGCAAAACAATATGGCACTCTTGACAGTGCTACATTGATCGTTGAATCGGATTACTTTGTGGCCACT AACATCATCTTCTCGAACTCTGCACCAAGACCTGATGGAAGGGAGGACGAACAAGCAGTAGCATTGAGAATTACTGGTGA CAAAGCAGCATTTTATAACTGCAAGTTTTTTGGATTCCAGGACACGTTGTGTGATGATAGGAATAAGCATTTCTTCAAAG ATTGCTTTTTTCAAGGCACCGTGGACTTTATTTTTGGAAGTGCGAAATCTCTATATTTGAGGTCACAGCTGAACGTGCTC GGCGATGCCCAAATGACAGCAATAGCAGCACAAGGAAGGAAAAACACGGTAGATGACGAAGGCTTCACATTTGTCCATTG CGACATCACTGGAACCGGGAATGGAACCTACTTGGCAAGAGCATGGATGTCTCATTCTAGAGTGATTTATGCTTACTCCC AAATGACCGATGTTGTGAATGATGCCGGGTGGACCGACACCATGGCGGTGGACTATGGCGAGACTGTGTATTTTGGAGAG TACAATAACGCAGGACCTGGTGCAGATCGTACTGGGCGACCTGAGTATGTGAAGCAACTAAGTGATGCTGAGGTCAAACC TTTCATTACGCTTGCTTCGATTGAAGGTTCCAAATGGCTACTTCCTCCATCAAAAGTCTAA
Protein sequence (LotjaGi6g1v0236700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKTKICITQVAFIAFLIADVVLCDDNVPVPADRAQVDKWFSENVGPLAQRKATLDPALVAAEDYPPKVVKVKPDGSGD FKTITEAINSIPIANAKRMIVYIAGGNYNEKVKIDRGKPFITFYGEPGNMPNLTYGGTAKQYGTLDSATLIVESDYFVAT NIIFSNSAPRPDGREDEQAVALRITGDKAAFYNCKFFGFQDTLCDDRNKHFFKDCFFQGTVDFIFGSAKSLYLRSQLNVL GDAQMTAIAAQGRKNTVDDEGFTFVHCDITGTGNGTYLARAWMSHSRVIYAYSQMTDVVNDAGWTDTMAVDYGETVYFGE YNNAGPGADRTGRPEYVKQLSDAEVKPFITLASIEGSKWLLPPSKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| PANTHER | 10 | 364 | 355 | 4.6E-136 | – | |
| PANTHER | 10 | 364 | 355 | 4.6E-136 | – | |
| Phobius | 19 | 25 | 7 | - | – | |
| Phobius | 26 | 366 | 341 | - | – | |
| Gene3D | 66 | 364 | 299 | 8.0E-89 | ||
| SUPERFAMILY | 67 | 360 | 294 | 2.86E-75 | ||
| Pfam | 71 | 349 | 279 | 1.6E-64 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi6g1v0236700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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