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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0238100 |
| Transcript ID | LotjaGi6g1v0238100.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; TAIR: AT2G19160.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; Swiss-Prot: sp|A6WWG6|ISPH_OCHA4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TrEMBL-Plants: tr|I3T5Y5|I3T5Y5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0238100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54789157..54796904) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATTAGTAAAGTAGAAAATAACTGACCAATCGTTGGCTGCAGTGCATGAGGGAGACTGTTCCTTCGTCTTGGTCTGC CACTGCAAGTTGAGTAGAAGAGTTCCTTTTTCCTCACTTTCTCAGAGATAAAGCAAAACACACACTCAAAACGCTTCGTT TTCTGATCTTTCACCACCCAATTCCATTCTCTTGTTCTCACAATTCCTTCGATTCACAGGTAAATGCTCTTGTTGTGTCG AGTTTAGCTGCAATTACTCCATGGAAATTGAAAAAAAAGTATTGGGTATTCACTCTGTTCTAGCTTTTTGAGCTGGGCTA CTCCAAAAACGTTGAATTGATTGATTGATTGTGTTTTAGTATTCATTTGTAAGATTGAATGATGAATACTGTTCATGTTT TGTGTTTTTTTTTTTTAATCTCCAAAGATTATATTTTTCTGGTTCCTAGATGATGTTGCTTTTGTGATTTTAGATTTGTA ATCATACTATTGCATGTGGGTTATGTGTAAAAATTTGGTCTTTTTTAAATGTTAATGAAGTAGAGAATTCTGGGTTTTGA CCTCACAGATCAGTGGTTCCTCCTCACTCCTTAATAGCTAGTATGTTAGGATTGTATAATGGTCATTTAGATATATTGAT TTCTACTATCCCTTGAAGTTTGAAATTTACAACCCGAATTTTTTCTTTGTACTGCATTATGTGTGGTTGAACATGGAAAA ATTGGTTTCTGATGGCTTGTGGAGTTATGTCTGTCGATTTTATAGTCTCTTCCCTTTTTGTATAGCGAGCACCATGTATG TCTGTCTGGGTCTAGATGTCTGTGTTCAAAACTGAGTTGACTTAAGTGGGTGGCTTGTTAGCTAATGTATCTGCATTTTG TGTTTTGATTCAGATTTTTTAGCATCAATCCGTTGAAGATATCTTGTAAGGCGTTTATCTTGAGTTCTTGTGTGTGCATG GAATGGTGATCCATGAGGAAAGGAGATTTGTGGACAGCAAAAACCGTGATTTGTTTACATAGATGAAAACAGCAAAGTTT TGGTGCCTAAGCATGGGTGATATGCAGATCTTGCCTGGATCTCGCTACCGTCCTTCCGTGAAGAAGCCAATTTGGATTAT TGTCCTGGTTTTGTTTGTGTGCGTGTTTCTCATATGTGCTTATATCTACCCCCTAAGAAGCAGTACAGCTTGTTATGTTT TTCCTTCTAGAGGGTGCAAGGTTATTGCTGATCAGCTTCCACCTCTTCCTGCAAGGGAGTACACCGATGATGAGATTGCA TCACATGCTGTTATTAGGGATATTTTAAACACACCACCAGTTTCACAAAATCCAAAAATTGCCTTCATGTTTTTGACGCC TGGTTCTCTACCATTTGAAAAATTGTGGGATAAATTTTTCCAAGTAAGGATTTGTTACCTGTCTATTTGATCTGTTTTTG TATCATATTATTATTTAATTATTTTGATGCACTGAATTTGAATGGTAAACAGGGGTAGTGGTCTAATGCACCTCTAGCTG AGTAGCCAAATTTGTTAATGATCTTTCTTGCTATAAGGGAATGAGGGGCAAAGGAATGTGGTTTAACTTGATTGAAGGTT AATTTTTTAAATTTATCAATCAACAACGTTGCATTTGAAAGAAATGGATAATGTGGTATTGCAACTTATTGCAAAATTAC AGTCTCCTCCCTGTTAGATATGAGGTGTTCTTGGAAACTGTTGTGACAAAGATGTCACAGCCTTGGGTGCTTAGTTGAAA GTACTGATTCGGTTTAGTATTTGATCCATAAAATGTTAATTTGCAAAATAGACATCATATCTTTTATTCATAAATTGTTG ATAATGTACTAGAATCAGACTTGTACTTATGATTTCGTTGGTTTATTGTCTTTGCTTCTGGATCACATTCATTATGTACT GCGTACTTACCTGGAATAATGTTCTTCTCCTTTTTGGCAGGGTCATGAAGGGAAGTTCTCTGTTTATGTGCACGCATCTA AGACTAAACCAGTTCATGTGAGCCGTTATTTTGTTAATCGGGATATACGCAGCAGCCAGGTGGACAATCTGTCTTTTAAC TGTTCAGTTAACTACTATCTGTCATCTGTCGACTCTATCGTGTCATATTATATTCTTCAATGAAAATCATTATTTAAAGG TATATGACTTCTTGGTTTTCTTTAATATCCTTTTTATTTGTACCCTTAAATATATGTGACACCTCTTCACCTTTTGCTCA AGTTATGATCAAATTGAACCTCTTGCTTTTGAGGGCCCGAATATAGATATGAAACCAAGACCCCTCTGGACTTATTGTCA ACTTAGACATTAACTGATGGTGTAAGAATTTAATAAACATGTCCGGGGATATAATGCATAGTAGGTTCTTCATCGAAATC ATCTAGGATTCCAATATTTTACATCGGTAACTTAAAGCTGCAATTTCACACTTCCCTTCTCATTATCCAGAAATGAGATT TATATTATAGTGTATTTTGTTTACTTATTCACATAACCCTAGGATTCAGCATAGCCTTAGAAGCCAACAATTTCAGTCTA GTTTGACCTGTGTGAACTTATTTATTATTTATATATCATCATCGTCATCATTGTCGTCATTATTAGTATCCTTGTTATTA TGAAAATGCTTCAGCAATACATCCTGTTTTCAATTGTTCTATCCAAGAACATAGAGATGAGGTATGGTACCTAGAGTGAA AGGATCGTGATGTGAGAATCTAGAGAGAGTTTAGAGCATAACCTCTTAGAGAGAGAAAGTAACTGAATTTCCAGCTTGTT ATTTCTCAAATGAGCTAAGAGTCCCTTACAATTGATACCCGCCCCCTATTTATAGGCTTGGGGCTGGGCTTAGCGTTCCT GACCACCCTTAGTGGGCCAGTTGGGCCTCCTGGGAGAGGGCCCAACTCTCTGGCTCGCGTGTCGCCCCCAAACAAACGTC CCTGGGCGAGGGCCCTTGGGGTCTCGCCCAGTCCACCAATCATTAATTGGTATATTTTTCAAAGAGTTGCTTAAGGCATT AAGGTCAACTATTGGTCTTGAAAGTAGCAATAGCGGTAGGCCAGTAGCAAGTGTAACTATCAGTTGTTAACTAGTTAGCA GCTCTGACGATAATTAGTTACATGTTGCAGGTGGTATGGGGTAAAATTTCCATGATTGATGCAGAGAGACGACTATTGGC AAATGCCCTACAAGATCCTGATAACCAGCAATTTGTTTTACTTTCTGATAGGTAATTTCCATAGTAATTAGCATTACTTA TTGTTTATTTATTTTGGTTTCTGATGTTTTTTTGCGTGGGTTTTGCAGCTGTGTGCCACTCTTTAATTTTGACTATATTT TTCATTATCTGGTACACACAAATATCAGCTTCGTGGACAGGTATGTCATGATTTGCGTAATGTATTCCCATGTGTTTTCC TCCCATAGAGTTGATTGTTCTTCTGGTCTCTACTTTTTGTTATCAATTTGGTGTCCTCAACTAATGCACCCATTTCGTTT TTCATTTTAGTTTTCGGGATCCTGGTCCTCATGGCAATGGCAGGTATTCAGAACATATGTTACCTGAAGTGGAGATTAAG GACTTCAGAAAGGGTGCTCAGGTGATTTTTTGCTTAAATTGTTTTGTTGCTGCTTGCACGATAATTTGAGTGGAAACTTT ACATATTACTATACAGGAATGTGAAATTTGAACATAGTATTTAGGCTACTTTATTTTACAATTGCCTTTTTCACAGGATA CCAATTGGATTAATGGACATGACCATGATTTACAGCAATAGGCTTTACTAGTGAGTCGTATGCAACACATTGCAGTAGTC AAGTCTTTTATCTTATAGTATAGTGGTCGATAGATTCTCAATAATAGAAGTATCTCTTTGATCTTGCCTGAAATCTCCCA CTTCCTTTTATTCCTTTAGATAGTCCAATCGGCATCCTACTGTGGTCCAATGCACCCATTTACAAGCGCATGAATGTTTT TATATAATATTAATTCGTAGCTCATTTAAATATCTCATCCATTTAGATATCTTCGCCTCACTGTTAAATTCTTTATGCAG TGGTTTTCTATGAAGCGGCAGCATGCTGATATAGTTGTGGCTGACCATCTTTATTACTCAAAATTTCAGGATTTCTGTCA GGTGTAGTTTTTAAATCTTATTGCCATTAAAAGTCCAAAGCAATTTTCTTTTATTGTTAATAGTTTGTAATTTTTCTTGT GTTACCTATTAAGTTTACTTTGAACTGGCACTGTATTCTAACCAAGCAAGTATAGCATGTTGTAATCTTTTAAGTTTTAA CATAAAAAATGAAAACATTTTGATCTATTAAACTTGTAAATGAGTCATATGTTTGACTTTGACAGTAGATGAATCAATGA TTTACCAGACTTTTGCTAATCAGAATTGACTTCCGGATCAATTCTTAAGAAGGAAGATAAGACGACCAAGACAGCAAAAA TTGACTTATGAGAGTTAGTGCATCTGCACAGAAATATTGTTTTGATTTGGAATTCTTTGTTTTAGCTTAAGTGTTTTAGC TCAAGTCTCGTGACATCTACTTAAAAAATTAAGCTTTAGACCTACGTTATTAGTTCTTCCGCTTGAAAAAAGTTCTTCTT CCCTCATTCTCTTTTCCGTTGAATATAATGAATTGGATTCATGGGAGCAACTTCATTTTTTTACTCTGATTACCAATAGC TGGAAAATTCGTTATTTTAGAAAACTACTAATGCTGACCTACTCCAAGAAAAATCATTATTAGTATGTTACGTCTTATAT GCAGAATTTAAGTTATTTGAAAAACTTCCATATCATCCTAGTATTGGATCATATTTATTTTGTTAAAACTTGCATAGCAC GTGCTTCTTCTGTTGATATTCAGAATGTTAGATCCTAAATATGCACCAGCACAGCTATTCAAATTAGAAAAGAAATGTTT TATTTTTGCAGGCAGGATAGAGTTTTTTGTGGAAATTATATTATATGGTTGAATGGCTATGGAAGTGTGATTTAATATTC TCTAAATTCAATTACATTGTTCAATTATTATTATTAATACCTTTGATATTACAGCCTGGTTTTGAAGGGAAAAATTGCAT TGCGGATGAGCATTACTTACCCACCTTCTTCAAGGTGAGAATGAGAATTTCAATTGTAAAACAAGTCTCTGTTTTGACAG GTTTCAAATTTCAGCTAATTGGCTAAGATTTGTTTTAGATTGTCGATCCTGGTGGAATTGCGAACTGGTCAGTAACTCAC GTTGACTGGTCTGAGAGGAAATGGCATCCAAAATCCTATAAGGCTCAAGATGTTACATATGGGCTTTTAAAGAATATCAC GGTATGGTGTTACTATAACTGTAACTTACACAACAAGGCCTATACAATTTTTATTCCTTAAAGAGACATCTTTGGTGCGT GTGTAAAGACTACATGTTGACTGCCAGCATATTTTGGTTCTTGTTTCTGATATTTTATTCTTTGCAGTTAGTTCTTCTAG CCACCAATTTCATTACTTAGTATAGTTGTCATTTTGCGAAACTCTTTAAAGCTTCCTATTCTGCATCATGGGAAAAAACG ATGAATATCTTATCTTCTTTTTACTTGTTGAATTGGTTTTACCAAGTTGAGCTGATGTAATGTTCATATTAACTCGCAGT CCATTGATGTAAGTGTGCACGTCACCAGTGAGAAGAAGGTATGCTATCCCATATCTGAGAGCGCTCCTGATTCTGACTTA ATGTTTCACTATTAAGCGATAGGCTTAATTGCACATTTGCTCCCTCATCTTTCATCATTGTGCAATTTGCCTCCCCCATG TTTAAAACGAGCGAATTTACTCCCTCATGTATCAATTTGTGAAAATTGACCCCTTCCGTTAGCCTTCCGTCCAATTTCTA ACGGCGATTGCTATTTTCACATCCTCTTTTTACTAACCACACCCCTCAATCAGAAACAAAAATAAAGGAAAAAATAAATG AAATAAAAATTGAATACAAATGGCTTAATTGAACAAGTCTTATCTTACCCAAACCCACCACAAAACCCACCATTGATGAA TCAAATCCAAACCACCCAACAACAATTTTCTCCATGCTTCAAAGCAACAACAATTCCACAAACAGAAAAATTGAATATTT AATTTAACAAATCAACAGCTTCATCAAGAACAACAACAATCATACCCATTGGCCATTTCGCCTATTCTAATGCTAAACCT TCTTCTCCCTCTTCCTCTTCACCATCATCTCCATCACCTCACAAGTCCCTCTAACTTTCACATGAATTTCATGAAGATTA GCAGGCCCGCACCCTCACTACACGCCCACCCCCAGTCGCGACTCCAAGAGCGTGACAGAAGAAGAGGGGATCCCCGATTT GGAAGACGAGGATCACCACCACCACCCGCATCAGCATCACCGGCAGGAGGAGGAGGAAGTGGTGAAGCAGGGGGATGTCG GTGAATCTCGGCGAGGCGTCGAGGTCGATGGTACTGGAGAGATTGAGGTTGGAGAAGTGGAGGCTAACGATGAAGTGGAG GTGGGGGCGGGTGACGAATTGGTGGTGAGAGCAGTGGAGGTTGTGGAGTGTGGGTTGGGTGGGTTTGAAGCTGATTCAAG TGGCATTGTCTTCTTACTCTCCTTACAGATCAAATGGAGTTTGAAGCTGATTCAAGTGGTAATGGGTTTGGGGGTGATTT TTGCAGGGCTTCTGGGTTTGGGGAAGAGAGAGATTTTTCTGGGTTGTGTTTGGGTAGGATTTTTCAGTTTATGGTTCCTG GGTTTTTTTCACAAGATGAAGATGAGTATTAGGTGGTAGATGAAGATTCAAATAGAGCCAGGAAGATAAAAATGATGAAG AAGAGGTTGGAATTTTTTTAATTCACAAAATAATGTTTTAATAAAAAATTACCTTTGTGGCATGATACAACCTCGGTCAT CTGTAAAAAATAGAGAGTGTAGGTGTAAATAGGAAATATGGGGTGTAAATAGCAAGCCACGTCAACTCCGTCAAACTTTA ACGGTTTACTAACGGAAGGGGTCAATTTTCACAAATTGATACATGAGGGAGTGAATTCGCTCGTTTTAAACTTGGGGGAG GAAAATTGCACAATGATGAAAGACGAGGGAGCAAATTTGCAATTAAGCCTAAGCGATATGACAAATTATAATGTGTTGCT ACAGAATGAAGTGCAAAGATGGCCTTGTTTATGGAATGGGATTCAGAAGCCATGTTACCTATTTGCTAGGAAATTCACTC CTGGAACACTGGACAATTTGTTGCAGCTTTTTTCAAATTACTCATCATTTTGAGGCAGTACTTTTTTTCGCCAATAATTG TTAGATCAGATGTAGCCTTCAGCCCCCATCTTGGTTTCTCATGGGGAAAAGGGGATTGTAAATAACAGCATTATTGAGGT TTGATCATTTGCCAACACTGTCATTGCAGGTAGGGTGGCCTAATGTACAGATAGGAGGCTTGATTTTATGGCCTTAGGGA TTGATAGCTTGACTCCCCCCTTTCCATTTTGTGGGTTATTGAAGTTTCCTAATTTCTTGACAAATTTTGGGGGAATCATA TAAAGCTCATTTCGTGGTTGGTGGTATTTGTTCATCGTTATGTGCTATGAACAAAGCTTACCAGTATTGCTATCTCATGC AATGCTTAAATTCGTGCATGCTTTTCCTGTTTTTCACGCCAAATCTATTTGTTTTCGGTTTTCTTCTT
CDS sequence (LotjaGi6g1v0238100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAACAGCAAAGTTTTGGTGCCTAAGCATGGGTGATATGCAGATCTTGCCTGGATCTCGCTACCGTCCTTCCGTGAA GAAGCCAATTTGGATTATTGTCCTGGTTTTGTTTGTGTGCGTGTTTCTCATATGTGCTTATATCTACCCCCTAAGAAGCA GTACAGCTTGTTATGTTTTTCCTTCTAGAGGGTGCAAGGTTATTGCTGATCAGCTTCCACCTCTTCCTGCAAGGGAGTAC ACCGATGATGAGATTGCATCACATGCTGTTATTAGGGATATTTTAAACACACCACCAGTTTCACAAAATCCAAAAATTGC CTTCATGTTTTTGACGCCTGGTTCTCTACCATTTGAAAAATTGTGGGATAAATTTTTCCAAGGTCATGAAGGGAAGTTCT CTGTTTATGTGCACGCATCTAAGACTAAACCAGTTCATGTGAGCCGTTATTTTGTTAATCGGGATATACGCAGCAGCCAG GTGGTATGGGGTAAAATTTCCATGATTGATGCAGAGAGACGACTATTGGCAAATGCCCTACAAGATCCTGATAACCAGCA ATTTGTTTTACTTTCTGATAGCTGTGTGCCACTCTTTAATTTTGACTATATTTTTCATTATCTGGTACACACAAATATCA GCTTCGTGGACAGTTTTCGGGATCCTGGTCCTCATGGCAATGGCAGGTATTCAGAACATATGTTACCTGAAGTGGAGATT AAGGACTTCAGAAAGGGTGCTCAGTGGTTTTCTATGAAGCGGCAGCATGCTGATATAGTTGTGGCTGACCATCTTTATTA CTCAAAATTTCAGGATTTCTGTCAGCCTGGTTTTGAAGGGAAAAATTGCATTGCGGATGAGCATTACTTACCCACCTTCT TCAAGATTGTCGATCCTGGTGGAATTGCGAACTGGTCAGTAACTCACGTTGACTGGTCTGAGAGGAAATGGCATCCAAAA TCCTATAAGGCTCAAGATGTTACATATGGGCTTTTAAAGAATATCACGGTATGGTGTTACTATAACTGTAACTTACACAA CAAGGCCTATACAATTTTTATTCCTTAA
Protein sequence (LotjaGi6g1v0238100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTAKFWCLSMGDMQILPGSRYRPSVKKPIWIIVLVLFVCVFLICAYIYPLRSSTACYVFPSRGCKVIADQLPPLPAREY TDDEIASHAVIRDILNTPPVSQNPKIAFMFLTPGSLPFEKLWDKFFQGHEGKFSVYVHASKTKPVHVSRYFVNRDIRSSQ VVWGKISMIDAERRLLANALQDPDNQQFVLLSDSCVPLFNFDYIFHYLVHTNISFVDSFRDPGPHGNGRYSEHMLPEVEI KDFRKGAQWFSMKRQHADIVVADHLYYSKFQDFCQPGFEGKNCIADEHYLPTFFKIVDPGGIANWSVTHVDWSERKWHPK SYKAQDVTYGLLKNITVWCYYNCNLHNKAYTIFIP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 9 | 335 | 327 | 3.0E-177 | – | |
| PANTHER | 9 | 335 | 327 | 3.0E-177 | – | |
| TMHMM | 29 | 51 | 23 | - | – | |
| Phobius | 30 | 49 | 20 | - | – | |
| Phobius | 50 | 355 | 306 | - | – | |
| Pfam | 106 | 335 | 230 | 1.1E-81 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi6g1v0238100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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