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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0239000 |
| Transcript ID | LotjaGi6g1v0239000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Low-molecular-weight cysteine-rich protein lcr19, putative; TAIR: AT5G38330.1 low-molecular-weight cysteine-rich 80; Swiss-Prot: sp|P82789|DF181_ARATH Defensin-like protein 181; TrEMBL-Plants: tr|K7MBS6|K7MBS6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0239000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54897719..54898436) extracted from Lotus japonicus Gifu genome v1.2.
CTAAGGTTTCTGTCTAATATAATGGCGAGCCACATCTCAAAGTACTCTATCCATTTTTTCATCATCCTAGTCATGGTTCT GGCAGGTAATAAGTTTCTCCTTTAATTTGTGATGCTAAATGATAGTATGAAAACTCACGAATCTTATACATCGATCCTTC ACTTTTTTTTAACTAATTGGGATTTAACATGGTGTGGTCTTATCTTATCAGTGGAAGGAAAACAATGTAGGCAAAATCTG GGTACATGTAAGTATGTTGCACAGTACGCAGGTTGTGACCACTATTGTCACTTTTTGTTCATAAATGGAAAGGGGAATTG CAACTCATCAGGCAATTGCGACTGTGTTTATGAATGCGGATCTGAAAGAACTTGCCATGCTATACTTGGACAGTGCAGTG ATGCGTGTGATGCAGACTGTGCAACCACATTACCTAATGGTCGTGGGGCTTGTAATTCCAAAAACACATGTGCTTGCATA TATAAATGTAATTGAGTTACTGGTTGCTCTGTTGCTGTTTTGGGTTCTTACCTTTTTCTGCTGTTGTTCTGTTTGTATTT TCTTTCTTTCTTCTTGCCGTGTTGGCTTTCTTTTTCCTGTGTTGTTGTTTTTGCTGCTACTGTTTGCTCACCAGGGAGAT GCTTGTTCCTTGGGTACGTTTTTTCTTTGGCTTAATACATCAGAAGGCCCCTGAATTTGTAAAGGGAATCAGTTCCAG
CDS sequence (LotjaGi6g1v0239000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGCCACATCTCAAAGTACTCTATCCATTTTTTCATCATCCTAGTCATGGTTCTGGCAGTGGAAGGAAAACAATG TAGGCAAAATCTGGGTACATGTAAGTATGTTGCACAGTACGCAGGTTGTGACCACTATTGTCACTTTTTGTTCATAAATG GAAAGGGGAATTGCAACTCATCAGGCAATTGCGACTGTGTTTATGAATGCGGATCTGAAAGAACTTGCCATGCTATACTT GGACAGTGCAGTGATGCGTGTGATGCAGACTGTGCAACCACATTACCTAATGGTCGTGGGGCTTGTAATTCCAAAAACAC ATGTGCTTGCATATATAAATGTAATTGA
Protein sequence (LotjaGi6g1v0239000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASHISKYSIHFFIILVMVLAVEGKQCRQNLGTCKYVAQYAGCDHYCHFLFINGKGNCNSSGNCDCVYECGSERTCHAIL GQCSDACDADCATTLPNGRGACNSKNTCACIYKCN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| PANTHER | 2 | 114 | 113 | 9.6E-13 | ||
| Phobius | 10 | 20 | 11 | - | – | |
| Phobius | 21 | 24 | 4 | - | – | |
| Phobius | 25 | 115 | 91 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0239000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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