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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0244300 |
| Transcript ID | LotjaGi6g1v0244300.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase; TAIR: AT5G44030.2 cellulose synthase A4; Swiss-Prot: sp|Q84JA6|CESA4_ARATH Cellulose synthase A catalytic subunit 4 [UDP]-forming]; TrEMBL-Plants: tr|A0A1J7FVN2|A0A1J7FVN2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0244300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55695731..55699052) extracted from Lotus japonicus Gifu genome v1.2.
TCTTTGTTGTTATCTCAATATCCATGCAAGACTTGTAGTAATTCTTGTGTGTTTTCTCCATGGCAGAGAGAATATGAAGA ATTTAAGGTGAAGATTAATGCTTTGGTGGCAAAGGCTCTGAAGAAACCAGAGGAGGGGTGGGTTATGCAGGATGGAACTC CATGGCCTGGTAACAATACTCGTGATCATCCAGGAATGATTCAGGTTTGGTTATTGAATCCTCTAGTTATAGCATGTTTT GATCAGCTTATTTCTTCTCAGAATCAATTTTGAAAACCAGAAGTTACTCACAGAAACTTCTCAAAAGAATTGATTCTGGC TTTAGAATCAATCATAGAAGAATTTCCAAACATGCTATTAGGTTTTTTTTTTGTAGTTTTGTGTACTTATCATTATCTTA TCATTAAGGAACAACCACAACAGAAAAGAAAATGAGAAACACCTTGCATTTTTGGAATGTGCATAGCCAATGAATTAGAC CCCCTCCCCCTTTAGTTAGTGGGAAAGGAAGGAAAAGATGGTTCCCATTCTTTCCATCTTTGCTTCAAATCTCAGGATAA TGTTAATAGTTTATAAGTTAAATTTTCCTATTTGAAAAAACCAAGTTTGCGTCAACAAAAGACATTAATGAGAGCAATAG TTGATCTCAAGTGATGTGCCTTTGCAGGTATATTTAGGAAGTGCTGGTGCATTAGACGTGGAAGGCAAGGAACTGCCCCG ACTTGTGTATATTTCGCGTGAGAAACGTCCTGGATATCCACATCACAAAAAAGCTGGTGCCATGAATGCTTTGGTATGTT CAAAAACTTTTGTATTGTGTAATTCCTACAGGACAAGGATACTAGAAACCTGCTTTTAACTCTTTTGCTGTTGTCTATCC CCTAAGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCATTCATGTTGAATCTGGATTGTGACCACTACATCAATAATAG CAAGGCCATAAGAGAGGCTATGTGCTTTTTAATGGATCCCCAGCTTGGGAAGAAGCTCTGCTATGTCCAATTTCCACAAA GATTTGATGGGATTGATCGCCATGATAGATATGCTAACCGCAACACTGTGTTCTTTGATGTAAGTGCCATTCTTCTAAAC TCCAACATAACAAACTTGTGAAAATTTTCATTACAATAACTGACCTTTAACAATTTGACTTCAATGTTGCTTTCATCATA GATCAATATGAAAGGGCTTGATGGGATTCAAGGTCCAGTGTATGTTGGTACTGGAACTGTGTTCAACAGGCAGGCATTAT ATGGCTATGATCCACCAGTGTCTGAGAAAAGACCAAAGATGACATGTGACTGCTGGCCATCATGGTGTTGCTTCTGTTGT GGTGGTTCAAGGAAGTCCAAGTCAAAAAAGAAATCAGGAAGAAAAGGTCTCTTCAGTGGATTGTACACCAAGAAGAAGAA AATGATGGGGAAAGATTATGTTAGGAAAGGGTCTGGTACCATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCT ATGAGGAGCTAGAGAAATCAACCCTCATGTCTCAGAAAAATTTCGAGAAGCGATTCGGTCAATCACCGGTTTTCATTGCT TCCACTTTGGTGGAAAATGGAGGACTTCCTGAAGGCACAAATACTCAATCACTAGTCAAGGAAGCTATTCATGTTATAAG CTGTGGCTATGAGGAGAAAACTGAATGGGGAAAAGAGGTAAAGCCATTAATTCCAAAACAACGAAGAAATATTTGCATCT TCTTAAATGCTTTTTATATCAAATAGGCTATGATTACTTATTAGAAATTGTTTTACAACATTAAGCAAGGTACATAGAGT TATATCTATGACTCCTTTTGACAAATTTGTTTCAATTACAGATTGGATGGATTTATGGTTCGGTCACAGAAGATATTTTG ACTGGATTTAAGATGCACTGCAGAGGATGGAAATCAGTGTATTGCATGCCAAAGAGACCAGCTTTCAAGGGATCTGCTCC AATAAATCTATCAGATCGGTTGCACCAAGTTCTGAGATGGGCCCTTGGTTCTATTGAGATTTTCCTCAGTCGTCATTGTC CATTGTGGTATGGCTATGCAGGGAAGCTCAAGTACCTAGAGAGGATGGCTTACATTAACACCATTGTTTATCCATTCACT TCCATCCCTCTCCTTGCATACTGCACAATTCCAGCTGTGTGTCTCCTCACTGGAAAATTCATCATCCCCACAGTATGTAC ACAACTATAAATTTCTTGTGATCATATTTGATTCCCTTATCAGCTTTCTGAATTTAAAAACTATTTTCAGAAACAATTAG TAAGGAAAAAACTGTTTGAGCATATGTTTTTCAAAGCTAAAAATCCTGTGATTTAGATACAGGTCTTTGAGATGTTTTGA GATTTCAGTATGTTTTCAGAACAATTTTTTAAAACTGTTTATATCAAACGAGTTTTTTTTTTTTTTTGCTCTTTCTGTTT ATAAAAACTGAAAACTGTTTTCCAAATCAGTAATAAAAAATTCTCCAGTGATTTGCTTTCACATAGTTGTTAAAAGAGAA GACATTGGGAAGGAAACCTATAATACTTCTATGAGAGACATGTCTTCTGAATGTGAGTTTGTTTTTTGTTTTTCCTGTGC AGCTGACAAACCTTGCTAGTGTTTGGTTCATGGCTCTATTTATCTCCATCATCTTGACCGGTGTGCTTGAGCTCCGGTGG AGTGGGGTTTTGATTGAAGACTGGTGGCGCAATGAGCAATTCTGGGTCATTGGAGGTGTTTCTGCTCATCTTTTTGCTGT GTTTCAAGGTCTCCTCAAAGTCCTTGCTGGAGTAGACACCAATTTCACAGTCACAGCAAAAGCAGCAGAAGATGCTGAAT TTGGAGAGCTCTATCTCTTCAAGTGGACCACTCTTCTCATCCCACCAACCACTCTTATTATCTTGAACATTGTAGGAGTT GTTGCTGGAGTCTCTGATGCTATTAACAATGGTTATGGCTCATGGGGACCTTTATTTGGGAAGCTATTTTTTGCCTTCTG GGTCATTGTTCATTTATATCCTTTCCTCAAAGGTCTCATGGGAAAGCAAAACAGGACTCCTACCATTGTGGTCCTGTGGT CAATCCTCTTGGCCTCAATTTTCTCATTGATTTGGGTCAGGATTGATCCTTTCTTGCCCAAGCAAACTGGTCCAGTTCTC AAACAATGTGGGGTGGAATGCTGAGACTATGGAGTGGCATAGAGTTGATGAATTGTTTCTTCTGGAGTCTTTTGATGATT AATGAGACTTGTGCAATTTTTTTTTATTGATACTGCTATTGA
CDS sequence (LotjaGi6g1v0244300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGATGGAACTCCATGGCCTGGTAACAATACTCGTGATCATCCAGGAATGATTCAGGTATATTTAGGAAGTGCTGG TGCATTAGACGTGGAAGGCAAGGAACTGCCCCGACTTGTGTATATTTCGCGTGAGAAACGTCCTGGATATCCACATCACA AAAAAGCTGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCATTCATGTTGAATCTGGATTGT GACCACTACATCAATAATAGCAAGGCCATAAGAGAGGCTATGTGCTTTTTAATGGATCCCCAGCTTGGGAAGAAGCTCTG CTATGTCCAATTTCCACAAAGATTTGATGGGATTGATCGCCATGATAGATATGCTAACCGCAACACTGTGTTCTTTGATA TCAATATGAAAGGGCTTGATGGGATTCAAGGTCCAGTGTATGTTGGTACTGGAACTGTGTTCAACAGGCAGGCATTATAT GGCTATGATCCACCAGTGTCTGAGAAAAGACCAAAGATGACATGTGACTGCTGGCCATCATGGTGTTGCTTCTGTTGTGG TGGTTCAAGGAAGTCCAAGTCAAAAAAGAAATCAGGAAGAAAAGGTCTCTTCAGTGGATTGTACACCAAGAAGAAGAAAA TGATGGGGAAAGATTATGTTAGGAAAGGGTCTGGTACCATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTAT GAGGAGCTAGAGAAATCAACCCTCATGTCTCAGAAAAATTTCGAGAAGCGATTCGGTCAATCACCGGTTTTCATTGCTTC CACTTTGGTGGAAAATGGAGGACTTCCTGAAGGCACAAATACTCAATCACTAGTCAAGGAAGCTATTCATGTTATAAGCT GTGGCTATGAGGAGAAAACTGAATGGGGAAAAGAGATTGGATGGATTTATGGTTCGGTCACAGAAGATATTTTGACTGGA TTTAAGATGCACTGCAGAGGATGGAAATCAGTGTATTGCATGCCAAAGAGACCAGCTTTCAAGGGATCTGCTCCAATAAA TCTATCAGATCGGTTGCACCAAGTTCTGAGATGGGCCCTTGGTTCTATTGAGATTTTCCTCAGTCGTCATTGTCCATTGT GGTATGGCTATGCAGGGAAGCTCAAGTACCTAGAGAGGATGGCTTACATTAACACCATTGTTTATCCATTCACTTCCATC CCTCTCCTTGCATACTGCACAATTCCAGCTGTGTGTCTCCTCACTGGAAAATTCATCATCCCCACACTGACAAACCTTGC TAGTGTTTGGTTCATGGCTCTATTTATCTCCATCATCTTGACCGGTGTGCTTGAGCTCCGGTGGAGTGGGGTTTTGATTG AAGACTGGTGGCGCAATGAGCAATTCTGGGTCATTGGAGGTGTTTCTGCTCATCTTTTTGCTGTGTTTCAAGGTCTCCTC AAAGTCCTTGCTGGAGTAGACACCAATTTCACAGTCACAGCAAAAGCAGCAGAAGATGCTGAATTTGGAGAGCTCTATCT CTTCAAGTGGACCACTCTTCTCATCCCACCAACCACTCTTATTATCTTGAACATTGTAGGAGTTGTTGCTGGAGTCTCTG ATGCTATTAACAATGGTTATGGCTCATGGGGACCTTTATTTGGGAAGCTATTTTTTGCCTTCTGGGTCATTGTTCATTTA TATCCTTTCCTCAAAGGTCTCATGGGAAAGCAAAACAGGACTCCTACCATTGTGGTCCTGTGGTCAATCCTCTTGGCCTC AATTTTCTCATTGATTTGGGTCAGGATTGATCCTTTCTTGCCCAAGCAAACTGGTCCAGTTCTCAAACAATGTGGGGTGG AATGCTGA
Protein sequence (LotjaGi6g1v0244300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDC DHYINNSKAIREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALY GYDPPVSEKRPKMTCDCWPSWCCFCCGGSRKSKSKKKSGRKGLFSGLYTKKKKMMGKDYVRKGSGTMFDLEEIEEGLEGY EELEKSTLMSQKNFEKRFGQSPVFIASTLVENGGLPEGTNTQSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTG FKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSIEIFLSRHCPLWYGYAGKLKYLERMAYINTIVYPFTSI PLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVLIEDWWRNEQFWVIGGVSAHLFAVFQGLL KVLAGVDTNFTVTAKAAEDAEFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHL YPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKQCGVEC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 608 | 608 | 0.0 | ||
| PANTHER | 1 | 613 | 613 | 0.0 | – | |
| PANTHER | 1 | 613 | 613 | 0.0 | – | |
| Phobius | 1 | 392 | 392 | - | – | |
| Gene3D | 19 | 163 | 145 | 8.1E-14 | ||
| SUPERFAMILY | 33 | 418 | 386 | 2.25E-7 | ||
| TMHMM | 392 | 414 | 23 | - | – | |
| Phobius | 393 | 414 | 22 | - | – | |
| Phobius | 415 | 425 | 11 | - | – | |
| Phobius | 426 | 444 | 19 | - | – | |
| TMHMM | 426 | 448 | 23 | - | – | |
| Phobius | 445 | 463 | 19 | - | – | |
| TMHMM | 463 | 485 | 23 | - | – | |
| Phobius | 464 | 484 | 21 | - | – | |
| Phobius | 485 | 504 | 20 | - | – | |
| Phobius | 505 | 526 | 22 | - | – | |
| TMHMM | 505 | 527 | 23 | - | – | |
| Phobius | 527 | 545 | 19 | - | – | |
| TMHMM | 542 | 564 | 23 | - | – | |
| Phobius | 546 | 564 | 19 | - | – | |
| Phobius | 565 | 575 | 11 | - | – | |
| Phobius | 576 | 596 | 21 | - | – | |
| TMHMM | 577 | 596 | 20 | - | – | |
| Phobius | 597 | 615 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi6g1v0244300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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