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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0244300 |
| Transcript ID | LotjaGi6g1v0244300.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase; TAIR: AT5G44030.1 cellulose synthase A4; Swiss-Prot: sp|Q84JA6|CESA4_ARATH Cellulose synthase A catalytic subunit 4 [UDP]-forming]; TrEMBL-Plants: tr|A0A1J7FVN2|A0A1J7FVN2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0244300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55695829..55700834) extracted from Lotus japonicus Gifu genome v1.2.
TGTCTACTATATTCATTTTTCCATTTTTTTTTTCTCTTTTTGGTTTTTTTCAGCATCAGCCTCCTCCTCCTTCTCATCAA CCTTCATCGAAAACATGTCGAGTTTGTGGTGATGAGGTTGGAATTAAGGAAGATGGGGAGCTTTTTGTGGCTTGTCATGT GTGTGGATTTCCTGTTTGCCGACCTTGTTATGAGTATGAGAGGAGTGAAGGGAACCAGTGCTGCCCTCAATGCAGCACTC GCTATAAGCGTCACAAAGGTTGGCATATATAGCTCTCTGTCACTGTATGAAATTGTGTTATTTATAAGGACTTGGTTTTG TTAGTAAAAAAATGTAGGCTTGATAACTTATATAGATATGGTGATGGTGGCTTCCCCTGCAGGTTGTCCTAGAGTGGCTG GAGATGAAGAGGATAACTTTGATGCAGATGATTTTGAGGATGAATTTCAGCTTAAGAATCGTCATGATGATCTAGATCAG CACCGTGATGGAAGTCATGTGGTAATTTGTTCTAATCATAAGATAGAAGAATCATAAATGAGAAATCAGCTTCTCTTAAA AAATTCATGCAAGGCAAAAGTTGTTAATCTTAGATGCTTTTCCATGAATGGGGTTTCACTAAAATGAATCAGAAAATTCG CACTATGACTAGTGCTAATTAATTGAATATGAATCATTAAAGAAGCTATGGGTCTGTTGTGACTTTTACAGGAAAATGGG GACTACAATCAACAGAAATTGCATTCCAATGGCCAAGTTTTCTCTTCAGCAGGAAGTGGTAAGAAACTTATTTAATTTTG CTAAGTATCCATGATAATGATTGTCTTTCTGAGAAATTCTCTTTTATTAATGTATTGGTGTACTGTTTTATAGTCACTGG CAAGGATTTTGAAGGGGAGAAAGATCTCAACAGTAATGCAGAATGGCAAGAAAGAGTAGAGAAATGGAAAGTCAGGCAAG AAAAGAAAGGTCTACTAAACAAAGAGGAGGGGAAAGAAGATCCAGGTGAAGATGATGATTATCTGTAAGTGAACTCTTCA GAGCTTGTCTAATTTAAAGTATACCACAAGGCACAATGTAATTTAACTGGTACTGATTTTTCTTTTTGGCACTTCACAGT TTGGCTGAAGCTAGGCAACCACTGTGGCGAAAGGTTCCAATATCTTCAAGCTTAATCAATCCATACCGCATAGTAATTGT GATGAGGCTGGTTATCCTAGCTTTCTTCTTTCGATTCCGTATCTTAACACCAGCATATGATGCATATCCCTTGTGGCTTA TCTCTGTGATATGTGAGATATGGTTTGCACTGTCATGGATACTTGATCAGTTCCCCAAGTGGCTCCCCATCACCCGCGAA ACTTACCTGGACCGTTTGTCCATAAGGTTTGAGCGCGAAGGCGAGCCAAACCAGCTTTCCCCAGTTGATGTCTATGTGAG TACTGTGGACCCTTTGAAGGAACCACCAATTATAACAGCAAACACTGTTCTGTCAATCCTCTCTGTTGATTACCCTGTGG ACAAGGTCAGCTGCTATGTCTCAGATGATGGTGCTTCAATGCTTCTGTTTGATTCACTGGCAGAAACTGCTGAGTTTGCA AGAAGATGGGTTCCTTTTTCCAAGAAGTATAACATAGAGCCAAGGGCTCCTGAGTACTACTTCTCTGAGAAAATTGATTA CTTGAAGGATAAGGTGCAGCCTACATTTGTGAAGGAAAGAAGGGCTATGAAGGTGGGAGAAAAAAGATAGAATAAGAAAT ATGATCTTATGTTTTAAGTTTTTCTTTGTTGTTATCTCAATATCCATGCAAGACTTGTAGTAATTCTTGTGTGTTTTCTC CATGGCAGAGAGAATATGAAGAATTTAAGGTGAAGATTAATGCTTTGGTGGCAAAGGCTCTGAAGAAACCAGAGGAGGGG TGGGTTATGCAGGATGGAACTCCATGGCCTGGTAACAATACTCGTGATCATCCAGGAATGATTCAGGTTTGGTTATTGAA TCCTCTAGTTATAGCATGTTTTGATCAGCTTATTTCTTCTCAGAATCAATTTTGAAAACCAGAAGTTACTCACAGAAACT TCTCAAAAGAATTGATTCTGGCTTTAGAATCAATCATAGAAGAATTTCCAAACATGCTATTAGGTTTTTTTTTTGTAGTT TTGTGTACTTATCATTATCTTATCATTAAGGAACAACCACAACAGAAAAGAAAATGAGAAACACCTTGCATTTTTGGAAT GTGCATAGCCAATGAATTAGACCCCCTCCCCCTTTAGTTAGTGGGAAAGGAAGGAAAAGATGGTTCCCATTCTTTCCATC TTTGCTTCAAATCTCAGGATAATGTTAATAGTTTATAAGTTAAATTTTCCTATTTGAAAAAACCAAGTTTGCGTCAACAA AAGACATTAATGAGAGCAATAGTTGATCTCAAGTGATGTGCCTTTGCAGGTATATTTAGGAAGTGCTGGTGCATTAGACG TGGAAGGCAAGGAACTGCCCCGACTTGTGTATATTTCGCGTGAGAAACGTCCTGGATATCCACATCACAAAAAAGCTGGT GCCATGAATGCTTTGGTATGTTCAAAAACTTTTGTATTGTGTAATTCCTACAGGACAAGGATACTAGAAACCTGCTTTTA ACTCTTTTGCTGTTGTCTATCCCCTAAGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCATTCATGTTGAATCTGGATT GTGACCACTACATCAATAATAGCAAGGCCATAAGAGAGGCTATGTGCTTTTTAATGGATCCCCAGCTTGGGAAGAAGCTC TGCTATGTCCAATTTCCACAAAGATTTGATGGGATTGATCGCCATGATAGATATGCTAACCGCAACACTGTGTTCTTTGA TGTAAGTGCCATTCTTCTAAACTCCAACATAACAAACTTGTGAAAATTTTCATTACAATAACTGACCTTTAACAATTTGA CTTCAATGTTGCTTTCATCATAGATCAATATGAAAGGGCTTGATGGGATTCAAGGTCCAGTGTATGTTGGTACTGGAACT GTGTTCAACAGGCAGGCATTATATGGCTATGATCCACCAGTGTCTGAGAAAAGACCAAAGATGACATGTGACTGCTGGCC ATCATGGTGTTGCTTCTGTTGTGGTGGTTCAAGGAAGTCCAAGTCAAAAAAGAAATCAGGAAGAAAAGGTCTCTTCAGTG GATTGTACACCAAGAAGAAGAAAATGATGGGGAAAGATTATGTTAGGAAAGGGTCTGGTACCATGTTTGATCTTGAAGAG ATTGAAGAAGGGCTTGAAGGCTATGAGGAGCTAGAGAAATCAACCCTCATGTCTCAGAAAAATTTCGAGAAGCGATTCGG TCAATCACCGGTTTTCATTGCTTCCACTTTGGTGGAAAATGGAGGACTTCCTGAAGGCACAAATACTCAATCACTAGTCA AGGAAGCTATTCATGTTATAAGCTGTGGCTATGAGGAGAAAACTGAATGGGGAAAAGAGGTAAAGCCATTAATTCCAAAA CAACGAAGAAATATTTGCATCTTCTTAAATGCTTTTTATATCAAATAGGCTATGATTACTTATTAGAAATTGTTTTACAA CATTAAGCAAGGTACATAGAGTTATATCTATGACTCCTTTTGACAAATTTGTTTCAATTACAGATTGGATGGATTTATGG TTCGGTCACAGAAGATATTTTGACTGGATTTAAGATGCACTGCAGAGGATGGAAATCAGTGTATTGCATGCCAAAGAGAC CAGCTTTCAAGGGATCTGCTCCAATAAATCTATCAGATCGGTTGCACCAAGTTCTGAGATGGGCCCTTGGTTCTATTGAG ATTTTCCTCAGTCGTCATTGTCCATTGTGGTATGGCTATGCAGGGAAGCTCAAGTACCTAGAGAGGATGGCTTACATTAA CACCATTGTTTATCCATTCACTTCCATCCCTCTCCTTGCATACTGCACAATTCCAGCTGTGTGTCTCCTCACTGGAAAAT TCATCATCCCCACAGTATGTACACAACTATAAATTTCTTGTGATCATATTTGATTCCCTTATCAGCTTTCTGAATTTAAA AACTATTTTCAGAAACAATTAGTAAGGAAAAAACTGTTTGAGCATATGTTTTTCAAAGCTAAAAATCCTGTGATTTAGAT ACAGGTCTTTGAGATGTTTTGAGATTTCAGTATGTTTTCAGAACAATTTTTTAAAACTGTTTATATCAAACGAGTTTTTT TTTTTTTTTGCTCTTTCTGTTTATAAAAACTGAAAACTGTTTTCCAAATCAGTAATAAAAAATTCTCCAGTGATTTGCTT TCACATAGTTGTTAAAAGAGAAGACATTGGGAAGGAAACCTATAATACTTCTATGAGAGACATGTCTTCTGAATGTGAGT TTGTTTTTTGTTTTTCCTGTGCAGCTGACAAACCTTGCTAGTGTTTGGTTCATGGCTCTATTTATCTCCATCATCTTGAC CGGTGTGCTTGAGCTCCGGTGGAGTGGGGTTTTGATTGAAGACTGGTGGCGCAATGAGCAATTCTGGGTCATTGGAGGTG TTTCTGCTCATCTTTTTGCTGTGTTTCAAGGTCTCCTCAAAGTCCTTGCTGGAGTAGACACCAATTTCACAGTCACAGCA AAAGCAGCAGAAGATGCTGAATTTGGAGAGCTCTATCTCTTCAAGTGGACCACTCTTCTCATCCCACCAACCACTCTTAT TATCTTGAACATTGTAGGAGTTGTTGCTGGAGTCTCTGATGCTATTAACAATGGTTATGGCTCATGGGGACCTTTATTTG GGAAGCTATTTTTTGCCTTCTGGGTCATTGTTCATTTATATCCTTTCCTCAAAGGTCTCATGGGAAAGCAAAACAGGACT CCTACCATTGTGGTCCTGTGGTCAATCCTCTTGGCCTCAATTTTCTCATTGATTTGGGTCAGGATTGATCCTTTCTTGCC CAAGCAAACTGGTCCAGTTCTCAAACAATGTGGGGTGGAATGCTGA
CDS sequence (LotjaGi6g1v0244300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCTGGTTATCCTAGCTTTCTTCTTTCGATTCCGTATCTTAACACCAGCATATGATGCATATCCCTTGTGGCTTAT CTCTGTGATATGTGAGATATGGTTTGCACTGTCATGGATACTTGATCAGTTCCCCAAGTGGCTCCCCATCACCCGCGAAA CTTACCTGGACCGTTTGTCCATAAGGTTTGAGCGCGAAGGCGAGCCAAACCAGCTTTCCCCAGTTGATGTCTATGTGAGT ACTGTGGACCCTTTGAAGGAACCACCAATTATAACAGCAAACACTGTTCTGTCAATCCTCTCTGTTGATTACCCTGTGGA CAAGGTCAGCTGCTATGTCTCAGATGATGGTGCTTCAATGCTTCTGTTTGATTCACTGGCAGAAACTGCTGAGTTTGCAA GAAGATGGGTTCCTTTTTCCAAGAAGTATAACATAGAGCCAAGGGCTCCTGAGTACTACTTCTCTGAGAAAATTGATTAC TTGAAGGATAAGGTGCAGCCTACATTTGTGAAGGAAAGAAGGGCTATGAAGAGAGAATATGAAGAATTTAAGGTGAAGAT TAATGCTTTGGTGGCAAAGGCTCTGAAGAAACCAGAGGAGGGGTGGGTTATGCAGGATGGAACTCCATGGCCTGGTAACA ATACTCGTGATCATCCAGGAATGATTCAGGTATATTTAGGAAGTGCTGGTGCATTAGACGTGGAAGGCAAGGAACTGCCC CGACTTGTGTATATTTCGCGTGAGAAACGTCCTGGATATCCACATCACAAAAAAGCTGGTGCCATGAATGCTTTGGTTCG AGTTTCTGCTGTGCTTACAAATGCACCATTCATGTTGAATCTGGATTGTGACCACTACATCAATAATAGCAAGGCCATAA GAGAGGCTATGTGCTTTTTAATGGATCCCCAGCTTGGGAAGAAGCTCTGCTATGTCCAATTTCCACAAAGATTTGATGGG ATTGATCGCCATGATAGATATGCTAACCGCAACACTGTGTTCTTTGATATCAATATGAAAGGGCTTGATGGGATTCAAGG TCCAGTGTATGTTGGTACTGGAACTGTGTTCAACAGGCAGGCATTATATGGCTATGATCCACCAGTGTCTGAGAAAAGAC CAAAGATGACATGTGACTGCTGGCCATCATGGTGTTGCTTCTGTTGTGGTGGTTCAAGGAAGTCCAAGTCAAAAAAGAAA TCAGGAAGAAAAGGTCTCTTCAGTGGATTGTACACCAAGAAGAAGAAAATGATGGGGAAAGATTATGTTAGGAAAGGGTC TGGTACCATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTATGAGGAGCTAGAGAAATCAACCCTCATGTCTC AGAAAAATTTCGAGAAGCGATTCGGTCAATCACCGGTTTTCATTGCTTCCACTTTGGTGGAAAATGGAGGACTTCCTGAA GGCACAAATACTCAATCACTAGTCAAGGAAGCTATTCATGTTATAAGCTGTGGCTATGAGGAGAAAACTGAATGGGGAAA AGAGATTGGATGGATTTATGGTTCGGTCACAGAAGATATTTTGACTGGATTTAAGATGCACTGCAGAGGATGGAAATCAG TGTATTGCATGCCAAAGAGACCAGCTTTCAAGGGATCTGCTCCAATAAATCTATCAGATCGGTTGCACCAAGTTCTGAGA TGGGCCCTTGGTTCTATTGAGATTTTCCTCAGTCGTCATTGTCCATTGTGGTATGGCTATGCAGGGAAGCTCAAGTACCT AGAGAGGATGGCTTACATTAACACCATTGTTTATCCATTCACTTCCATCCCTCTCCTTGCATACTGCACAATTCCAGCTG TGTGTCTCCTCACTGGAAAATTCATCATCCCCACACTGACAAACCTTGCTAGTGTTTGGTTCATGGCTCTATTTATCTCC ATCATCTTGACCGGTGTGCTTGAGCTCCGGTGGAGTGGGGTTTTGATTGAAGACTGGTGGCGCAATGAGCAATTCTGGGT CATTGGAGGTGTTTCTGCTCATCTTTTTGCTGTGTTTCAAGGTCTCCTCAAAGTCCTTGCTGGAGTAGACACCAATTTCA CAGTCACAGCAAAAGCAGCAGAAGATGCTGAATTTGGAGAGCTCTATCTCTTCAAGTGGACCACTCTTCTCATCCCACCA ACCACTCTTATTATCTTGAACATTGTAGGAGTTGTTGCTGGAGTCTCTGATGCTATTAACAATGGTTATGGCTCATGGGG ACCTTTATTTGGGAAGCTATTTTTTGCCTTCTGGGTCATTGTTCATTTATATCCTTTCCTCAAAGGTCTCATGGGAAAGC AAAACAGGACTCCTACCATTGTGGTCCTGTGGTCAATCCTCTTGGCCTCAATTTTCTCATTGATTTGGGTCAGGATTGAT CCTTTCTTGCCCAAGCAAACTGGTCCAGTTCTCAAACAATGTGGGGTGGAATGCTGA
Protein sequence (LotjaGi6g1v0244300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLVILAFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWLPITRETYLDRLSIRFEREGEPNQLSPVDVYVS TVDPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDGASMLLFDSLAETAEFARRWVPFSKKYNIEPRAPEYYFSEKIDY LKDKVQPTFVKERRAMKREYEEFKVKINALVAKALKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELP RLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQLGKKLCYVQFPQRFDG IDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCFCCGGSRKSKSKKK SGRKGLFSGLYTKKKKMMGKDYVRKGSGTMFDLEEIEEGLEGYEELEKSTLMSQKNFEKRFGQSPVFIASTLVENGGLPE GTNTQSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLR WALGSIEIFLSRHCPLWYGYAGKLKYLERMAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFIS IILTGVLELRWSGVLIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAAEDAEFGELYLFKWTTLLIPP TTLIILNIVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRID PFLPKQTGPVLKQCGVEC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 816 | 816 | 0.0 | – | |
| PANTHER | 1 | 816 | 816 | 0.0 | – | |
| TMHMM | 21 | 40 | 20 | - | – | |
| Phobius | 21 | 41 | 21 | - | – | |
| Phobius | 42 | 595 | 554 | - | – | |
| Pfam | 75 | 811 | 737 | 0.0 | ||
| SUPERFAMILY | 88 | 620 | 533 | 3.09E-10 | ||
| Coils | 173 | 193 | 21 | - | – | |
| Gene3D | 181 | 366 | 186 | 7.9E-14 | ||
| TMHMM | 595 | 617 | 23 | - | – | |
| Phobius | 596 | 617 | 22 | - | – | |
| Phobius | 618 | 628 | 11 | - | – | |
| Phobius | 629 | 647 | 19 | - | – | |
| TMHMM | 629 | 651 | 23 | - | – | |
| Phobius | 648 | 666 | 19 | - | – | |
| TMHMM | 666 | 688 | 23 | - | – | |
| Phobius | 667 | 687 | 21 | - | – | |
| Phobius | 688 | 707 | 20 | - | – | |
| Phobius | 708 | 729 | 22 | - | – | |
| TMHMM | 708 | 730 | 23 | - | – | |
| Phobius | 730 | 748 | 19 | - | – | |
| TMHMM | 745 | 767 | 23 | - | – | |
| Phobius | 749 | 767 | 19 | - | – | |
| Phobius | 768 | 778 | 11 | - | – | |
| Phobius | 779 | 799 | 21 | - | – | |
| TMHMM | 780 | 799 | 20 | - | – | |
| Phobius | 800 | 818 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi6g1v0244300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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