Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi6g1v0244300 |
Transcript ID | LotjaGi6g1v0244300.5 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Cellulose synthase; TAIR: AT5G44030.1 cellulose synthase A4; Swiss-Prot: sp|Q84JA6|CESA4_ARATH Cellulose synthase A catalytic subunit 4 [UDP]-forming]; TrEMBL-Plants: tr|A0A1J7FVN2|A0A1J7FVN2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0244300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55695829..55700921) extracted from Lotus japonicus Gifu genome v1.2.
TTGTTAGTTATGTCTCTTAGAAACTACTCAAAAGGACTTCCAAACACGCACTTAACATTAATATATTCCATGTTAGTTTC TCATGCATGTCTACTATATTCATTTTTCCATTTTTTTTTTCTCTTTTTGGTTTTTTTCAGCATCAGCCTCCTCCTCCTTC TCATCAACCTTCATCGAAAACATGTCGAGTTTGTGGTGATGAGGTTGGAATTAAGGAAGATGGGGAGCTTTTTGTGGCTT GTCATGTGTGTGGATTTCCTGTTTGCCGACCTTGTTATGAGTATGAGAGGAGTGAAGGGAACCAGTGCTGCCCTCAATGC AGCACTCGCTATAAGCGTCACAAAGGTTGGCATATATAGCTCTCTGTCACTGTATGAAATTGTGTTATTTATAAGGACTT GGTTTTGTTAGTAAAAAAATGTAGGCTTGATAACTTATATAGATATGGTGATGGTGGCTTCCCCTGCAGGTTGTCCTAGA GTGGCTGGAGATGAAGAGGATAACTTTGATGCAGATGATTTTGAGGATGAATTTCAGCTTAAGAATCGTCATGATGATCT AGATCAGCACCGTGATGGAAGTCATGTGGTAATTTGTTCTAATCATAAGATAGAAGAATCATAAATGAGAAATCAGCTTC TCTTAAAAAATTCATGCAAGGCAAAAGTTGTTAATCTTAGATGCTTTTCCATGAATGGGGTTTCACTAAAATGAATCAGA AAATTCGCACTATGACTAGTGCTAATTAATTGAATATGAATCATTAAAGAAGCTATGGGTCTGTTGTGACTTTTACAGGA AAATGGGGACTACAATCAACAGAAATTGCATTCCAATGGCCAAGTTTTCTCTTCAGCAGGAAGTGGTAAGAAACTTATTT AATTTTGCTAAGTATCCATGATAATGATTGTCTTTCTGAGAAATTCTCTTTTATTAATGTATTGGTGTACTGTTTTATAG TCACTGGCAAGGATTTTGAAGGGGAGAAAGATCTCAACAGTAATGCAGAATGGCAAGAAAGAGTAGAGAAATGGAAAGTC AGGCAAGAAAAGAAAGGTCTACTAAACAAAGAGGAGGGGAAAGAAGATCCAGGTGAAGATGATGATTATCTGTAAGTGAA CTCTTCAGAGCTTGTCTAATTTAAAGTATACCACAAGGCACAATGTAATTTAACTGGTACTGATTTTTCTTTTTGGCACT TCACAGTTTGGCTGAAGCTAGGCAACCACTGTGGCGAAAGGTTCCAATATCTTCAAGCTTAATCAATCCATACCGCATAG TAATTGTGATGAGGCTGGTTATCCTAGCTTTCTTCTTTCGATTCCGTATCTTAACACCAGCATATGATGCATATCCCTTG TGGCTTATCTCTGTGATATGTGAGATATGGTTTGCACTGTCATGGATACTTGATCAGTTCCCCAAGTGGCTCCCCATCAC CCGCGAAACTTACCTGGACCGTTTGTCCATAAGGTTTGAGCGCGAAGGCGAGCCAAACCAGCTTTCCCCAGTTGATGTCT ATGTGAGTACTGTGGACCCTTTGAAGGAACCACCAATTATAACAGCAAACACTGTTCTGTCAATCCTCTCTGTTGATTAC CCTGTGGACAAGGTCAGCTGCTATGTCTCAGATGATGGTGCTTCAATGCTTCTGTTTGATTCACTGGCAGAAACTGCTGA GTTTGCAAGAAGATGGGTTCCTTTTTCCAAGAAGTATAACATAGAGCCAAGGGCTCCTGAGTACTACTTCTCTGAGAAAA TTGATTACTTGAAGGATAAGGTGCAGCCTACATTTGTGAAGGAAAGAAGGGCTATGAAGGTGGGAGAAAAAAGATAGAAT AAGAAATATGATCTTATGTTTTAAGTTTTTCTTTGTTGTTATCTCAATATCCATGCAAGACTTGTAGTAATTCTTGTGTG TTTTCTCCATGGCAGAGAGAATATGAAGAATTTAAGGTGAAGATTAATGCTTTGGTGGCAAAGGCTCTGAAGAAACCAGA GGAGGGGTGGGTTATGCAGGATGGAACTCCATGGCCTGGTAACAATACTCGTGATCATCCAGGAATGATTCAGGTTTGGT TATTGAATCCTCTAGTTATAGCATGTTTTGATCAGCTTATTTCTTCTCAGAATCAATTTTGAAAACCAGAAGTTACTCAC AGAAACTTCTCAAAAGAATTGATTCTGGCTTTAGAATCAATCATAGAAGAATTTCCAAACATGCTATTAGGTTTTTTTTT TGTAGTTTTGTGTACTTATCATTATCTTATCATTAAGGAACAACCACAACAGAAAAGAAAATGAGAAACACCTTGCATTT TTGGAATGTGCATAGCCAATGAATTAGACCCCCTCCCCCTTTAGTTAGTGGGAAAGGAAGGAAAAGATGGTTCCCATTCT TTCCATCTTTGCTTCAAATCTCAGGATAATGTTAATAGTTTATAAGTTAAATTTTCCTATTTGAAAAAACCAAGTTTGCG TCAACAAAAGACATTAATGAGAGCAATAGTTGATCTCAAGTGATGTGCCTTTGCAGGTATATTTAGGAAGTGCTGGTGCA TTAGACGTGGAAGGCAAGGAACTGCCCCGACTTGTGTATATTTCGCGTGAGAAACGTCCTGGATATCCACATCACAAAAA AGCTGGTGCCATGAATGCTTTGGTATGTTCAAAAACTTTTGTATTGTGTAATTCCTACAGGACAAGGATACTAGAAACCT GCTTTTAACTCTTTTGCTGTTGTCTATCCCCTAAGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCATTCATGTTGAAT CTGGATTGTGACCACTACATCAATAATAGCAAGGCCATAAGAGAGGCTATGTGCTTTTTAATGGATCCCCAGCTTGGGAA GAAGCTCTGCTATGTCCAATTTCCACAAAGATTTGATGGGATTGATCGCCATGATAGATATGCTAACCGCAACACTGTGT TCTTTGATGTAAGTGCCATTCTTCTAAACTCCAACATAACAAACTTGTGAAAATTTTCATTACAATAACTGACCTTTAAC AATTTGACTTCAATGTTGCTTTCATCATAGATCAATATGAAAGGGCTTGATGGGATTCAAGGTCCAGTGTATGTTGGTAC TGGAACTGTGTTCAACAGGCAGGCATTATATGGCTATGATCCACCAGTGTCTGAGAAAAGACCAAAGATGACATGTGACT GCTGGCCATCATGGTGTTGCTTCTGTTGTGGTGGTTCAAGGAAGTCCAAGTCAAAAAAGAAATCAGGAAGAAAAGGTCTC TTCAGTGGATTGTACACCAAGAAGAAGAAAATGATGGGGAAAGATTATGTTAGGAAAGGGTCTGGTACCATGTTTGATCT TGAAGAGATTGAAGAAGGGCTTGAAGGCTATGAGGAGCTAGAGAAATCAACCCTCATGTCTCAGAAAAATTTCGAGAAGC GATTCGGTCAATCACCGGTTTTCATTGCTTCCACTTTGGTGGAAAATGGAGGACTTCCTGAAGGCACAAATACTCAATCA CTAGTCAAGGAAGCTATTCATGTTATAAGCTGTGGCTATGAGGAGAAAACTGAATGGGGAAAAGAGGTAAAGCCATTAAT TCCAAAACAACGAAGAAATATTTGCATCTTCTTAAATGCTTTTTATATCAAATAGGCTATGATTACTTATTAGAAATTGT TTTACAACATTAAGCAAGGTACATAGAGTTATATCTATGACTCCTTTTGACAAATTTGTTTCAATTACAGATTGGATGGA TTTATGGTTCGGTCACAGAAGATATTTTGACTGGATTTAAGATGCACTGCAGAGGATGGAAATCAGTGTATTGCATGCCA AAGAGACCAGCTTTCAAGGGATCTGCTCCAATAAATCTATCAGATCGGTTGCACCAAGTTCTGAGATGGGCCCTTGGTTC TATTGAGATTTTCCTCAGTCGTCATTGTCCATTGTGGTATGGCTATGCAGGGAAGCTCAAGTACCTAGAGAGGATGGCTT ACATTAACACCATTGTTTATCCATTCACTTCCATCCCTCTCCTTGCATACTGCACAATTCCAGCTGTGTGTCTCCTCACT GGAAAATTCATCATCCCCACAGTATGTACACAACTATAAATTTCTTGTGATCATATTTGATTCCCTTATCAGCTTTCTGA ATTTAAAAACTATTTTCAGAAACAATTAGTAAGGAAAAAACTGTTTGAGCATATGTTTTTCAAAGCTAAAAATCCTGTGA TTTAGATACAGGTCTTTGAGATGTTTTGAGATTTCAGTATGTTTTCAGAACAATTTTTTAAAACTGTTTATATCAAACGA GTTTTTTTTTTTTTTTGCTCTTTCTGTTTATAAAAACTGAAAACTGTTTTCCAAATCAGTAATAAAAAATTCTCCAGTGA TTTGCTTTCACATAGTTGTTAAAAGAGAAGACATTGGGAAGGAAACCTATAATACTTCTATGAGAGACATGTCTTCTGAA TGTGAGTTTGTTTTTTGTTTTTCCTGTGCAGCTGACAAACCTTGCTAGTGTTTGGTTCATGGCTCTATTTATCTCCATCA TCTTGACCGGTGTGCTTGAGCTCCGGTGGAGTGGGGTTTTGATTGAAGACTGGTGGCGCAATGAGCAATTCTGGGTCATT GGAGGTGTTTCTGCTCATCTTTTTGCTGTGTTTCAAGGTCTCCTCAAAGTCCTTGCTGGAGTAGACACCAATTTCACAGT CACAGCAAAAGCAGCAGAAGATGCTGAATTTGGAGAGCTCTATCTCTTCAAGTGGACCACTCTTCTCATCCCACCAACCA CTCTTATTATCTTGAACATTGTAGGAGTTGTTGCTGGAGTCTCTGATGCTATTAACAATGGTTATGGCTCATGGGGACCT TTATTTGGGAAGCTATTTTTTGCCTTCTGGGTCATTGTTCATTTATATCCTTTCCTCAAAGGTCTCATGGGAAAGCAAAA CAGGACTCCTACCATTGTGGTCCTGTGGTCAATCCTCTTGGCCTCAATTTTCTCATTGATTTGGGTCAGGATTGATCCTT TCTTGCCCAAGCAAACTGGTCCAGTTCTCAAACAATGTGGGGTGGAATGCTGA
CDS sequence (LotjaGi6g1v0244300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCTGGTTATCCTAGCTTTCTTCTTTCGATTCCGTATCTTAACACCAGCATATGATGCATATCCCTTGTGGCTTAT CTCTGTGATATGTGAGATATGGTTTGCACTGTCATGGATACTTGATCAGTTCCCCAAGTGGCTCCCCATCACCCGCGAAA CTTACCTGGACCGTTTGTCCATAAGGTTTGAGCGCGAAGGCGAGCCAAACCAGCTTTCCCCAGTTGATGTCTATGTGAGT ACTGTGGACCCTTTGAAGGAACCACCAATTATAACAGCAAACACTGTTCTGTCAATCCTCTCTGTTGATTACCCTGTGGA CAAGGTCAGCTGCTATGTCTCAGATGATGGTGCTTCAATGCTTCTGTTTGATTCACTGGCAGAAACTGCTGAGTTTGCAA GAAGATGGGTTCCTTTTTCCAAGAAGTATAACATAGAGCCAAGGGCTCCTGAGTACTACTTCTCTGAGAAAATTGATTAC TTGAAGGATAAGGTGCAGCCTACATTTGTGAAGGAAAGAAGGGCTATGAAGAGAGAATATGAAGAATTTAAGGTGAAGAT TAATGCTTTGGTGGCAAAGGCTCTGAAGAAACCAGAGGAGGGGTGGGTTATGCAGGATGGAACTCCATGGCCTGGTAACA ATACTCGTGATCATCCAGGAATGATTCAGGTATATTTAGGAAGTGCTGGTGCATTAGACGTGGAAGGCAAGGAACTGCCC CGACTTGTGTATATTTCGCGTGAGAAACGTCCTGGATATCCACATCACAAAAAAGCTGGTGCCATGAATGCTTTGGTTCG AGTTTCTGCTGTGCTTACAAATGCACCATTCATGTTGAATCTGGATTGTGACCACTACATCAATAATAGCAAGGCCATAA GAGAGGCTATGTGCTTTTTAATGGATCCCCAGCTTGGGAAGAAGCTCTGCTATGTCCAATTTCCACAAAGATTTGATGGG ATTGATCGCCATGATAGATATGCTAACCGCAACACTGTGTTCTTTGATATCAATATGAAAGGGCTTGATGGGATTCAAGG TCCAGTGTATGTTGGTACTGGAACTGTGTTCAACAGGCAGGCATTATATGGCTATGATCCACCAGTGTCTGAGAAAAGAC CAAAGATGACATGTGACTGCTGGCCATCATGGTGTTGCTTCTGTTGTGGTGGTTCAAGGAAGTCCAAGTCAAAAAAGAAA TCAGGAAGAAAAGGTCTCTTCAGTGGATTGTACACCAAGAAGAAGAAAATGATGGGGAAAGATTATGTTAGGAAAGGGTC TGGTACCATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTATGAGGAGCTAGAGAAATCAACCCTCATGTCTC AGAAAAATTTCGAGAAGCGATTCGGTCAATCACCGGTTTTCATTGCTTCCACTTTGGTGGAAAATGGAGGACTTCCTGAA GGCACAAATACTCAATCACTAGTCAAGGAAGCTATTCATGTTATAAGCTGTGGCTATGAGGAGAAAACTGAATGGGGAAA AGAGATTGGATGGATTTATGGTTCGGTCACAGAAGATATTTTGACTGGATTTAAGATGCACTGCAGAGGATGGAAATCAG TGTATTGCATGCCAAAGAGACCAGCTTTCAAGGGATCTGCTCCAATAAATCTATCAGATCGGTTGCACCAAGTTCTGAGA TGGGCCCTTGGTTCTATTGAGATTTTCCTCAGTCGTCATTGTCCATTGTGGTATGGCTATGCAGGGAAGCTCAAGTACCT AGAGAGGATGGCTTACATTAACACCATTGTTTATCCATTCACTTCCATCCCTCTCCTTGCATACTGCACAATTCCAGCTG TGTGTCTCCTCACTGGAAAATTCATCATCCCCACACTGACAAACCTTGCTAGTGTTTGGTTCATGGCTCTATTTATCTCC ATCATCTTGACCGGTGTGCTTGAGCTCCGGTGGAGTGGGGTTTTGATTGAAGACTGGTGGCGCAATGAGCAATTCTGGGT CATTGGAGGTGTTTCTGCTCATCTTTTTGCTGTGTTTCAAGGTCTCCTCAAAGTCCTTGCTGGAGTAGACACCAATTTCA CAGTCACAGCAAAAGCAGCAGAAGATGCTGAATTTGGAGAGCTCTATCTCTTCAAGTGGACCACTCTTCTCATCCCACCA ACCACTCTTATTATCTTGAACATTGTAGGAGTTGTTGCTGGAGTCTCTGATGCTATTAACAATGGTTATGGCTCATGGGG ACCTTTATTTGGGAAGCTATTTTTTGCCTTCTGGGTCATTGTTCATTTATATCCTTTCCTCAAAGGTCTCATGGGAAAGC AAAACAGGACTCCTACCATTGTGGTCCTGTGGTCAATCCTCTTGGCCTCAATTTTCTCATTGATTTGGGTCAGGATTGAT CCTTTCTTGCCCAAGCAAACTGGTCCAGTTCTCAAACAATGTGGGGTGGAATGCTGA
Protein sequence (LotjaGi6g1v0244300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLVILAFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWLPITRETYLDRLSIRFEREGEPNQLSPVDVYVS TVDPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDGASMLLFDSLAETAEFARRWVPFSKKYNIEPRAPEYYFSEKIDY LKDKVQPTFVKERRAMKREYEEFKVKINALVAKALKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELP RLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQLGKKLCYVQFPQRFDG IDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCFCCGGSRKSKSKKK SGRKGLFSGLYTKKKKMMGKDYVRKGSGTMFDLEEIEEGLEGYEELEKSTLMSQKNFEKRFGQSPVFIASTLVENGGLPE GTNTQSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLR WALGSIEIFLSRHCPLWYGYAGKLKYLERMAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFIS IILTGVLELRWSGVLIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAAEDAEFGELYLFKWTTLLIPP TTLIILNIVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRID PFLPKQTGPVLKQCGVEC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 20 | 20 | - | – | |
PANTHER | 1 | 816 | 816 | 0.0 | – | |
PANTHER | 1 | 816 | 816 | 0.0 | – | |
TMHMM | 21 | 40 | 20 | - | – | |
Phobius | 21 | 41 | 21 | - | – | |
Phobius | 42 | 595 | 554 | - | – | |
Pfam | 75 | 811 | 737 | 0.0 | ||
SUPERFAMILY | 88 | 620 | 533 | 3.09E-10 | ||
Coils | 173 | 193 | 21 | - | – | |
Gene3D | 181 | 366 | 186 | 7.9E-14 | ||
TMHMM | 595 | 617 | 23 | - | – | |
Phobius | 596 | 617 | 22 | - | – | |
Phobius | 618 | 628 | 11 | - | – | |
Phobius | 629 | 647 | 19 | - | – | |
TMHMM | 629 | 651 | 23 | - | – | |
Phobius | 648 | 666 | 19 | - | – | |
TMHMM | 666 | 688 | 23 | - | – | |
Phobius | 667 | 687 | 21 | - | – | |
Phobius | 688 | 707 | 20 | - | – | |
Phobius | 708 | 729 | 22 | - | – | |
TMHMM | 708 | 730 | 23 | - | – | |
Phobius | 730 | 748 | 19 | - | – | |
TMHMM | 745 | 767 | 23 | - | – | |
Phobius | 749 | 767 | 19 | - | – | |
Phobius | 768 | 778 | 11 | - | – | |
Phobius | 779 | 799 | 21 | - | – | |
TMHMM | 780 | 799 | 20 | - | – | |
Phobius | 800 | 818 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi6g1v0244300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…