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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0244700 |
| Transcript ID | LotjaGi6g1v0244700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cationic amino acid transporter; TAIR: AT2G34960.1 cationic amino acid transporter 5; Swiss-Prot: sp|O64759|CAAT5_ARATH Cationic amino acid transporter 5; TrEMBL-Plants: tr|V7AZ71|V7AZ71_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0244700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55732962..55735373) extracted from Lotus japonicus Gifu genome v1.2.
CCCAAACAATTTACAAACAAGAGGATCTTTTACAATAATTTTTCCGGCAAGGGACCTAAGTCAGACGGCGACACAAAGAC AGGGACTAATATAATGCTTAACCCTAGTATATATGAGGAAGTTTTTGTCCAAAAGTAAAATTTAGCACCATAATATCTAA ATAAGCATAGGCACCTCTTATTTGTAATGTGAGGATGTCCATCAATTGAATGCATTGACGAGTTGAAGAAGTGTTTAAAT TCCACACCAACTGACACAATAATTGAAGACACTTAGGAAGGGATTTCTATTTATTTCATAGCTATCTGCTTATTTTCCTC CATGACACCTTCCAATCTACACAAGAGCTTCAGGAAATACACAATCTATTGAATGGCTTTCAATAATGACCCTGAGCCAC AAAAAAGCTACTGGAGATGGAGCAAGCAAGATTTCTTACCAGAGGAATCCTTTCAGAGCTGGAACAACTACCTTCATGCT CTTTCACAAACATGGTTAAGGTTCAAGGATCGTCTCCAGAGCAGATCAGATGATGCAACTGAAACAGAAGAGCTCAGAAA ACAAAGTGAGCATGACATGAAAAGATGCCTCAACTGGTGGGACCTTATCTGGCTCGGGTTCGGTGCGGTGATTGGAGCAG GAATCTTTGTGCTCACTGGTCAAGAAGCTCATAACCATGCTGGACCAGCCATTGTCTTATCCTATGTTGCTTCTGGCATC TCAGCAATGCTTTCTGTCTTCTGCTACACAGAGTTTGCAGTGGAAGTTCCAGCTGCAGGAGGGTCATTTGCTTATCTGAG AATTGAGTTAGGAGATTTTGCTGCTTTCATAGCAGCTGGGAACATTCTTCTTGAAGGCGTTCTTGGAGGTGCAGCAGTGG CAAGATCATGGACATCTTACTTCACAACCCTTTTGAATCTTCCCAAGAATTCACTTAGGATCAAGACAAACCTCAAAGAT GGATACAACATGCTGGACCCTATAGCTTCTGTTGTTTTGTTAATTGCTGCAACAATTGCAGTGATCAGCACAAGAAAAAC CTCACTTCTCAATTGGATAGCATCTGCAATCAACACAGTGGTGATCATATTTGTGATCATTGCAGGGTTTGCTCATGCCA ATACCTCAAATTTGACACCTTTTTTACCTTATGAGGCTAAAGGGGTGTTCCAAGCTGCTGCAATTCTTTACTTTGCATAT GGAGGGTTTGACAGCATTGCAACCATGGCTGAGGAAACAAAAAATCCATCAAGGGACATACCTATTGGCCTTATTGGGTC AATGTCGATTATCACAGTGTTGTATTGCTTAATGGCACTCTCACTGAGCATGATGCAGAGGTACACAGAGATAGACACAG AAGCAGCTTTCTCAGTTGCATTTCAGCAAGTAGGAATGAAGTGGGCAAAATATGTTGTTGCTTTTGGTGCACTGAAGGGT ATGACAACAGTGCTTCTGGTAGGAAGATTAGGACAAGCGCGTTACATAACTCACATTGCACGTTCTCACATGATCCCTCC ATGGTTTGCTCTTGTTCACCCCAAGACAGGAACACCAATAAATGCTACACTCCTGATCACAGTTTTAAGTTCCTGCATAG CTTTCTTCACAGGCTTGGATGTGTTATCTAGCTTGTTATCAGTGAGCACACTCTTTATCTTCATGATGATATCTGTTGCT CTTCTGGTGAGGAGGTATTATGTGACAGGAGTCACACCAAGAGAGGACATGTTAAAGCTAGTTTTCTTCTTGATGATGAT TGTTGCTTCCTCAATGGGGATTTCAGCTTATTGGGGTTTGAGGCCTAATGGTTGGGTTGGATATGCAATTGCTGTTCCTG TTTGGTTCTTGGCAACTCTTGGGATGTCAGTGTTTTTGAAACAGCAAAGGCTGGCAAGAGTTTGGGGGGTTCCACTGGTG CCATGGCTCCCATCTTTGTCTATTGCAACAAATGTGTTTCTCATGGGATCTTTGAGTTATGATGCCTTTGTAAGATTTGG AGTGTGCACTTTGGTGATGTTGGTGTACTATGTTTTGTTTGGGCTACATTCAACTTATGATATGGCTCATCAACAAGAAA AGGTGCAAATGCAATCCATCAAAGTTAAGCACACAGAGACCATTGAGAATGCAAACCCTTAGATAAACTAAGTTTGTACT CTTTATTCATAAAAATCAGAATTCACTTTCCTCAGCCCCCTTCCCTATCTTGTATGAAACTCGCCATGTTATTAGTCCTT GTATCATGAACAAAATTAGTTAAATTGCAGTCATATTACTCAATAATAAACGGAAGAATTAATTTATCTATGGATGAATG TTTTCAATGGAACTTTTGTGTGTTTAAATAGGAGTTCAATAAAAGTGAGTGGACTATTACAAAGAAAAAAACCAACTGTA AAAGCTACCTCC
CDS sequence (LotjaGi6g1v0244700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCAATAATGACCCTGAGCCACAAAAAAGCTACTGGAGATGGAGCAAGCAAGATTTCTTACCAGAGGAATCCTT TCAGAGCTGGAACAACTACCTTCATGCTCTTTCACAAACATGGTTAAGGTTCAAGGATCGTCTCCAGAGCAGATCAGATG ATGCAACTGAAACAGAAGAGCTCAGAAAACAAAGTGAGCATGACATGAAAAGATGCCTCAACTGGTGGGACCTTATCTGG CTCGGGTTCGGTGCGGTGATTGGAGCAGGAATCTTTGTGCTCACTGGTCAAGAAGCTCATAACCATGCTGGACCAGCCAT TGTCTTATCCTATGTTGCTTCTGGCATCTCAGCAATGCTTTCTGTCTTCTGCTACACAGAGTTTGCAGTGGAAGTTCCAG CTGCAGGAGGGTCATTTGCTTATCTGAGAATTGAGTTAGGAGATTTTGCTGCTTTCATAGCAGCTGGGAACATTCTTCTT GAAGGCGTTCTTGGAGGTGCAGCAGTGGCAAGATCATGGACATCTTACTTCACAACCCTTTTGAATCTTCCCAAGAATTC ACTTAGGATCAAGACAAACCTCAAAGATGGATACAACATGCTGGACCCTATAGCTTCTGTTGTTTTGTTAATTGCTGCAA CAATTGCAGTGATCAGCACAAGAAAAACCTCACTTCTCAATTGGATAGCATCTGCAATCAACACAGTGGTGATCATATTT GTGATCATTGCAGGGTTTGCTCATGCCAATACCTCAAATTTGACACCTTTTTTACCTTATGAGGCTAAAGGGGTGTTCCA AGCTGCTGCAATTCTTTACTTTGCATATGGAGGGTTTGACAGCATTGCAACCATGGCTGAGGAAACAAAAAATCCATCAA GGGACATACCTATTGGCCTTATTGGGTCAATGTCGATTATCACAGTGTTGTATTGCTTAATGGCACTCTCACTGAGCATG ATGCAGAGGTACACAGAGATAGACACAGAAGCAGCTTTCTCAGTTGCATTTCAGCAAGTAGGAATGAAGTGGGCAAAATA TGTTGTTGCTTTTGGTGCACTGAAGGGTATGACAACAGTGCTTCTGGTAGGAAGATTAGGACAAGCGCGTTACATAACTC ACATTGCACGTTCTCACATGATCCCTCCATGGTTTGCTCTTGTTCACCCCAAGACAGGAACACCAATAAATGCTACACTC CTGATCACAGTTTTAAGTTCCTGCATAGCTTTCTTCACAGGCTTGGATGTGTTATCTAGCTTGTTATCAGTGAGCACACT CTTTATCTTCATGATGATATCTGTTGCTCTTCTGGTGAGGAGGTATTATGTGACAGGAGTCACACCAAGAGAGGACATGT TAAAGCTAGTTTTCTTCTTGATGATGATTGTTGCTTCCTCAATGGGGATTTCAGCTTATTGGGGTTTGAGGCCTAATGGT TGGGTTGGATATGCAATTGCTGTTCCTGTTTGGTTCTTGGCAACTCTTGGGATGTCAGTGTTTTTGAAACAGCAAAGGCT GGCAAGAGTTTGGGGGGTTCCACTGGTGCCATGGCTCCCATCTTTGTCTATTGCAACAAATGTGTTTCTCATGGGATCTT TGAGTTATGATGCCTTTGTAAGATTTGGAGTGTGCACTTTGGTGATGTTGGTGTACTATGTTTTGTTTGGGCTACATTCA ACTTATGATATGGCTCATCAACAAGAAAAGGTGCAAATGCAATCCATCAAAGTTAAGCACACAGAGACCATTGAGAATGC AAACCCTTAG
Protein sequence (LotjaGi6g1v0244700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFNNDPEPQKSYWRWSKQDFLPEESFQSWNNYLHALSQTWLRFKDRLQSRSDDATETEELRKQSEHDMKRCLNWWDLIW LGFGAVIGAGIFVLTGQEAHNHAGPAIVLSYVASGISAMLSVFCYTEFAVEVPAAGGSFAYLRIELGDFAAFIAAGNILL EGVLGGAAVARSWTSYFTTLLNLPKNSLRIKTNLKDGYNMLDPIASVVLLIAATIAVISTRKTSLLNWIASAINTVVIIF VIIAGFAHANTSNLTPFLPYEAKGVFQAAAILYFAYGGFDSIATMAEETKNPSRDIPIGLIGSMSIITVLYCLMALSLSM MQRYTEIDTEAAFSVAFQQVGMKWAKYVVAFGALKGMTTVLLVGRLGQARYITHIARSHMIPPWFALVHPKTGTPINATL LITVLSSCIAFFTGLDVLSSLLSVSTLFIFMMISVALLVRRYYVTGVTPREDMLKLVFFLMMIVASSMGISAYWGLRPNG WVGYAIAVPVWFLATLGMSVFLKQQRLARVWGVPLVPWLPSLSIATNVFLMGSLSYDAFVRFGVCTLVMLVYYVLFGLHS TYDMAHQQEKVQMQSIKVKHTETIENANP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 71 | 71 | - | – | |
| PANTHER | 7 | 572 | 566 | 0.0 | – | |
| PANTHER | 7 | 572 | 566 | 0.0 | – | |
| Gene3D | 67 | 505 | 439 | 7.5E-99 | – | |
| Phobius | 72 | 94 | 23 | - | – | |
| TMHMM | 72 | 94 | 23 | - | – | |
| Pfam | 73 | 444 | 372 | 3.7E-44 | ||
| Phobius | 95 | 105 | 11 | - | – | |
| Phobius | 106 | 128 | 23 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 129 | 148 | 20 | - | – | |
| Phobius | 149 | 170 | 22 | - | – | |
| TMHMM | 149 | 171 | 23 | - | – | |
| Phobius | 171 | 199 | 29 | - | – | |
| TMHMM | 198 | 220 | 23 | - | – | |
| Phobius | 200 | 218 | 19 | - | – | |
| Phobius | 219 | 224 | 6 | - | – | |
| Phobius | 225 | 246 | 22 | - | – | |
| TMHMM | 227 | 249 | 23 | - | – | |
| Phobius | 247 | 265 | 19 | - | – | |
| TMHMM | 264 | 283 | 20 | - | – | |
| Phobius | 266 | 286 | 21 | - | – | |
| Phobius | 287 | 297 | 11 | - | – | |
| TMHMM | 296 | 318 | 23 | - | – | |
| Phobius | 298 | 324 | 27 | - | – | |
| Phobius | 325 | 343 | 19 | - | – | |
| Phobius | 344 | 364 | 21 | - | – | |
| TMHMM | 347 | 369 | 23 | - | – | |
| Phobius | 365 | 395 | 31 | - | – | |
| TMHMM | 396 | 418 | 23 | - | – | |
| Phobius | 396 | 415 | 20 | - | – | |
| Phobius | 416 | 420 | 5 | - | – | |
| Phobius | 421 | 444 | 24 | - | – | |
| TMHMM | 422 | 444 | 23 | - | – | |
| Phobius | 445 | 455 | 11 | - | – | |
| TMHMM | 456 | 475 | 20 | - | – | |
| Phobius | 456 | 475 | 20 | - | – | |
| Phobius | 476 | 480 | 5 | - | – | |
| TMHMM | 480 | 502 | 23 | - | – | |
| Phobius | 481 | 502 | 22 | - | – | |
| Phobius | 503 | 513 | 11 | - | – | |
| TMHMM | 507 | 529 | 23 | - | – | |
| Pfam | 511 | 559 | 49 | 1.0E-16 | ||
| Phobius | 514 | 532 | 19 | - | – | |
| Phobius | 533 | 537 | 5 | - | – | |
| Phobius | 538 | 558 | 21 | - | – | |
| TMHMM | 539 | 558 | 20 | - | – | |
| Phobius | 559 | 589 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0244700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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