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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029485
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We have found 29 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.326s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0008099.1
n.a. PREDICTED: high affinity cationic amino acid transporter 1-like [Glycine max] gi|356529044|ref|XP_003533107.1| chr0 3245367 3248074 +
2 domain predictions
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Lj0g3v0106909.1
n.a. PREDICTED: low affinity cationic amino acid transporter 2-like [Glycine max] gi|356574163|ref|XP_003555221.1| chr0 46063370 46066513 +
2 domain predictions
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Lj0g3v0347439.1
n.a. PREDICTED: low affinity cationic amino acid transporter 2-like [Glycine max] gi|356525397|ref|XP_003531311.1| chr0 182313542 182319644 +
2 domain predictions
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Lj0g3v0347439.2
n.a. PREDICTED: low affinity cationic amino acid transporter 2-like [Glycine max] gi|356525397|ref|XP_003531311.1| chr0 182313542 182317379 +
2 domain predictions
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Lj0g3v0347449.1
n.a. n.a. chr0 182316070 182319977 -
2 domain predictions
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Lj1g3v0362060.1
n.a. PREDICTED: cationic amino acid transporter 8, vacuolar-like [Cicer arietinum] gi|502121564|ref|XP_004497371.1| chr1 4133899 4137575 -
2 domain predictions
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Lj1g3v1487390.1
n.a. PREDICTED: low affinity cationic amino acid transporter 2-like [Glycine max] gi|356514041|ref|XP_003525716.1| chr1 17828192 17845467 +
2 domain predictions
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Lj1g3v2940670.1
n.a. PREDICTED: cationic amino acid transporter 9, chloroplastic-like isoform X2 [Cicer arietinum] gi|502090017|ref|XP_004489094.1| chr1 33246056 33251258 +
2 domain predictions
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Lj1g3v2940670.2
n.a. PREDICTED: cationic amino acid transporter 9, chloroplastic-like isoform X2 [Cicer arietinum] gi|502090017|ref|XP_004489094.1| chr1 33246056 33266759 +
2 domain predictions
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Lj1g3v3979320.1
n.a. PREDICTED: cationic amino acid transporter 4, vacuolar-like [Cicer arietinum] gi|502107278|ref|XP_004493214.1| chr1 47268097 47275789 +
2 domain predictions
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Lj1g3v3979330.1
n.a. PREDICTED: cationic amino acid transporter 3-like [Glycine max] gi|356570337|ref|XP_003553346.1| chr1 47277799 47284667 +
2 domain predictions
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Lj4g3v1202280.2
n.a. PREDICTED: high affinity cationic amino acid transporter 1-like [Glycine max] gi|356513779|ref|XP_003525587.1| chr4 17827805 17832285 -
2 domain predictions
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Lj6g3v1392480.1
n.a. High affinity cationic amino acid transporter [Medicago truncatula] gi|357449157|ref|XP_003594855.1| chr6 16608305 16609470 -
2 domain predictions
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LotjaGi1g1v0177900.1
n.a. Cationic amino acid transporter; TAIR: AT1G17120.1 cationic amino acid transporter 8; Swiss-Prot: sp|Q9SHH0|CAAT8_ARATH Cationic amino acid transporter 8, vacuolar; TrEMBL-Plants: tr|I1KZY5|I1KZY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177900 LjG1.1_chr1 34094140 34096986 +
2 domain predictions
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LotjaGi1g1v0497000.1
n.a. Cationic amino acid transporter; TAIR: AT1G05940.1 cationic amino acid transporter 9; Swiss-Prot: sp|Q9C5D6|CAAT9_ARATH Cationic amino acid transporter 9, chloroplastic; TrEMBL-Plants: tr|I1L617|I1L617_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0497000 LjG1.1_chr1 101241280 101246842 +
2 domain predictions
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LotjaGi1g1v0497100.1
n.a. Cationic amino acid transporter; TAIR: AT1G05940.1 cationic amino acid transporter 9; Swiss-Prot: sp|Q9C5D6|CAAT9_ARATH Cationic amino acid transporter 9, chloroplastic; TrEMBL-Plants: tr|K7MUP2|K7MUP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0497100 LjG1.1_chr1 101248362 101267887 +
2 domain predictions
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LotjaGi1g1v0497100.2
n.a. Cationic amino acid transporter; TAIR: AT1G05940.1 cationic amino acid transporter 9; Swiss-Prot: sp|Q9C5D6|CAAT9_ARATH Cationic amino acid transporter 9, chloroplastic; TrEMBL-Plants: tr|K7MUP2|K7MUP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0497100 LjG1.1_chr1 101254259 101267791 +
2 domain predictions
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LotjaGi1g1v0497100.3
n.a. Cationic amino acid transporter; TAIR: AT1G05940.1 cationic amino acid transporter 9; Swiss-Prot: sp|Q9C5D6|CAAT9_ARATH Cationic amino acid transporter 9, chloroplastic; TrEMBL-Plants: tr|K7MUP2|K7MUP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0497100 LjG1.1_chr1 101254379 101260325 +
2 domain predictions
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LotjaGi1g1v0497100.4
n.a. Cationic amino acid transporter; TAIR: AT1G05940.1 cationic amino acid transporter 9; Swiss-Prot: sp|Q9C5D6|CAAT9_ARATH Cationic amino acid transporter 9, chloroplastic; TrEMBL-Plants: tr|K7MUP2|K7MUP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0497100 LjG1.1_chr1 101261216 101267791 +
2 domain predictions
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LotjaGi1g1v0647900.1
n.a. Cationic amino acid transporter, putative; TAIR: AT3G03720.1 cationic amino acid transporter 4; Swiss-Prot: sp|Q8W4K3|CAAT4_ARATH Cationic amino acid transporter 4, vacuolar; TrEMBL-Plants: tr|A0A0L9U7K6|A0A0L9U7K6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0647900 LjG1.1_chr1 120554273 120562539 +
2 domain predictions
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LotjaGi1g1v0648000.1
n.a. Cationic amino acid transporter, putative; TAIR: AT1G58030.1 cationic amino acid transporter 2; Swiss-Prot: sp|Q9ASS7|CAAT2_ARATH Cationic amino acid transporter 2, vacuolar; TrEMBL-Plants: tr|I1N8D4|I1N8D4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0648000 LjG1.1_chr1 120563999 120573819 +
2 domain predictions
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LotjaGi2g1v0061800.1
n.a. Cationic amino acid transporter; TAIR: AT4G21120.1 amino acid transporter 1; Swiss-Prot: sp|Q84MA5|CAAT1_ARATH Cationic amino acid transporter 1; TrEMBL-Plants: tr|A0A072VEU9|A0A072VEU9_MEDTR Cationic amino acid transporter; Found in the gene: LotjaGi2g1v0061800 LjG1.1_chr2 13516749 13522902 -
2 domain predictions
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LotjaGi2g1v0061800.2
n.a. Cationic amino acid transporter; TAIR: AT4G21120.1 amino acid transporter 1; Swiss-Prot: sp|Q84MA5|CAAT1_ARATH Cationic amino acid transporter 1; TrEMBL-Plants: tr|K7LDD5|K7LDD5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0061800 LjG1.1_chr2 13517793 13520471 -
2 domain predictions
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LotjaGi2g1v0111600.1
n.a. Cationic amino acid transporter, putative; TAIR: AT1G58030.1 cationic amino acid transporter 2; Swiss-Prot: sp|Q9ASS7|CAAT2_ARATH Cationic amino acid transporter 2, vacuolar; TrEMBL-Plants: tr|A0A151QYL2|A0A151QYL2_CAJCA High affinity cationic amino acid transporter 1; Found in the gene: LotjaGi2g1v0111600 LjG1.1_chr2 40151194 40169795 -
2 domain predictions
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LotjaGi4g1v0194400.1
n.a. Cationic amino acid transporter; TAIR: AT5G04770.1 cationic amino acid transporter 6; Swiss-Prot: sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic; TrEMBL-Plants: tr|A0A0S3R5M3|A0A0S3R5M3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0194400 LjG1.1_chr4 44742673 44749518 -
2 domain predictions
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LotjaGi4g1v0390300.1
n.a. Cationic amino acid transporter-like protein; TAIR: AT4G21120.1 amino acid transporter 1; Swiss-Prot: sp|Q84MA5|CAAT1_ARATH Cationic amino acid transporter 1; TrEMBL-Plants: tr|K7L6C1|K7L6C1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0390300 LjG1.1_chr4 76882873 76888518 -
2 domain predictions
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LotjaGi4g1v0390300.2
n.a. Cationic amino acid transporter-like protein; TAIR: AT4G21120.1 amino acid transporter 1; Swiss-Prot: sp|Q84MA5|CAAT1_ARATH Cationic amino acid transporter 1; TrEMBL-Plants: tr|K7L6C1|K7L6C1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0390300 LjG1.1_chr4 76884087 76888263 -
2 domain predictions
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LotjaGi5g1v0343200.1
n.a. Cationic amino acid transporter; TAIR: AT3G10600.1 cationic amino acid transporter 7; Swiss-Prot: sp|Q9SQZ0|CAAT7_ARATH Cationic amino acid transporter 7, chloroplastic; TrEMBL-Plants: tr|A0A151TQ23|A0A151TQ23_CAJCA High affinity cationic amino acid transporter 1; Found in the gene: LotjaGi5g1v0343200 LjG1.1_chr5 66047886 66052510 -
2 domain predictions
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LotjaGi6g1v0244700.1
n.a. Cationic amino acid transporter; TAIR: AT2G34960.1 cationic amino acid transporter 5; Swiss-Prot: sp|O64759|CAAT5_ARATH Cationic amino acid transporter 5; TrEMBL-Plants: tr|V7AZ71|V7AZ71_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0244700 LjG1.1_chr6 55732962 55735373 +
2 domain predictions
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