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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0246200 |
| Transcript ID | LotjaGi6g1v0246200.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan protein; TAIR: AT3G46550.1 Fasciclin-like arabinogalactan family protein; Swiss-Prot: sp|Q9SNC3|FLA4_ARATH Fasciclin-like arabinogalactan protein 4; TrEMBL-Plants: tr|A0A151S5T5|A0A151S5T5_CAJCA Fasciclin-like arabinogalactan protein 4; Found in the gene: LotjaGi6g1v0246200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55856470..55862224) extracted from Lotus japonicus Gifu genome v1.2.
TGAACATCCAAATCACATTGCGACTAACTCTCCTAGTAAAGTTTTTCTCATCCATAAAACTCGAACAGATATCTTATATA TATATATAGATAAAATAAAAAAGAAAAACAGTCCACATCATCATTGCATCACCAAGATGGCCATCTCATCATCATTGATT CACAGATCACACAGACACAGACACAGACACAGACTCATCCCAAAATCTCAACCCAATCACTTCACTTCACTCCACTCATC TCCTTCAATTCAATTCCAATTGAGTTGAGTTCAGATCCACCACCATTGAACTTCACTTCAACACCACCACCACACAATGC CTTCAACTCACTCTCCCATTTTCATTCCCCAAATTACCCTCATCGCTTTCCTCTATTTCCTAGTCCTATCCCCACGACCC TCCCTCTCATTCAACATCACCGCCCTCCTCTCCACCTTCCCGGAATTCTCCCAATTCACCGCCCTCATCGCCCCTCTCTC CGACGACCTCTCCCACCGCTCCTCCCTCTCCCTCCTCGCCGTCCCCAACTCCGTCCTCTCCTCCGACGACCGCCTCTCCC GCCACCAGCTCACCCCCTCCACCCTCCCCGACGTCCTCCGCTACCACGTCCTCCTACAATATCTCTCCTGGTCCGACCTC CGCTCCCTCCCCCCCTCCGGCAAGCTCATCACCACCCTCTACCAAACCACCGGCCGCGCCACCGGTAACCTCGGCTCCGT CAATCTCACCTGCGACCCCGTCACCGGCCTCGTCTCGATCCACCCCCCCACCCCATCCTCCTCCTCCTCCGCCGCCACAA ACGCCACCGTTCTCTCCCTCGTGAAAACCCTCCCTTACAACGTCACCATTTTCTCCGTCAATGCCCTCCTCATCCCCGGC GGCTTCGACCTCATGGCCTCCGAGACCGGGCCCACTTCCTTCATCAACATCACCAAAGCCCTCATCGACGGCCACAACTT CAACGTCGTCGCGTCCCTCCTCTCCGCCTCCGGCGTCGTGGAGGAGTTCGAGAGCGACGAGGGCGGCGCCGGGATCACGT TGTTCGTCCCCGTCGACGACGCCTTCGCCGATCTCCCTGCCTCCATCTCCCTCCAGTCACTCCCGGCGGACAAGAAGGCC GTCGTGCTCCGATTCCATGTCCTCCATTCGTATTACCCTCTCGGGTCGCTGCAATCCATCACGAATCCATCGCAGCCCAC GCTCGCCACCGAGGCCATGGGTGCTGGATTCTACACCCTCAACATCTCCGCCTTCAACGGCTCCCTTGCAATCAACTCCG GCATCGTTCAGGCCTCCGTCACTCAAACAGTTTTCGATGAGAAACCCGTTTCCATTTTCGGCATCTCCAGGGTCCTTCTA CCCAAAGAGATTTTCGGGAAGAATCCGATCGTGTCTTCCAGGACCGCGCCTCAGGACGGTGCTCCTCCACCCGAAGAGGA CGCGCATTCGCCGGAGACTTCACCGGGGTTGGATGGCAGCCCTTCACACCTTTCTTCGCCGCCGGGGCTCCGGGATGATG TGCTCTCAGAAGGTGTTGTTCATGGTTCGGAGTCATTTGTTGTTGTTGTTGTTCTATGCTGTATAGGATTGTATTTAGTG GTATAAGATAAATTCGTTTGATTTCTTCTTCTTAATTTTTTTTGTGGGGTTTTTGTTTTGATTTTCTCCACCTTTCGGTA CACTGTTAATTGCATTATTATTGGGTTGCAAAATGCAAATGCAGCCTTCTGTTTATTGCTTATTTATCATCTTCTTTACG AATTTGTTCTGGAATCTTCAATTTTCAATCCAATTATTGGTGTAATTAGTGTAATTATGGAGTTCAATGTTGATTCTCTG TTTTTCTTTTCTTTTCCTAGTGGCACCCTTGTATTTTGATATTCAATGCAGTCAATGATAGAGTTAATACTTTATAATTA GTTAATTGAGCTTTTGTCTTGTTTTAGACATGATTTTCATCTTGATCATCAGATGGTAAGTTTTGTTAATTGATATTATG AACCCGACGTTCTGTATTGTTATTATCATGTAATTAATGCCTGCCTGGTGCTGTGCAAGTGATCTCATGCTGATAGGGTG TGACTTGAGACTGGCTAGCCAAATTCATTTGGAGGAGGAGATTGTGCAGCTTGCTCGATACTGTTGTCATACCTATATGA GCATTGCCGCATCAGGTAGTTCCTTCTTTATTAAACTGTAATTGTGAATTTCATGAGCATTAACCTGTGCAAATCTGGAA ATAATGTTACACTGGGCAAGTTAAATTGAATATTTATTTGTAAGAACAGAGTAAGGTTTCTGAAAACAAATCTAGTATGT AGTTTCTTAAGAAAGGGATTTGTAGCTTTTCCCAGCAGAGTTTTAGAATTTCTGGTTGCAACTTTGTCTTAAATTGAGGA CTAGCTAGCTTGTAATGATAATGCCCTTATTCTTACATAGATATAGAAAAACTAATGGCGACGACACAGTGCTGGTTATC TGCGGATCTGAAAGTGGCCAAGGGGCATCTTGGTTGAGTATTTTGAGGAAATTAATTTATTGGTAGAACCGTAGAAGGTC TCTTTGCCTTCTATCTAATTCATGCTCTCTACGTTTGTCATAAACCTAAATTTTGGTGTCTTGTCTGCTCATGCTAAAGC TGAATATCCTACCACACTCACCTCTTAGACAGTTGGGATCACCACAGCCGCAAGCTTATGTGGCCTTTGGCTATTTCTCT TTGGAGTAAATACGTTCCAGTATCGGATTGATCATTTAATTGTATGTGGATTGGTTTCCACCAAATACATAAATTACGTT CCAGTATCTTGCATTCCTGCGATAGAAAGATTTAATGTCATTGATGCAAAACCAGGCTGCAACATCTCTTCTCCCTTTTA AAGTAAGTTTAGCTTCTTTAATTTCTGTGTGTATACTTTCTTATGTTTTGTGTTGACATGAAAGCCACATATGCTTATAG CTTATATGAACTTGATGCATTTAGATAGTAGTTTGGTCTAGATATAGGTCAGTTGTCCTAAGCAATTAAGCATTGTTCAA CTGATAAGGATGTTCTGCTCTTTGGGGGTTTTTATGATGATTGGAGGGATACATGTCTCTGTTTTATGTTCGATACATTA CTTTACTTATCTTTCAGTTCTCATGAAAAAATATCTTCTGTTCGTGTGAACAAACATAAGCATTTGGACGGATTCTACCT CTGATACTCTTTCCTCCTGAGTGCATTTCCCTGTTCTCCTTAGGATGTTAATTGAATGGCCACACCCCACAAGAACTTAA TGATGCATTGATGTAGTTTGCCGAATTTTAAGAAATTATTGACTGTGATGCAGCTATTCTTATTTTCTGAGATAGCATCT TGGACTCTTGGTAGCTTGATAGTACCAAGCGAGCTGGCATTGTCATTTCTGTGGATCAGGAATAGCACCTATGGTCAGGG TAAAGATACTGCTAGAGAAAAACTACACTGACCGGACTGAGAATTGAACCATGGTTCCTTTTTAAGAAATATGCACTAAA TAGAGGAATGAGGAACATAATGCTGACATAGAGCCACCAACATAGTGTCACCATTGAGAGCGGGGTTTGTAACTTGCAAG AGAGTGCAAAATCAAATACTTTTGAATAAATGTCACCCCATTATCTGTACCTCATGTATGGACATACATTCTTGAGTGTA ATGATTTATGACAATGTTTAGGGATGATACCTCGCATATTGAACTTGAATATGCAGTTAATATGTATATACCCTTATAAT AACTCCCCTAAATCTGTTGGAGTGGAGTGCATTTCCACTTTTTCTGAAGCCTATAAAAAACCAGCAAATCTAATTTGAGA ATGGAAGTTCCAATATTTTATTGAATTTCCAATCCCATTTCCTTGGACATTTTGTTTGAGAGCAGCCATTCATTTAAAAT ACAGTCATAATTGTACTGTTCATGACCAATAATATCTTGCTTGGTAGTTATGTCATCCGTTATATGGTCCTCTTCTAACG TCATTTAGTAGGTTTTGTTTTTGGATAGACATACTATGAGTAAACAGAGGGGGGTACAGCAGACATAAACAGTATAATTT CAGGCCACCATAGGATGTACTATGCACCCTCCTCTGCAAGTCTGCACGCTGCACAGTTTTCTTCCTTGTAATTAAAGAAG CATTAAGCACACATGGACTTGAAGGGTTTGTTTGGGGTTCTATGCAGTCTACTAGTCTCCTATTGAAACAGCCTATGTTT ATTGTTCTAAAATTAGATTCTTCTGGATTCGTTTTCTTTGTTTTTAACACATCCCAGTTGCTGGAAGTGATGAAAGTTAT TGTTGATATTCTGTTTTTTTTATTTCTTTTTAGCCTCAAGCAACATATTCCACTGGTCACAAAGCACACCCTGCTGCTAT AAATCTTGTGTTAGTTTTTTTGTAAATCCTGGTAATATAAAAGACTTACTGAGAGTTCTACCGAAAACATATCAGCCGGA AAAAAAAGGTTAGATTTAAAACTATCAAATGTACAATGAAGTTTGTCATTTGAATTTCTCCTCAAAAAAATCATATACTT GAAAAGTATATGTGAAAAAGGAGAAACTCAATACTCCCTGTATGATGTTACATTGTTGTCATATCAGTTCACTATGTTTC AGGACTAAACATCAACGTATACACGAACAACATCTACTATTTTAGCTCGACATATTGGGCATTTCCCACTGTTCCATTGC AACTCATTGGCACACTTCAGACACGTACACATGTGTCCACACCTGTGAAAAAGTTGGTAACAACATGAGTTCAGTTCTAC TGACTCTGCTATGATAATGGAAATAAAAATTTTCCAACAAGGTTTTTTCATTCAGAAGCATTTACCTGTATAAAACTGAG TCAACTTTCATATCGTAGCAAATGCAGCAGTTTCCTTTTTTAGGGGCCCTGTTATGAAACTTCTTTTCTTCTTTTTTAAC TGCAATAGTATTTTACACAAATAGAGAAGATAGTGAGCATCAAAATGTATCAATATGAGAATAGAAAAGTTTAATCTTCT AGAAATATTCAGCTTTAACACAGGTAAGGTTGATGAAATGAAACACAAACCTGTGAGAACCTCTTGGTTCATGGCTTGTT GTAATTGCATCTGCATATCCATGCAGCTTTGTATAGATTTCCTTAGCTCAGACATCTCACGGTAAAGTTGCTCCATATTG CTTCTCATATCATATATGAGCTCCATTTCCTGTAAGCACAACAGTTTTGTGTTTAATGAGAGATACATGAATCTGGCTTG GTACATAGAAGGTAATACTAAATGGAAGCTTTGAACTCACAATTGAATTATGATGGGAGGATGAAGAGTTCCGGCGACTA TCTCCATAAGACTGAGCTTGATAAGGTTGTGAGGATGTAGAAGCAACTCTATCAAAGTCATCGCTAGCTTCATGGTCTCT GAAACTCCATGCTAAGGAGGGATTAGAATAAACACCAACTTCATGCTCATGCTCATCCTCATCTTCTTTCTCCTCCTCCT CTTCTACTTCCTCTTCCATCCTCTCCTCCTCTTCATCCCCGCCTCTCTCTCTTCCTTCTTCTTGAGAAGGGCTGGCGGAA TGCATGCGTTCTTTTAAAAATGCTATCAACCCTTGATTGTCTTCCTCATCATCTTCACTATTGATTAAATGTGTTTGTGT TCCCCTATGAGATTGCATCAATCTATCCATTGTTTCCCGGAAATCACTTGTAAGGAAAGTTGACACTGTTCTTCT
CDS sequence (LotjaGi6g1v0246200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCAACTCACTCTCCCATTTTCATTCCCCAAATTACCCTCATCGCTTTCCTCTATTTCCTAGTCCTATCCCCACG ACCCTCCCTCTCATTCAACATCACCGCCCTCCTCTCCACCTTCCCGGAATTCTCCCAATTCACCGCCCTCATCGCCCCTC TCTCCGACGACCTCTCCCACCGCTCCTCCCTCTCCCTCCTCGCCGTCCCCAACTCCGTCCTCTCCTCCGACGACCGCCTC TCCCGCCACCAGCTCACCCCCTCCACCCTCCCCGACGTCCTCCGCTACCACGTCCTCCTACAATATCTCTCCTGGTCCGA CCTCCGCTCCCTCCCCCCCTCCGGCAAGCTCATCACCACCCTCTACCAAACCACCGGCCGCGCCACCGGTAACCTCGGCT CCGTCAATCTCACCTGCGACCCCGTCACCGGCCTCGTCTCGATCCACCCCCCCACCCCATCCTCCTCCTCCTCCGCCGCC ACAAACGCCACCGTTCTCTCCCTCGTGAAAACCCTCCCTTACAACGTCACCATTTTCTCCGTCAATGCCCTCCTCATCCC CGGCGGCTTCGACCTCATGGCCTCCGAGACCGGGCCCACTTCCTTCATCAACATCACCAAAGCCCTCATCGACGGCCACA ACTTCAACGTCGTCGCGTCCCTCCTCTCCGCCTCCGGCGTCGTGGAGGAGTTCGAGAGCGACGAGGGCGGCGCCGGGATC ACGTTGTTCGTCCCCGTCGACGACGCCTTCGCCGATCTCCCTGCCTCCATCTCCCTCCAGTCACTCCCGGCGGACAAGAA GGCCGTCGTGCTCCGATTCCATGTCCTCCATTCGTATTACCCTCTCGGGTCGCTGCAATCCATCACGAATCCATCGCAGC CCACGCTCGCCACCGAGGCCATGGGTGCTGGATTCTACACCCTCAACATCTCCGCCTTCAACGGCTCCCTTGCAATCAAC TCCGGCATCGTTCAGGCCTCCGTCACTCAAACAGTTTTCGATGAGAAACCCGTTTCCATTTTCGGCATCTCCAGGGTCCT TCTACCCAAAGAGATTTTCGGGAAGAATCCGATCGTGTCTTCCAGGACCGCGCCTCAGGACGGTGCTCCTCCACCCGAAG AGGACGCGCATTCGCCGGAGACTTCACCGGGGTTGGATGGCAGCCCTTCACACCTTTCTTCGCCGCCGGGGCTCCGGGAT GATGTGCTCTCAGAAGGTGTTGTTCATGGTTCGGAGTCATTTGTTGTTGTTGTTGTTCTATGCTGTATAGGATTGTATTT AGTGGTATAA
Protein sequence (LotjaGi6g1v0246200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSTHSPIFIPQITLIAFLYFLVLSPRPSLSFNITALLSTFPEFSQFTALIAPLSDDLSHRSSLSLLAVPNSVLSSDDRL SRHQLTPSTLPDVLRYHVLLQYLSWSDLRSLPPSGKLITTLYQTTGRATGNLGSVNLTCDPVTGLVSIHPPTPSSSSSAA TNATVLSLVKTLPYNVTIFSVNALLIPGGFDLMASETGPTSFINITKALIDGHNFNVVASLLSASGVVEEFESDEGGAGI TLFVPVDDAFADLPASISLQSLPADKKAVVLRFHVLHSYYPLGSLQSITNPSQPTLATEAMGAGFYTLNISAFNGSLAIN SGIVQASVTQTVFDEKPVSIFGISRVLLPKEIFGKNPIVSSRTAPQDGAPPPEEDAHSPETSPGLDGSPSHLSSPPGLRD DVLSEGVVHGSESFVVVVVLCCIGLYLVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 12 | 12 | - | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| PANTHER | 9 | 428 | 420 | 3.2E-168 | ||
| PANTHER | 9 | 428 | 420 | 3.2E-168 | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| Phobius | 25 | 31 | 7 | - | – | |
| SUPERFAMILY | 30 | 138 | 109 | 9.29E-11 | ||
| ProSiteProfiles | 31 | 172 | 142 | 10.566 | ||
| Phobius | 32 | 406 | 375 | - | – | |
| SMART | 66 | 188 | 123 | 2.0 | ||
| ProSiteProfiles | 202 | 347 | 146 | 15.501 | ||
| Gene3D | 204 | 352 | 149 | 3.1E-10 | ||
| SUPERFAMILY | 209 | 350 | 142 | 2.88E-21 | ||
| Pfam | 214 | 349 | 136 | 1.2E-16 | ||
| SMART | 241 | 350 | 110 | 1.3E-13 | ||
| MobiDBLite | 358 | 396 | 39 | - | – | |
| Phobius | 407 | 428 | 22 | - | – | |
| Phobius | 429 | 429 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0246200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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