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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0246300 |
| Transcript ID | LotjaGi6g1v0246300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT2G34920.2 RING/U-box superfamily protein; Swiss-Prot: sp|P29503|NEUR_DROME Protein neuralized; TrEMBL-Plants: tr|K7LBU8|K7LBU8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0246300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55852970..55857835) extracted from Lotus japonicus Gifu genome v1.2.
CATGGTTCATATCGGTTACCATGCAAGAGCTCCAAATTTAGGCAAAGAAAACGCTAATGAGGTAATGGTGATTTATTTAG CATTTATGCACCTTAAACTGCTCCTATGTTTTCGTCCAACAAACGATTGTTTCTCCTTCATCTTCTCCTCCTCTGTTTCA CATTGCTCTGTTTTTTTGTTTTCTTTCTATCTTTCTGTTTTTTTGAGGATGAGATGAGAGATTTTTCGTGAACAGTTTCA CGAGATGACAATGTCTTCAATCTCCCCACCACCCACTTCCCTGAAATGGGTTCCTATGCTTTCTGTTTCAGGTTTGCACA AACCCTCGTGAAGGATTGAACAATAGAACACCAACCAAGAAAGCCAGAAGAAAAAGAAGAACAGAACAACCAAAAATGGC TTCTTCCCAAGTTGAAATCGCTTCTTCTTCGCCTTTCGGTTGTGTTCTGAGGGACCGTAATCGCCGCGATGGATGCAGGG AATCCACCGGTTTCCAAAAAAACATCAAGAACTTTGTCATGGACCACCTCAACACATGCATCTCCACCATATCCTCTGAC TCTGCAACAAATGAGAATAAGGAACAGAATCAGATGAACAATGCTGCAGCTTCTTGGGTTTCAAAGCCTGCAAATAGCAA CAATCTTGCGAGGCTCCGTTTCAAGAGAAACAATCACAGCAACATCAACAACAGCAATGACAATAATGAATCTTCTTTGG CTTCCTTGATCAGCCCGAGACACTCTCGTCTTCTTGATCGATGGGCAGCGAAACAAGCTCGCCAGATGGTGTCGACGTTG GAGAACGAGGAGGCTGAGTTGTTAGCCATTGACAACAATAGCAACAACAACAACAGCATTCTTACAAGAACATCTAGTTC TAATTCTGATGAGTTTTCATCTGAATTTGCAAAGACAAAGCTTGGTGCATCTTCCCTGGTTCAGATATGGGAGAAGAGGC TGAACAAGTCCAGTGTATCCAAGCCCAACACACCAATTGAGAGGTCCAGTTCCAATTCTGCTACCAGCAGCATTGAAATT ACTTTCTCTGTGGCAGAGCAAAGCAGAGTGTTAGAAACAGGGGAAACAGGGGAATGTTGTGAACTGCCTTCAGGGAATGA GGAACCGTTCCCTGATTGGGAATCTGACAAGACAGGACAGAGTAGTGATCAATCCGTTTCGCCGCCACGAGGGAGGTGGA GTTCTTCTGAGAGCAGCGACAGGGTCAGTGTTGCAAACATCATAAAGAGGCTTCAAACACAGAATGATGACAATGATCAT GAAGGGTGTGGTGGTACTAGTAGTGTGGCAGATTCACCTTCCGCAGCAGAGAATTCAGAACAGAGAGTTTTTCCCCAGGT AACTTGTACCCCGAGAGTTAGAGGGCGCAAGGCGTTCGATGATTTGCTCATGAAGTTGGAGCAGGACAGGCATGGGGAGC TGAAGAACCTTTCAGAACGTGGAGCTGTCTCCAAGTTCACACAAAGAGGTCGCATTCAGGTAAAAAACTGAGGATTCTTC TTCCTCTACTTCTTCTTTTTGTTATGCTATGTTTGAGTTTCTTTAAAGAGTTTCCATTGAATTGAAACTCGTTTTCTTTG TGTCACACATTGCAGGCATCGCTTCGACTTAGATTGTTACAACGTGGGGTGGTAGTTAATGAGCCCTACCGCTTGAAATC AACAGCATCTGAAGTGAACAGACAACCAGCACAGGGATCTGCAATTATGCAACTAAGGTTTGATAATGAACTCTTTTATT ATAGAAAGATCTCTAATTGCCCTTTTGGTCTAGAAAGAATCACACTACATAAAGTGAAATTTAGACGTCTACCAGGAGAA CTTAGAAGATTATTATTGCACAGTTTGATCAAGCATTTCCTTCTATAAATTGTTACTTTTTTTTTTGAAGTTTGTTTCAT TAAGTGGCACTTTGCAAGGTACAAAATCTATATATATGTGTGTGTAGTGGTATTTGTTACATGATATGGTTATATGAGGA AGATTTTATTAGCCTATTAGGTAATCAATAGCCAATATAAAACCTTATGGTATCTTCATAGCAGGAACTATTATATTTAA TGCACTATTTCTATTATCTAGGAATGCCACTTTATGGAAAGCAGATGAATAAACTAATTCTGCTATTTTATACAAGCTTT TGACTCTTCTAGTGGTTATCATCCTTGTGGCACCTTCATTTAGGTTTCCATAACATGAAGACAGAAAGATTCATGACAAA TTCACAACTAAGTAATTGAGTAGGATACTAAATGCCAAATGTTTTTATAAATTGCAGGGAAAAATTTAGCAATGGAGCTG AACAGAGAAAAACAGTCCAAGCAGAAGTAGCAAGCCCAAAAAGTCCTCATAAGGAGATAGCAAACAAAACCACACAATTG GATAACTCTTCCAGTGTTGATCAAATCAACAAAGACAAAAGCAGCAAGACATCTCATGGCACTGCCAATCAATCTACAGA ATCCACACAAAAGTCAGTGTCTAAGACTAGCGAAGATCATAAGAGACAAGAAGCTCATCCAAGTTCAGATATCACACTCC AAGAAACACGTTTTGAGGCTCGGCATGATGTCAAGCAGGAAACTGCTGAGGCAACTACATCCAGGCCTGATTCAATTCCA GATGAGAGGACAGACAAGGCAGAAACCAGCAACCAACAGCATGCTATGAGCAAAAGCAGTTATGAAGAAACATTGGATGA GTTAGAAGCAAATCATAAGAGACAAGAAGCTCATCCAAGTTCAGATATCACACTCCAAGAAACACGTTTCGAGGCTCGGT ATGATGTCAAGCAGGAAACTGCTGAGGCAACTACATCCAGGCCTGATTCAATTCCAGATGAGAGGACAGACAAGGAAGAG ACCAGCAACCAACAGCATGCTATGAGCAAAAGCAGTTATGAAGAAACAGTGGATGAGGTAGAAGCAAGTAACCAGCAGCA TGCTGAAACCAGTCTTGACAATGCAGTAGAAGAGGACTATGCTGAAAGCAGTTATGAAGAGTTAGTGGAAGAGTTGGTCA TTGATCAGGATTATTGTGAAACTAATTATGATTGGATCAGTGAAATATCTCGGCCTAAGAGCTACTGGGAAGAACGTAGG CAAGCATGGTATAGAGAGATGCTTGACTCAGGTTCTCAAAAAGAGGATATAAGGAAGCTTCTTGAGAGGTATATAAGCAA AACCCTAATTTGTTTTCACCTAATCCTTTGTATATATCTATTAATGTTAACTAGAAGGCCTTTCAATAACATGAATGACT GGATGAACAAGTGAACAAGAAATTATATGACTTAGTGCATGTTTGAAAAGTCAGAATCAATTCTGATGGAAAACTTTTGT GAGTAGCTTCTAGGTGTGAGAATTGATTCTGAGGAAAATGATTCAAACATGCTATTAGAGGGTGAAAAGTCAATTTTGAA TATAATTTTATATTGGACGCTAAGTTACATGAGAGATCTGAAGTTAAATAACTTATTTGCAGAAGAACAGTGTCAACTTT CCTTACAAGTGATTTCCGGGAAACAATGGATAGATTGATGCAATCTCATAGGGGAACACAAACACATTTAATCAATAGTG AAGATGATGAGGAAGACAATCAAGGGTTGATAGCATTTTTAAAAGAACGCATGCATTCCGCCAGCCCTTCTCAAGAAGAA GGAAGAGAGAGAGGCGGGGATGAAGAGGAGGAGAGGATGGAAGAGGAAGTAGAAGAGGAGGAGGAGAAAGAAGATGAGGA TGAGCATGAGCATGAAGTTGGTGTTTATTCTAATCCCTCCTTAGCATGGAGTTTCAGAGACCATGAAGCTAGCGATGACT TTGATAGAGTTGCTTCTACATCCTCACAACCTTATCAAGCTCAGTCTTATGGAGATAGTCGCCGGAACTCTTCATCCTCC CATCATAATTCAATTGTGAGTTCAAAGCTTCCATTTAGTATTACCTTCTATGTACCAAGCCAGATTCATGTATCTCTCAT TAAACACAAAACTGTTGTGCTTACAGGAAATGGAGCTCATATATGATATGAGAAGCAATATGGAGCAACTTTACCGTGAG ATGTCTGAGCTAAGGAAATCTATACAAAGCTGCATGGATATGCAGATGCAATTACAACAAGCCATGAACCAAGAGGTTCT CACAGGTTTGTGTTTCATTTCATCAACCTTACCTGTGTTAAAGCTGAATATTTCTAGAAGATTAAACTTTTCTATTCTCA TATTGATACATTTTGATGCTCACTATCTTCTCTATTTGTGTAAAATACTATTGCAGTTAAAAAAGAAGAAAAGAAGTTTC ATAACAGGGCCCCTAAAAAAGGAAACTGCTGCATTTGCTACGATATGAAAGTTGACTCAGTTTTATACAGGTAAATGCTT CTGAATGAAAAAACCTTGTTGGAAAATTTTTATTTCCATTATCATAGCAGAGTCAGTAGAACTGAACTCATGTTGTTACC AACTTTTTCACAGGTGTGGACACATGTGTACGTGTCTGAAGTGTGCCAATGAGTTGCAATGGAACAGTGGGAAATGCCCA ATATGTCGAGCTAAAATAGTAGATGTTGTTCGTGTATACGTTGATGTTTAGTCCTGAAACATAGTGAACTGATATGACAA CAATGTAACATCATACAGGGAGTATTGAGTTTCTCCTTTTTCACATATACTTTTCAAGTATATGATTTTTTTGAGGAGAA ATTCAAATGACAAACTTCATTGTACATTTGATAGTTTTAAATCTAACCTTTTTTTTCCGGCTGATATGTTTTCGGTAGAA CTCTCAGTAAGTCTTTTATATTACCAGGATTTACAAAAAAACTAACACAAGATTTATAGCAGCAGG
CDS sequence (LotjaGi6g1v0246300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCATATCGGTTACCATGCAAGAGCTCCAAATTTAGGCAAAGAAAACGCTAATGAGGTTTGCACAAACCCTCGTGA AGGATTGAACAATAGAACACCAACCAAGAAAGCCAGAAGAAAAAGAAGAACAGAACAACCAAAAATGGCTTCTTCCCAAG TTGAAATCGCTTCTTCTTCGCCTTTCGGTTGTGTTCTGAGGGACCGTAATCGCCGCGATGGATGCAGGGAATCCACCGGT TTCCAAAAAAACATCAAGAACTTTGTCATGGACCACCTCAACACATGCATCTCCACCATATCCTCTGACTCTGCAACAAA TGAGAATAAGGAACAGAATCAGATGAACAATGCTGCAGCTTCTTGGGTTTCAAAGCCTGCAAATAGCAACAATCTTGCGA GGCTCCGTTTCAAGAGAAACAATCACAGCAACATCAACAACAGCAATGACAATAATGAATCTTCTTTGGCTTCCTTGATC AGCCCGAGACACTCTCGTCTTCTTGATCGATGGGCAGCGAAACAAGCTCGCCAGATGGTGTCGACGTTGGAGAACGAGGA GGCTGAGTTGTTAGCCATTGACAACAATAGCAACAACAACAACAGCATTCTTACAAGAACATCTAGTTCTAATTCTGATG AGTTTTCATCTGAATTTGCAAAGACAAAGCTTGGTGCATCTTCCCTGGTTCAGATATGGGAGAAGAGGCTGAACAAGTCC AGTGTATCCAAGCCCAACACACCAATTGAGAGGTCCAGTTCCAATTCTGCTACCAGCAGCATTGAAATTACTTTCTCTGT GGCAGAGCAAAGCAGAGTGTTAGAAACAGGGGAAACAGGGGAATGTTGTGAACTGCCTTCAGGGAATGAGGAACCGTTCC CTGATTGGGAATCTGACAAGACAGGACAGAGTAGTGATCAATCCGTTTCGCCGCCACGAGGGAGGTGGAGTTCTTCTGAG AGCAGCGACAGGGTCAGTGTTGCAAACATCATAAAGAGGCTTCAAACACAGAATGATGACAATGATCATGAAGGGTGTGG TGGTACTAGTAGTGTGGCAGATTCACCTTCCGCAGCAGAGAATTCAGAACAGAGAGTTTTTCCCCAGGTAACTTGTACCC CGAGAGTTAGAGGGCGCAAGGCGTTCGATGATTTGCTCATGAAGTTGGAGCAGGACAGGCATGGGGAGCTGAAGAACCTT TCAGAACGTGGAGCTGTCTCCAAGTTCACACAAAGAGGTCGCATTCAGGCATCGCTTCGACTTAGATTGTTACAACGTGG GGTGGTAGTTAATGAGCCCTACCGCTTGAAATCAACAGCATCTGAAGTGAACAGACAACCAGCACAGGGATCTGCAATTA TGCAACTAAGGGAAAAATTTAGCAATGGAGCTGAACAGAGAAAAACAGTCCAAGCAGAAGTAGCAAGCCCAAAAAGTCCT CATAAGGAGATAGCAAACAAAACCACACAATTGGATAACTCTTCCAGTGTTGATCAAATCAACAAAGACAAAAGCAGCAA GACATCTCATGGCACTGCCAATCAATCTACAGAATCCACACAAAAGTCAGTGTCTAAGACTAGCGAAGATCATAAGAGAC AAGAAGCTCATCCAAGTTCAGATATCACACTCCAAGAAACACGTTTTGAGGCTCGGCATGATGTCAAGCAGGAAACTGCT GAGGCAACTACATCCAGGCCTGATTCAATTCCAGATGAGAGGACAGACAAGGCAGAAACCAGCAACCAACAGCATGCTAT GAGCAAAAGCAGTTATGAAGAAACATTGGATGAGTTAGAAGCAAATCATAAGAGACAAGAAGCTCATCCAAGTTCAGATA TCACACTCCAAGAAACACGTTTCGAGGCTCGGTATGATGTCAAGCAGGAAACTGCTGAGGCAACTACATCCAGGCCTGAT TCAATTCCAGATGAGAGGACAGACAAGGAAGAGACCAGCAACCAACAGCATGCTATGAGCAAAAGCAGTTATGAAGAAAC AGTGGATGAGGTAGAAGCAAGTAACCAGCAGCATGCTGAAACCAGTCTTGACAATGCAGTAGAAGAGGACTATGCTGAAA GCAGTTATGAAGAGTTAGTGGAAGAGTTGGTCATTGATCAGGATTATTGTGAAACTAATTATGATTGGATCAGTGAAATA TCTCGGCCTAAGAGCTACTGGGAAGAACGTAGGCAAGCATGGTATAGAGAGATGCTTGACTCAGGTTCTCAAAAAGAGGA TATAAGGAAGCTTCTTGAGAGAAGAACAGTGTCAACTTTCCTTACAAGTGATTTCCGGGAAACAATGGATAGATTGATGC AATCTCATAGGGGAACACAAACACATTTAATCAATAGTGAAGATGATGAGGAAGACAATCAAGGGTTGATAGCATTTTTA AAAGAACGCATGCATTCCGCCAGCCCTTCTCAAGAAGAAGGAAGAGAGAGAGGCGGGGATGAAGAGGAGGAGAGGATGGA AGAGGAAGTAGAAGAGGAGGAGGAGAAAGAAGATGAGGATGAGCATGAGCATGAAGTTGGTGTTTATTCTAATCCCTCCT TAGCATGGAGTTTCAGAGACCATGAAGCTAGCGATGACTTTGATAGAGTTGCTTCTACATCCTCACAACCTTATCAAGCT CAGTCTTATGGAGATAGTCGCCGGAACTCTTCATCCTCCCATCATAATTCAATTGAAATGGAGCTCATATATGATATGAG AAGCAATATGGAGCAACTTTACCGTGAGATGTCTGAGCTAAGGAAATCTATACAAAGCTGCATGGATATGCAGATGCAAT TACAACAAGCCATGAACCAAGAGGTTCTCACAGTTAAAAAAGAAGAAAAGAAGTTTCATAACAGGGCCCCTAAAAAAGGA AACTGCTGCATTTGCTACGATATGAAAGTTGACTCAGTTTTATACAGGTGTGGACACATGTGTACGTGTCTGAAGTGTGC CAATGAGTTGCAATGGAACAGTGGGAAATGCCCAATATGTCGAGCTAAAATAGTAGATGTTGTTCGTGTATACGTTGATG TTTAG
Protein sequence (LotjaGi6g1v0246300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVHIGYHARAPNLGKENANEVCTNPREGLNNRTPTKKARRKRRTEQPKMASSQVEIASSSPFGCVLRDRNRRDGCRESTG FQKNIKNFVMDHLNTCISTISSDSATNENKEQNQMNNAAASWVSKPANSNNLARLRFKRNNHSNINNSNDNNESSLASLI SPRHSRLLDRWAAKQARQMVSTLENEEAELLAIDNNSNNNNSILTRTSSSNSDEFSSEFAKTKLGASSLVQIWEKRLNKS SVSKPNTPIERSSSNSATSSIEITFSVAEQSRVLETGETGECCELPSGNEEPFPDWESDKTGQSSDQSVSPPRGRWSSSE SSDRVSVANIIKRLQTQNDDNDHEGCGGTSSVADSPSAAENSEQRVFPQVTCTPRVRGRKAFDDLLMKLEQDRHGELKNL SERGAVSKFTQRGRIQASLRLRLLQRGVVVNEPYRLKSTASEVNRQPAQGSAIMQLREKFSNGAEQRKTVQAEVASPKSP HKEIANKTTQLDNSSSVDQINKDKSSKTSHGTANQSTESTQKSVSKTSEDHKRQEAHPSSDITLQETRFEARHDVKQETA EATTSRPDSIPDERTDKAETSNQQHAMSKSSYEETLDELEANHKRQEAHPSSDITLQETRFEARYDVKQETAEATTSRPD SIPDERTDKEETSNQQHAMSKSSYEETVDEVEASNQQHAETSLDNAVEEDYAESSYEELVEELVIDQDYCETNYDWISEI SRPKSYWEERRQAWYREMLDSGSQKEDIRKLLERRTVSTFLTSDFRETMDRLMQSHRGTQTHLINSEDDEEDNQGLIAFL KERMHSASPSQEEGRERGGDEEEERMEEEVEEEEEKEDEDEHEHEVGVYSNPSLAWSFRDHEASDDFDRVASTSSQPYQA QSYGDSRRNSSSSHHNSIEMELIYDMRSNMEQLYREMSELRKSIQSCMDMQMQLQQAMNQEVLTVKKEEKKFHNRAPKKG NCCICYDMKVDSVLYRCGHMCTCLKCANELQWNSGKCPICRAKIVDVVRVYVDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 16 | 57 | 42 | - | – | |
| MobiDBLite | 17 | 31 | 15 | - | – | |
| PANTHER | 49 | 598 | 550 | 1.4E-262 | – | |
| PANTHER | 49 | 598 | 550 | 1.4E-262 | – | |
| Coils | 173 | 193 | 21 | - | – | |
| MobiDBLite | 240 | 259 | 20 | - | – | |
| MobiDBLite | 277 | 365 | 89 | - | – | |
| MobiDBLite | 298 | 365 | 68 | - | – | |
| MobiDBLite | 464 | 595 | 132 | - | – | |
| MobiDBLite | 482 | 523 | 42 | - | – | |
| MobiDBLite | 524 | 539 | 16 | - | – | |
| MobiDBLite | 546 | 580 | 35 | - | – | |
| PANTHER | 549 | 1013 | 465 | 1.4E-262 | – | |
| PANTHER | 549 | 1013 | 465 | 1.4E-262 | – | |
| Coils | 582 | 609 | 28 | - | – | |
| MobiDBLite | 627 | 655 | 29 | - | – | |
| MobiDBLite | 627 | 694 | 68 | - | – | |
| MobiDBLite | 802 | 853 | 52 | - | – | |
| MobiDBLite | 806 | 821 | 16 | - | – | |
| Coils | 816 | 845 | 30 | - | – | |
| MobiDBLite | 822 | 841 | 20 | - | – | |
| MobiDBLite | 867 | 895 | 29 | - | – | |
| MobiDBLite | 869 | 895 | 27 | - | – | |
| Coils | 903 | 930 | 28 | - | – | |
| Gene3D | 935 | 1013 | 79 | 2.4E-15 | ||
| SUPERFAMILY | 946 | 1006 | 61 | 4.24E-8 | – | |
| Pfam | 959 | 1006 | 48 | 4.7E-12 | – | |
| CDD | 961 | 1001 | 41 | 7.11911E-21 | – | |
| SMART | 962 | 1000 | 39 | 0.0088 | ||
| ProSiteProfiles | 962 | 1001 | 40 | 11.029 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0246300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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