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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0247500 |
| Transcript ID | LotjaGi6g1v0247500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA small subunit methyltransferase NEP1; TAIR: AT3G57000.1 nucleolar essential protein-like protein; Swiss-Prot: sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1; TrEMBL-Plants: tr|I3TAC5|I3TAC5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0247500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55970327..55974403) extracted from Lotus japonicus Gifu genome v1.2.
TTTAATTTGTCTTTTACAATAAAGTCCTTTAATGATTTTGTCCCTAAACCTTCTCAGACCACCTCTTCACCAGCAAACTC CCACCTCCAGCACCTCACGCGTGACCTCTGTCTCCGGCCATCAGATCCGGTTCACTTTGACTCCAACCGACACCTCTGAA TGATATCGTCGCCATGGAGGTCCAATCTCGGTTTCTCTCTCAACCACTTCACTGACGAACTGCCGCCATCTTCGGCAAAC CTGTGAGGGAAGAGGGAGAGACGGAGGTCCACACAGCACGACCGACATGACCCATACCCAATAGATCTTGACTCCCAGAC CTGTTGGAATATTTGATATTTCAGACCCAACAAATCTTATGTGTTTTGAGGGTGGCGGAATCCGTGAAATTTTATCAAAT AAAGGTTGAGCCTCTGACTTGCAACAGAACATTTGGGAGCTGATCGGAGAGGGTGGTTCGAAGGTGCGTTGGGCTCCGGC GGCATGGTGGGGTGAGAGGGGTAGAGATTGGAAAGGGTTATTTTTGTAAACTTCTTTCTTATTTTATTTTTCAATTTTTT TACAGCAGGTATGCAAACCTATTATAGTAGGTAATTTCCCCTCTTTAATGGTGCAAGACCCACTCTGTACTTGCACCCCC TATTTTATTTTTATTTTATTTTATTATTGAAAAAGACAAAATCTGACTAGTGTAATTTTGAATAAAATAAAATAATTGTG TCGTGTGGCCCAGTGGGTTTATGTGGTTGAGGGTTTATAATTGTGTTTTTGTGGTTTCCAGAGGTTGTCTTCCATCCGCC GCCGTAACCGCAGTCTCCGTCGTTTTCTTCTCTTCCTCTTCGTCGGAGGTATGATATCTATCTTCCCCTGTTCTCATTGA TTTGGTTTGCTTTATTGCTGCTTAGGGAGAGGGATTTTATTGTTTGAATTGCTGTTGCAAGTTGCTTTCTCATTTGTTTT TGTGTGGGAAAATCTCATTTGTAGTATTTCTCTTCATCAACCTTGTTCAAGTTTAATACAGTTCAGAACAACTATTTCTA CAACTCATTTATTTTTGTACTTGAAATTTCAATTTCAATTTTAAACAATAAATATATTATACAGCTTTAATTTGATAGGA ATTTCATTTTTAAACAAAGTTATATTACATAAATATTTATTTTTTGTTTAGATTAAAGCCCACCAATTAACCTAGCACAA CTGAACCCTAAGACAAGACAACTATTGTGTTCAGTTGTGGTTGAGGGAAGCCATGACACGACCTTTTGGTATGAAGGGGC GGAAGAGAAAGGACAAGGAAGCTAAATATGATCGCGAAGAAGATGAAGACGAACAAGTGCAACCTAAGAGACCTATGCTC CAAAATGCTGAAGTAGCTGCAGCAAATGAGGAGGATGAACTTGTAGGTATCCCAATTATGCCTAGTGACCACAAGAGTGA CAACCCTAATGTCATATTCATTCTTGAAAGGGCTTCTTTGGAAGTCGCCAAGGTTGGCAAGGTAATTTCCTCCTAATCTT CAATTTGGTGATTTCATTTGTGCTTCCTTCCTATTATATTACACAAAAAATGTTGAAGCTTTGTTATTATGAGTTATGGC TTTGTTCATTGCATTCTTAAGATTTTTTTTCTTTGCTGAGTGCTGGCTGACCGCCTTTGATTGCTGTTGAATTTGCAGAC TTATCAGCTTTTGAACTCGGATGACCATGCCAATTTCCTCCGCAAAAATAACAAGAATCCTGGTGATTATAGGCCTGACA TTACTCATCAGGTTGGTCCAACTTGCTAAAATGGACATGTTTTGGTCTTCATCATCATCCCTCTCAAATCTAATTTTCTT TTTAATAAAAAACTCATCATTCGTATTACTTCTTCTTTCCATTATTGAGTTTAAGGTTATGCTGCTTGGTTGGTGTTATA AAAGTTGGGCTCAAAAATACAATATACTCAAAATTTATTGTGTGCCCTAAATCTAAGTACATTGTCATGTACTCATGTTT ATTGGAGTAGTTTATTTGGTTTAGCTCCACTGAGTGTGAACTAAGAGATTTACTTTGGAGAAGAAAAGGAGTTTAGCCAT GAATTGAAGTTGGTTAATTTAGCTTTATAATTGTTTTGTGTGTACATGCATATGATTTTCCAATACATGGTTATAATTCT TCACTCTTCGTTCTAGAGTAAATCCCCAGAGGAGCTAAATTTGCTTTCCCCCCTTTCAACTACAGTAATAGTCTTGAATT CTTTTTTTTTTTGCAATTTAAAATCCCATTTTATAATTTTCACGAACCATTTTATATTATATTTCTCACGCACCCTCACA CAAGAGCCATTTGGGCTTGAGCGTGGACATTGCACAACCACACTTCATGCTAAAATTGAACTTTTTATTAGAAGAATTGA GTCAACGAGGATCGAACTCGGTTACAGACATGTTAGGCGACAACTATCTTCGAAGCTTAAGTGGTGGGATTAAGACTTAA ATGGTTTTATATTATGTTTTTAACAATATCCAATGATATTTTCAGGCCCTTCTATCTATTTTAGATAGCCCACTAAATAA AGCTGGGAGGTTGCAGGCAGTATACATAAAGACTGAAAAAGGTGTTCTTATAGAGGTTAAGCCCTATGTTCGTATTCCAA GAACATTCAAACGGTTCTCTGGTGTCATGTGTAAGTTTTAGTTAGCTGTTTGATTTCCTAGGCTTTAAGCACTATTACCT CATGTGCGCCTGCCTACTTCCTTCAACCTCTCATTTGTTGCTCCTAAACTTTACCCTGCAGTACAACTGCTTCAAAAATT GAGCATATCTGCTGCTGGCAAGCATGAGAAACTTCTCCGCACAATAAAAAACCCTGTGACTCAGTATCTGCCTGTCAACT CACGAAAAATAGGTGAGTTTTTTTTTTCTAATGTTTTGAAAATGATTTCATGGTTACATGATTCTTTTAAAGTTTGTTAC AAGGATCTGTGAATCTTGATGGTCACTTATGTGTTTCAGTTCATGATAAATTCTTTTATAAAAATATTACTAAGAGAAGA AGTAATTGCTCTCCTTGGTTGTTAGGTCTTTCATTCAGTTCAGAAAAGCTCGTAAATATGAATGACTACGTATCAACTGT TCCAAGCGATATGAACCTTGTCTTTGTGGTATTCTCACAAGTTCCCAACTTTCAAATTATATTATTGTTATCTCGGTACA TGTTTAACTTTTGGTAATCTAATTTAAGGTAGGAGCAATGGCCCATGGGAAGGTTGAGACGGATTACACAGAGGACTATA TAGCAGGTAGAGTTTATCCATATACACTTTCGCCTTAAATTTTGTTGTGAATTCTAAATACATTTTACGTTAATGGTAAA ACTACCTCAGATAATTACTTCAACCGTCAGTATATTTTAGTTTCTTACTTCGTTGTTTTTCCTGATGCAGTTTCTGGGTA CCCTCTAAGTGCTGCTTACTGTATTACAAGGATTTGCAACGCCCTTGAGGCAAAGTGGAAGATATTGTGATTTAGATTCT TCAGTTCATGCCTGAGATACATTTTTCTAGTTTCAGCAGTATATTCATGTAATAACAGGGATAGGCAGGCGGCCTAGCAG TGATGTGGGAAATCAATTTCAAGATTAGTTAACTGTGAGGTTTTTTGAGGGCATGCTTGATATATTGGACCAGAATGGTG CTTTTAAAGTTTATTGATTGTCAATGCTGTATTTGAATTAATCATACCTTCCACCTTGATACATTACAAGGGGATATGCT GAACAGGGTTTAATCTGTATTATGTTCACTGAACTAATACACGGTTCTAGATATTTGATGGGATTGATGTTGAAATAATT TATTTTAAAATCATTTAGGTTGAAAAATTGATTTGTATTTTAAAATGTTATCTTAAATTTCAAAGTATTGGTCCAATGCA ATATTTACTATTTTTGAATCATTAACCAAAGTTTTTAGTATTATTTATGTTATCTAAAGGATGACTTTTTTAGTCGATCC AACTAAAAATATCAAGACAGAAAGAATGTTTTAATTTATTTAAGACAATTACATTCATGTTCAAGCTACCAAGTCAT
CDS sequence (LotjaGi6g1v0247500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACACGACCTTTTGGTATGAAGGGGCGGAAGAGAAAGGACAAGGAAGCTAAATATGATCGCGAAGAAGATGAAGACGA ACAAGTGCAACCTAAGAGACCTATGCTCCAAAATGCTGAAGTAGCTGCAGCAAATGAGGAGGATGAACTTGTAGGTATCC CAATTATGCCTAGTGACCACAAGAGTGACAACCCTAATGTCATATTCATTCTTGAAAGGGCTTCTTTGGAAGTCGCCAAG GTTGGCAAGACTTATCAGCTTTTGAACTCGGATGACCATGCCAATTTCCTCCGCAAAAATAACAAGAATCCTGGTGATTA TAGGCCTGACATTACTCATCAGGCCCTTCTATCTATTTTAGATAGCCCACTAAATAAAGCTGGGAGGTTGCAGGCAGTAT ACATAAAGACTGAAAAAGGTGTTCTTATAGAGGTTAAGCCCTATGTTCGTATTCCAAGAACATTCAAACGGTTCTCTGGT GTCATGTTACAACTGCTTCAAAAATTGAGCATATCTGCTGCTGGCAAGCATGAGAAACTTCTCCGCACAATAAAAAACCC TGTGACTCAGTATCTGCCTGTCAACTCACGAAAAATAGGTCTTTCATTCAGTTCAGAAAAGCTCGTAAATATGAATGACT ACGTATCAACTGTTCCAAGCGATATGAACCTTGTCTTTGTGGTAGGAGCAATGGCCCATGGGAAGGTTGAGACGGATTAC ACAGAGGACTATATAGCAGTTTCTGGGTACCCTCTAAGTGCTGCTTACTGTATTACAAGGATTTGCAACGCCCTTGAGGC AAAGTGGAAGATATTGTGA
Protein sequence (LotjaGi6g1v0247500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRPFGMKGRKRKDKEAKYDREEDEDEQVQPKRPMLQNAEVAAANEEDELVGIPIMPSDHKSDNPNVIFILERASLEVAK VGKTYQLLNSDDHANFLRKNNKNPGDYRPDITHQALLSILDSPLNKAGRLQAVYIKTEKGVLIEVKPYVRIPRTFKRFSG VMLQLLQKLSISAAGKHEKLLRTIKNPVTQYLPVNSRKIGLSFSSEKLVNMNDYVSTVPSDMNLVFVVGAMAHGKVETDY TEDYIAVSGYPLSAAYCITRICNALEAKWKIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 36 | 36 | - | – | |
| MobiDBLite | 7 | 31 | 25 | - | – | |
| PANTHER | 53 | 270 | 218 | 6.7E-109 | ||
| SUPERFAMILY | 56 | 271 | 216 | 1.27E-76 | ||
| CDD | 67 | 266 | 200 | 9.72681E-111 | – | |
| Gene3D | 67 | 272 | 206 | 1.3E-87 | ||
| Pfam | 70 | 266 | 197 | 1.8E-75 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi6g1v0247500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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