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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029028
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 34 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.269s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0059639.1
n.a. PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like isoform X2 [Cicer arietinum] gi|502124098|ref|XP_004498384.1| chr0 19765061 19768545 +
2 domain predictions
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Lj0g3v0181439.1
n.a. AGAMOUS-like 26 isoform 1 [Theobroma cacao] gi|508704835|gb|EOX96731.1| chr0 88507273 88510920 +
2 domain predictions
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Lj0g3v0181439.2
n.a. AGAMOUS-like 26 isoform 3 [Theobroma cacao] gi|508704837|gb|EOX96733.1| chr0 88509602 88510920 +
2 domain predictions
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Lj0g3v0185779.1
n.a. PREDICTED: tRNA (guanosine(18)-2'-O)-methyltransferase-like [Cicer arietinum] gi|502101733|ref|XP_004491861.1| chr0 90528603 90531384 -
2 domain predictions
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Lj0g3v0191559.1
n.a. Methyltransferases isoform 1 [Theobroma cacao] gi|508781919|gb|EOY29175.1| chr0 93610607 93615529 -
2 domain predictions
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Lj0g3v0191559.2
n.a. Methyltransferases isoform 1 [Theobroma cacao] gi|508781919|gb|EOY29175.1| chr0 93610607 93615820 -
2 domain predictions
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Lj0g3v0266349.1
n.a. RNA methyltransferase-like protein [Medicago truncatula] gi|357517191|ref|XP_003628884.1| chr0 137899960 137908356 -
2 domain predictions
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Lj0g3v0266349.2
n.a. RNA methyltransferase-like protein [Medicago truncatula] gi|357517191|ref|XP_003628884.1| chr0 137899960 137908689 -
2 domain predictions
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Lj0g3v0266349.3
n.a. RNA methyltransferase-like protein [Medicago truncatula] gi|357517191|ref|XP_003628884.1| chr0 137899960 137908322 -
2 domain predictions
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Lj0g3v0266349.4
n.a. RNA methyltransferase-like protein [Medicago truncatula] gi|357517191|ref|XP_003628884.1| chr0 137902512 137908689 -
2 domain predictions
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Lj1g3v0318000.2
n.a. PREDICTED: ribosomal RNA small subunit methyltransferase E-like [Cicer arietinum] gi|502120160|ref|XP_004496867.1| chr1 3598316 3600641 +
2 domain predictions
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Lj1g3v2994560.1
n.a. tRNA guanosine-2'-O-methyltransferase [Medicago truncatula] gi|357502123|ref|XP_003621350.1| chr1 34085002 34087819 +
2 domain predictions
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Lj1g3v2994560.2
n.a. tRNA guanosine-2'-O-methyltransferase [Medicago truncatula] gi|357502123|ref|XP_003621350.1| chr1 34085002 34087819 +
2 domain predictions
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Lj2g3v1457490.1
n.a. TRNA/rRNA methyltransferase family protein isoform 2 [Theobroma cacao] gi|508776922|gb|EOY24178.1| chr2 23045228 23048336 -
2 domain predictions
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Lj4g3v1212310.2
n.a. TRNA/rRNA methyltransferase family protein isoform 1 [Theobroma cacao] gi|508776921|gb|EOY24177.1| chr4 17893548 17900273 +
2 domain predictions
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Lj4g3v2375050.1
n.a. PREDICTED: 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB-like [Cicer arietinum] gi|502151214|ref|XP_004508331.1| chr4 32854957 32858374 -
2 domain predictions
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Lj4g3v3043940.1
n.a. TRNA/rRNA methyltransferase family protein [Theobroma cacao] gi|508783395|gb|EOY30651.1| chr4 40665755 40668007 +
2 domain predictions
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Lj5g3v2058560.1
n.a. OB-fold-like isoform 1 [Theobroma cacao] gi|508713706|gb|EOY05603.1| chr5 29718991 29722625 -
2 domain predictions
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Lj6g3v1422200.1
n.a. PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like isoform X2 [Cicer arietinum] gi|502124098|ref|XP_004498384.1| chr6 16898486 16901925 -
2 domain predictions
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LotjaGi1g1v0174700.1
n.a. Ribosomal RNA small subunit methyltransferase E; TAIR: AT1G50000.1 methyltransferase; Swiss-Prot: sp|O66552|RSME_AQUAE Ribosomal RNA small subunit methyltransferase E; TrEMBL-Plants: tr|A0A0S3SM93|A0A0S3SM93_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0174700 LjG1.1_chr1 33491788 33495154 +
2 domain predictions
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LotjaGi1g1v0174700.2
n.a. Ribosomal RNA small subunit methyltransferase E; TAIR: AT1G50000.1 methyltransferase; Swiss-Prot: sp|O66552|RSME_AQUAE Ribosomal RNA small subunit methyltransferase E; TrEMBL-Plants: tr|A0A072VQR6|A0A072VQR6_MEDTR Ribosomal RNA small subunit methyltransferase E; Found in the gene: LotjaGi1g1v0174700 LjG1.1_chr1 33491799 33495554 +
2 domain predictions
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LotjaGi1g1v0275200.1
n.a. Ribosomal RNA small subunit methyltransferase NEP1; TAIR: AT3G57000.1 nucleolar essential protein-like protein; Swiss-Prot: sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1; TrEMBL-Plants: tr|I3TAC5|I3TAC5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0275200 LjG1.1_chr1 67389809 67404157 +
2 domain predictions
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LotjaGi1g1v0508500.1
n.a. tRNA guanosine-2'-O-methyltransferase; TAIR: AT5G15390.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|O67577|TRMH_AQUAE tRNA (guanosine(18)-2'-O)-methyltransferase; TrEMBL-Plants: tr|G7L451|G7L451_MEDTR tRNA/rRNA methyltransferase SpoU family protein; Found in the gene: LotjaGi1g1v0508500 LjG1.1_chr1 102703607 102708081 +
2 domain predictions
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LotjaGi1g1v0508500.2
n.a. tRNA guanosine-2'-O-methyltransferase; TAIR: AT5G15390.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|O67577|TRMH_AQUAE tRNA (guanosine(18)-2'-O)-methyltransferase; TrEMBL-Plants: tr|G7L451|G7L451_MEDTR tRNA/rRNA methyltransferase SpoU family protein; Found in the gene: LotjaGi1g1v0508500 LjG1.1_chr1 102703680 102708047 +
2 domain predictions
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LotjaGi4g1v0173100.1
n.a. rRNA methyltransferase; TAIR: AT4G38020.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|P94538|YSGA_BACSU Uncharacterized tRNA/rRNA methyltransferase YsgA; TrEMBL-Plants: tr|G7LIJ4|G7LIJ4_MEDTR tRNA/rRNA methyltransferase SpoU family protein; Found in the gene: LotjaGi4g1v0173100 LjG1.1_chr4 34629290 34638021 +
2 domain predictions
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LotjaGi4g1v0195000.1
n.a. tRNA/rRNA methyltransferase family protein; TAIR: AT4G17610.2 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|Q13395|TARB1_HUMAN Probable methyltransferase TARBP1; TrEMBL-Plants: tr|A0A0R0FD66|A0A0R0FD66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0195000 LjG1.1_chr4 44858539 44890296 +
2 domain predictions
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LotjaGi4g1v0348400.1
n.a. tRNA guanosine-2'-O-methyltransferase; TAIR: AT4G15520.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|Q6FF50|RLMB_ACIAD 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; TrEMBL-Plants: tr|K7MJI7|K7MJI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0348400 LjG1.1_chr4 72727636 72731652 -
2 domain predictions
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LotjaGi4g1v0445300.1
n.a. rRNA methyltransferase; TAIR: AT2G19870.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|O94631|MRM1_SCHPO rRNA methyltransferase 1, mitochondrial; TrEMBL-Plants: tr|I1KPW8|I1KPW8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0445300 LjG1.1_chr4 81801134 81804560 +
2 domain predictions
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LotjaGi5g1v0064600.2
n.a. Ribosomal RNA large subunit methyltransferase H; TAIR: AT5G10620.1 methyltransferase; Swiss-Prot: sp|Q9LXB4|Y5620_ARATH Putative RNA methyltransferase At5g10620; TrEMBL-Plants: tr|I3SEK8|I3SEK8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0064600 LjG1.1_chr5 10832129 10837553 -
2 domain predictions
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LotjaGi5g1v0261900.1
n.a. tRNA (cytidine(34)-2'-O)-methyltransferase; TAIR: AT5G26880.1 tRNA (cytidine(34)-2'-O)-methyltransferase; Swiss-Prot: sp|P74516|TRML_SYNY3 Putative tRNA (cytidine(34)-2'-O)-methyltransferase; TrEMBL-Plants: tr|I3S4V5|I3S4V5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0261900 LjG1.1_chr5 57071811 57075687 -
2 domain predictions
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LotjaGi5g1v0316800.1
n.a. OB-fold-like, putative isoform 2; TAIR: AT5G19300.1 methyltransferase C9orf114 protein; Swiss-Prot: sp|Q5T280|CI114_HUMAN Putative methyltransferase C9orf114; TrEMBL-Plants: tr|I1NGB5|I1NGB5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316800 LjG1.1_chr5 63462978 63469640 -
2 domain predictions
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LotjaGi5g1v0316800.2
n.a. OB-fold-like, putative isoform 2; TAIR: AT5G19300.1 methyltransferase C9orf114 protein; Swiss-Prot: sp|Q5T280|CI114_HUMAN Putative methyltransferase C9orf114; TrEMBL-Plants: tr|I1NGB5|I1NGB5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316800 LjG1.1_chr5 63463260 63469640 -
2 domain predictions
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LotjaGi6g1v0247500.1
n.a. Ribosomal RNA small subunit methyltransferase NEP1; TAIR: AT3G57000.1 nucleolar essential protein-like protein; Swiss-Prot: sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1; TrEMBL-Plants: tr|I3TAC5|I3TAC5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0247500 LjG1.1_chr6 55970327 55974403 -
2 domain predictions
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LotjaGi6g1v0247500.2
n.a. Ribosomal RNA small subunit methyltransferase NEP1; TAIR: AT3G57000.1 nucleolar essential protein-like protein; Swiss-Prot: sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1; TrEMBL-Plants: tr|I3TAC5|I3TAC5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0247500 LjG1.1_chr6 55970466 55974437 -
2 domain predictions
 –