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IPR029028

Source: InterPro

Description

IPR029028 is a Alpha/beta knot methyltransferases.

<p>This entry represents a α/β knot structural domain that can be found in many RNA methyltransferases, including members from the SPOUT superfamily, EMG1/NEP1 methyltransferases and SAM-dependent RNA methyltransferases. The α/β knot structure is extremely rare in protein structures as it poses a folding problem [[cite:PUB00026291]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 34

Transcript Name Description Predicted domains Domain count
Lj0g3v0059639.1
– PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like isoform X2 [Cicer arietinum] gi|502124098|ref|XP_004498384.1|
Domains
7
Lj0g3v0181439.1
– AGAMOUS-like 26 isoform 1 [Theobroma cacao] gi|508704835|gb|EOX96731.1|
Domains
10
Lj0g3v0181439.2
– AGAMOUS-like 26 isoform 3 [Theobroma cacao] gi|508704837|gb|EOX96733.1|
Domains
6
Lj0g3v0185779.1
– PREDICTED: tRNA (guanosine(18)-2'-O)-methyltransferase-like [Cicer arietinum] gi|502101733|ref|XP_004491861.1|
Domains
13
Lj0g3v0191559.1
– Methyltransferases isoform 1 [Theobroma cacao] gi|508781919|gb|EOY29175.1|
Domains
9
Lj0g3v0191559.2
– Methyltransferases isoform 1 [Theobroma cacao] gi|508781919|gb|EOY29175.1|
Domains
9
Lj0g3v0266349.1
– RNA methyltransferase-like protein [Medicago truncatula] gi|357517191|ref|XP_003628884.1|
Domains
7
Lj0g3v0266349.2
– RNA methyltransferase-like protein [Medicago truncatula] gi|357517191|ref|XP_003628884.1|
Domains
7
Lj0g3v0266349.3
– RNA methyltransferase-like protein [Medicago truncatula] gi|357517191|ref|XP_003628884.1|
Domains
13
Lj0g3v0266349.4
– RNA methyltransferase-like protein [Medicago truncatula] gi|357517191|ref|XP_003628884.1|
Domains
6
Lj1g3v0318000.2
– PREDICTED: ribosomal RNA small subunit methyltransferase E-like [Cicer arietinum] gi|502120160|ref|XP_004496867.1|
Domains
11
Lj1g3v2994560.1
– TRNA guanosine-2'-O-methyltransferase [Medicago truncatula] gi|357502123|ref|XP_003621350.1|
Domains
15
Lj1g3v2994560.2
– TRNA guanosine-2'-O-methyltransferase [Medicago truncatula] gi|357502123|ref|XP_003621350.1|
Domains
17
Lj2g3v1457490.1
– TRNA/rRNA methyltransferase family protein isoform 2 [Theobroma cacao] gi|508776922|gb|EOY24178.1|
Domains
6
Lj4g3v1212310.2
– TRNA/rRNA methyltransferase family protein isoform 1 [Theobroma cacao] gi|508776921|gb|EOY24177.1|
Domains
8
Lj4g3v2375050.1
– PREDICTED: 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB-like [Cicer arietinum] gi|502151214|ref|XP_004508331.1|
Domains
8
Lj4g3v3043940.1
– TRNA/rRNA methyltransferase family protein [Theobroma cacao] gi|508783395|gb|EOY30651.1|
Domains
16
Lj5g3v2058560.1
– OB-fold-like isoform 1 [Theobroma cacao] gi|508713706|gb|EOY05603.1|
Domains
9
Lj6g3v1422200.1
– PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like isoform X2 [Cicer arietinum] gi|502124098|ref|XP_004498384.1|
Domains
7
LotjaGi1g1v0174700.1
– Ribosomal RNA small subunit methyltransferase E; TAIR: AT1G50000.1 methyltransferase; Swiss-Prot: sp|O66552|RSME_AQUAE Ribosomal RNA small subunit methyltransferase E; TrEMBL-Plants: tr|A0A0S3SM93|A0A0S3SM93_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0174700
Domains
12
LotjaGi1g1v0174700.2
– Ribosomal RNA small subunit methyltransferase E; TAIR: AT1G50000.1 methyltransferase; Swiss-Prot: sp|O66552|RSME_AQUAE Ribosomal RNA small subunit methyltransferase E; TrEMBL-Plants: tr|A0A072VQR6|A0A072VQR6_MEDTR Ribosomal RNA small subunit methyltransferase E; Found in the gene: LotjaGi1g1v0174700
Domains
10
LotjaGi1g1v0275200.1
– Ribosomal RNA small subunit methyltransferase NEP1; TAIR: AT3G57000.1 nucleolar essential protein-like protein; Swiss-Prot: sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1; TrEMBL-Plants: tr|I3TAC5|I3TAC5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0275200
Domains
8
LotjaGi1g1v0508500.1
– TRNA guanosine-2'-O-methyltransferase; TAIR: AT5G15390.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|O67577|TRMH_AQUAE tRNA (guanosine(18)-2'-O)-methyltransferase; TrEMBL-Plants: tr|G7L451|G7L451_MEDTR tRNA/rRNA methyltransferase SpoU family protein; Found in the gene: LotjaGi1g1v0508500
Domains
9
LotjaGi1g1v0508500.2
– TRNA guanosine-2'-O-methyltransferase; TAIR: AT5G15390.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|O67577|TRMH_AQUAE tRNA (guanosine(18)-2'-O)-methyltransferase; TrEMBL-Plants: tr|G7L451|G7L451_MEDTR tRNA/rRNA methyltransferase SpoU family protein; Found in the gene: LotjaGi1g1v0508500
Domains
18
LotjaGi4g1v0173100.1
– RRNA methyltransferase; TAIR: AT4G38020.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|P94538|YSGA_BACSU Uncharacterized tRNA/rRNA methyltransferase YsgA; TrEMBL-Plants: tr|G7LIJ4|G7LIJ4_MEDTR tRNA/rRNA methyltransferase SpoU family protein; Found in the gene: LotjaGi4g1v0173100
Domains
13
LotjaGi4g1v0195000.1
– TRNA/rRNA methyltransferase family protein; TAIR: AT4G17610.2 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|Q13395|TARB1_HUMAN Probable methyltransferase TARBP1; TrEMBL-Plants: tr|A0A0R0FD66|A0A0R0FD66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0195000
Domains
14
LotjaGi4g1v0348400.1
– TRNA guanosine-2'-O-methyltransferase; TAIR: AT4G15520.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|Q6FF50|RLMB_ACIAD 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; TrEMBL-Plants: tr|K7MJI7|K7MJI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0348400
Domains
9
LotjaGi4g1v0445300.1
– RRNA methyltransferase; TAIR: AT2G19870.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|O94631|MRM1_SCHPO rRNA methyltransferase 1, mitochondrial; TrEMBL-Plants: tr|I1KPW8|I1KPW8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0445300
Domains
18
LotjaGi5g1v0064600.2
– Ribosomal RNA large subunit methyltransferase H; TAIR: AT5G10620.1 methyltransferase; Swiss-Prot: sp|Q9LXB4|Y5620_ARATH Putative RNA methyltransferase At5g10620; TrEMBL-Plants: tr|I3SEK8|I3SEK8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0064600
Domains
10
LotjaGi5g1v0261900.1
– TRNA (cytidine(34)-2'-O)-methyltransferase; TAIR: AT5G26880.1 tRNA (cytidine(34)-2'-O)-methyltransferase; Swiss-Prot: sp|P74516|TRML_SYNY3 Putative tRNA (cytidine(34)-2'-O)-methyltransferase; TrEMBL-Plants: tr|I3S4V5|I3S4V5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0261900
Domains
11
LotjaGi5g1v0316800.1
– OB-fold-like, putative isoform 2; TAIR: AT5G19300.1 methyltransferase C9orf114 protein; Swiss-Prot: sp|Q5T280|CI114_HUMAN Putative methyltransferase C9orf114; TrEMBL-Plants: tr|I1NGB5|I1NGB5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316800
Domains
12
LotjaGi5g1v0316800.2
– OB-fold-like, putative isoform 2; TAIR: AT5G19300.1 methyltransferase C9orf114 protein; Swiss-Prot: sp|Q5T280|CI114_HUMAN Putative methyltransferase C9orf114; TrEMBL-Plants: tr|I1NGB5|I1NGB5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316800
Domains
12
LotjaGi6g1v0247500.1
– Ribosomal RNA small subunit methyltransferase NEP1; TAIR: AT3G57000.1 nucleolar essential protein-like protein; Swiss-Prot: sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1; TrEMBL-Plants: tr|I3TAC5|I3TAC5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0247500
Domains
9
LotjaGi6g1v0247500.2
– Ribosomal RNA small subunit methyltransferase NEP1; TAIR: AT3G57000.1 nucleolar essential protein-like protein; Swiss-Prot: sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1; TrEMBL-Plants: tr|I3TAC5|I3TAC5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0247500
Domains
13

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 2.94