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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0249700 |
| Transcript ID | LotjaGi6g1v0249700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Xyloglucan 6-xylosyltransferase 1; TAIR: AT3G62720.1 xylosyltransferase 1; Swiss-Prot: sp|Q9LZJ3|XXT1_ARATH Xyloglucan 6-xylosyltransferase 1; TrEMBL-Plants: tr|V7B015|V7B015_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0249700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56139235..56142036) extracted from Lotus japonicus Gifu genome v1.2.
CAATATCTCTTCAATGTCGATCATCGACTTAAGAACACATGTGGGTCGACTTCCCCTTAAGAGCCACTTTAGGGGGGAAT TCAAACCACATCTTCCTGTATTTTCCCTACTCGAATCTCCCAAGGTCAAATGTCTGTTGCACTAGAACCAAGCATTACGT ATGAGGAAGGATTGAACTAGTGGTAGAGCCTAGATCCACCATCCCTTCATCTTTATAAACAAGGTTTGACCCAGACAAAC GAAGAATTCATTGTGTCGTATGTTGTACATAGGAATCCAAGTGATGCTGAACCAATATAGAACGCTTCGAGTTACTTCCT AATTCATATTTCATATTGAGAAAATCAGGTTTTGCCCTCAGCTGGCCATGGCACTTGACTCATATAACTATTCATTTCTT GAAAATCATTACTCATTAGGTCGTGGGATGATGCTGATGAATGAGCATATTCCATAGAACATGGTAACCATACCCCCCAA GGCTCATGCCATTGTTAGCTGTATTGCCTTTCTCTCACCCATTTGAAAATAAAGTTTTTGTCCCATGATCGTAGTATCAT TTTAAAATCATATGACTAGACATTATATTAAAGTCACAACATTTTATTGTATATAGTCAACAGATTTTAAAAGTGAAACA TCTGAGTTCGTAATCGAGTTGGTGTCGCCGGAACCGAGTCAACTCAGACAATGCTGGGAACTCGGCGATTCCGTCAAATT CAAAGGTGGTGCCGCCGCAACACCCTCACCTTCCTCTGCCTCTTCCCCACCGTCCTCGTCCTCCGCGGCACCATCGGCAC GCCGGAGCAAGACCTCAACGAGTTCCGCAACCACCTCTCCGCCGCCCGCACCCGTCGCGTACTAGAAGAAAAAACTCAAC CCGACGGCGGCGACAATAACAACCACCACGCCACCTTCGACCTCTCGAAAATCCTCGTCGACGAAGACTCCGGCGACGAC GAAAAGCGTGACACAAACGCAGCCTACACCCTCGGCCCAAAGATTTCAAACTGGGACGAGCAGCGGCGTGAGTGGCTCCG GAACAATCCGGGTCACCGGAGCTTCACCGGACCGAACAAGCCTCGGGTCCTTCTGGTAACTGGGTCGTCGCCCAAACCAT GTGAGAATCCGGTGGGTGATCATTACCTTGTGAAGTCGATTAAGAACAAGATAGACTATTGCAGGGTTCATGGGATTGAG ATTTTCTACAACATGGCTCTGTTGGATGCTGAAATGGCAGGGTTTTGGGCCAAGCTTCCTCTGATTCGGAAGCTTTTGCT GTCTCACCCTGATGTTGAGTTTCTATGGTGGATGGACAGTGATGCTATGTTCACTGACATGGCATTTGAGGTGCCTTGGG AAAGGTATAGGAATCACAACTTTGTGATGCATGGTTGGAATGAGATGGTGTATGATGAGAAGAATTGGATTGGTTTGAAC ACTGGGAGTTTTCTGTTGAGGAATTGTCAGTGGTCTTTGGACATTCTTGATGCTTGGGCACCAATGGGGCCTAAAGGGAA AATCAGGGATGAGGGTGGGAAACTGCTCACTAGGGAGCTGAAAAACAGGCCTGTTTTTGAAGCTGATGATCAATCTGCTA TGGTTTATTTGTTGGCTACTGAGAGAGGGAAATGGGGTGATAAGGTTTACCTTGAGAATGGTTATTACTTGCATGGTTAT TGGGGGATTTTGGTGGATCGTTATGAGGAGATGATTGAGAATTTTCACCCTGGTTTTGGGGATCATAGGTGGCCTTTGGT TACTCACTTTGTGGGTTGCAAGCCATGTGGTAAGTTTGGGGATTACCCTGTTGAGAGGTGCTTGAAACAGATGGACCGTG CTTACAATTTTGGGGACAACCAGATTTTGCAGATGTATGGGTTCACTCACAAGTCACTTGCTAGTCGCAGGGTGAAAAGA GTGAGGAATGACACTAGTAATCCTACTGATGTTACAGATGAGTTTGGGTTGCTTCATCCAGCTTTCAAAGCTATCAAGCT TCCACCCTCTTCTTCATGATGATGATGGAAGGCTTATGAAGGTTATAATTAGCTTTGAGTTCTTGCATGTTTGGATCAAT TTATCTTTCCTCGTAATCAATTTTGACACTCATGAACCACTCGCATGAGCTTCTTCACATAATTTGATTTTGACTCCAGG CACTTCAGTCTTCAAGTGTAGATATTGGTTGTGTTCCAACTTCCTACAACTATTCATTCACCTGCTGCCATTGAAAAAGT GTGTAATTGTTAGCTTTTCATCATCATAGCCATAGCTATAGCGTCTCAAAGTTGTAATCTTCAATTAATTTTGCTTTTAC TCATCATTCTTTTAACTAATTACATTTTTTTCTTGTTCATTTCTCACTTAAGTCTATGTGGGATGCTAATGCTATGCTGG TGACTCCAAACCATTTTTCTTAAGTGTAAGTTACAATTGGACAGAGGTTGAAGTTTTATGTTTCAGAAAGCATGATTGTA GCACGGGCAAATGTAAGGTTTGTTGGTAAATGTAGCATCGACCACAAATCGCCGCTAATTGCCAGCGGCCAGACACTACA TTTGCTGATGATTTTAGTGTTCGTCTAAGCTGAAGCTAAATGTCCTACCTTATGTTAATTGACATAAGGTAGTTAAGTGG GTGTTTTTCCGCTAATGAGCGAAAATTGGCGTTCGTGTTGTGGATGATGCTAATTTTGAATGTTAGAGGCCTAAAACTGA GTTTTCTTGTAGTGAAATAAGAAAGAAAGTAATATTATTTTAAGGTTGTTTTAGTATGATAGAAAGGTAAAGAAAATTAG AG
CDS sequence (LotjaGi6g1v0249700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGGAACTCGGCGATTCCGTCAAATTCAAAGGTGGTGCCGCCGCAACACCCTCACCTTCCTCTGCCTCTTCCCCAC CGTCCTCGTCCTCCGCGGCACCATCGGCACGCCGGAGCAAGACCTCAACGAGTTCCGCAACCACCTCTCCGCCGCCCGCA CCCGTCGCGTACTAGAAGAAAAAACTCAACCCGACGGCGGCGACAATAACAACCACCACGCCACCTTCGACCTCTCGAAA ATCCTCGTCGACGAAGACTCCGGCGACGACGAAAAGCGTGACACAAACGCAGCCTACACCCTCGGCCCAAAGATTTCAAA CTGGGACGAGCAGCGGCGTGAGTGGCTCCGGAACAATCCGGGTCACCGGAGCTTCACCGGACCGAACAAGCCTCGGGTCC TTCTGGTAACTGGGTCGTCGCCCAAACCATGTGAGAATCCGGTGGGTGATCATTACCTTGTGAAGTCGATTAAGAACAAG ATAGACTATTGCAGGGTTCATGGGATTGAGATTTTCTACAACATGGCTCTGTTGGATGCTGAAATGGCAGGGTTTTGGGC CAAGCTTCCTCTGATTCGGAAGCTTTTGCTGTCTCACCCTGATGTTGAGTTTCTATGGTGGATGGACAGTGATGCTATGT TCACTGACATGGCATTTGAGGTGCCTTGGGAAAGGTATAGGAATCACAACTTTGTGATGCATGGTTGGAATGAGATGGTG TATGATGAGAAGAATTGGATTGGTTTGAACACTGGGAGTTTTCTGTTGAGGAATTGTCAGTGGTCTTTGGACATTCTTGA TGCTTGGGCACCAATGGGGCCTAAAGGGAAAATCAGGGATGAGGGTGGGAAACTGCTCACTAGGGAGCTGAAAAACAGGC CTGTTTTTGAAGCTGATGATCAATCTGCTATGGTTTATTTGTTGGCTACTGAGAGAGGGAAATGGGGTGATAAGGTTTAC CTTGAGAATGGTTATTACTTGCATGGTTATTGGGGGATTTTGGTGGATCGTTATGAGGAGATGATTGAGAATTTTCACCC TGGTTTTGGGGATCATAGGTGGCCTTTGGTTACTCACTTTGTGGGTTGCAAGCCATGTGGTAAGTTTGGGGATTACCCTG TTGAGAGGTGCTTGAAACAGATGGACCGTGCTTACAATTTTGGGGACAACCAGATTTTGCAGATGTATGGGTTCACTCAC AAGTCACTTGCTAGTCGCAGGGTGAAAAGAGTGAGGAATGACACTAGTAATCCTACTGATGTTACAGATGAGTTTGGGTT GCTTCATCCAGCTTTCAAAGCTATCAAGCTTCCACCCTCTTCTTCATGA
Protein sequence (LotjaGi6g1v0249700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGTRRFRQIQRWCRRNTLTFLCLFPTVLVLRGTIGTPEQDLNEFRNHLSAARTRRVLEEKTQPDGGDNNNHHATFDLSK ILVDEDSGDDEKRDTNAAYTLGPKISNWDEQRREWLRNNPGHRSFTGPNKPRVLLVTGSSPKPCENPVGDHYLVKSIKNK IDYCRVHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPDVEFLWWMDSDAMFTDMAFEVPWERYRNHNFVMHGWNEMV YDEKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKIRDEGGKLLTRELKNRPVFEADDQSAMVYLLATERGKWGDKVY LENGYYLHGYWGILVDRYEEMIENFHPGFGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAYNFGDNQILQMYGFTH KSLASRRVKRVRNDTSNPTDVTDEFGLLHPAFKAIKLPPSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 36 | 36 | - | – | |
| Phobius | 1 | 36 | 36 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| PANTHER | 14 | 440 | 427 | 4.7E-243 | – | |
| PANTHER | 14 | 440 | 427 | 4.7E-243 | – | |
| Phobius | 19 | 31 | 13 | - | – | |
| Phobius | 32 | 36 | 5 | - | – | |
| Phobius | 37 | 442 | 406 | - | – | |
| Pfam | 130 | 369 | 240 | 8.9E-72 | ||
| Gene3D | 131 | 269 | 139 | 1.4E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transferase activity, transferring glycosyl groups | Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi6g1v0249700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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