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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0252800 |
| Transcript ID | LotjaGi6g1v0252800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT3G16770.1 ethylene-responsive element binding protein; Swiss-Prot: sp|P42736|RAP23_ARATH Ethylene-responsive transcription factor RAP2-3; TrEMBL-Plants: tr|A0A140WWF2|A0A140WWF2_LOTCO AP2/ERF; Found in the gene: LotjaGi6g1v0252800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56513512..56516823) extracted from Lotus japonicus Gifu genome v1.2.
ATAAATCTAGATAGATAGATAGATACACTGCAACACACGTTCTCTCTCACTTTTATTTTCTTTGTTCTTCCCCCCATTGC TCTCATTATCATCATAGCAGCGACAAGTACTATTAATTTTCTCTCTTTCTCTCGACATGTGTGGAGGTGCTATCATCTCA GACTTCATTGCTGTCAAGCGTGGCCGCAACCTTGCCCCACAGGAGATATGGTCTGAGCTTGATCCTTTCTCTGATTTTGC TGCCTTTGATGCTGCTTCTGCTGGTGCTGCTGTTTCCACCACCCCAACTTCCAAATCCTCCTCACCACCCCTCAACTTTG ATGATGTGATTCAAGTCCCTGACCAAAAAGGTTTGATTTCTTACCTACCATTATCAATTTTTGTTCTATGTAGATATCTA TTTCTTCACACAAAGTGCTTTTCCTATCTAACTTTTTTCTCACCCAACTTCTTCATCATGAGCATGTCATGCTTATTTGA AACGGCAAAAAAATGTTTTTTTTTTCTCTCATTAGATTACCCACATGTTGATCATGTATAAAATCATCATTTTTACTTAA CTTGGACTATCATATGTATGTGAAATTCTGTTTCTGTGTGATTCATCTGGCTATGATCGATAACTAGTTTTTTTTAGGGG GTGGTATTTGGTGAATGCCTTCGAATGAAAAAATGAAGTAAAGTTGAAGCTTTTTTCACCAACTTTGACATTAGTAAGCC AATGTTTCATTTGCTCACGTTTTTCATAGGAATTGAAAATTGGGGTAGATTAGAAAAAGGTAAAATTGATAACTTTGGAG TTTTTAACCTGAGAAACGTGTTAAATATTTAATTAATCAAACCCTTGAGGTGATCCTGAACATGTCACATGCTCTTTCTT GTTTCCAGAAAATTCATAGCTATTAGCTAGGGACCAAAACTGGAAAAAATATTTACTAACTTTTTTAATATTCTGAAGAT TTTCTGAGTGTGGTCACGTGATGATGACGCTAATGATGTTTTTATGTGGCAGTGGCAGGATGTGACAAGAAAGGTGAGAA GAAGAAAAGCGTGGTGGGTTCTGGTGGTGCAGGGAAGAAGAACGCTCGCAAGAACGTGTACAGAGGAATCAGGCAGAGGC CATGGGGCAAGTGGGCCGCTGAGATAAGGGACCCACAAAAGGGTGTCCGTGTCTGGCTCGGCACTTTCCCCACCGCCGAA GAAGCTGCCAGAGCCTATGACGAAGCCGCCAAGCGCATCCGCGGTGACAAGGCCAAGCTCAATTTCCCTGACACCGTGGC GGCTCCGCCTCCTACCAAGAAGCAACGCTGCCTCAGCCCTGAGCAGCCGGAGTACAGCTCCTCCGGCAGCTCCGGGCCCA CCACCACCACCACCGGGTCCTCTGACAGCTCCGCACCCATCATCACCACCGGGCTCGAGGATCAGCCTAACCTGAAGCTG CAAATCTCTGACATTGAGTGGTTTTTGGGCCTCGACAATGAGCCGGTCCAGGCCCAAGCCCAGATCCAGGCCCAGGCTGA GCCTCTGCCTGGTGGTGATGCTGAGTGGGAGAGCGATTTCATGGACCTGTGGATGCTTGACGACGTCGTCATGACTAACC GTCACCCGGTTTACTAGGAAGTGGAGTGTTTTGTCTCCTTATGAGCTTAATTAATATTCCAAACTTTCTTGGATTTAGTG ATTGTATAAAACTAAGTTACTTGTGTTCTTTGTTTCTGCTGTTTTCTTTTGTTGGACGGTGACATGTTGGATGATTTCAT TTTGGTGCATCGTATTATGATTGTGATTATGACTAAATAATGGTAGGTAAGGGGCGTTTGCATGTTTATGGTAGATATGT GTGTGTGTAAGTGTGTTGTTTGTGTATAATATGTGGCATATGATGTGGTGCTTGTCGTTTATGAAGTGTGTTCAGCAGAA TTGTGGAGTTGATGAATGAATCTCGTGTGTCTACTATCTAGAACAAGCTAATTGATTGTCGATATCATCATCATGTATGT TTAATTAATTAATTGATAATTTAATCATGCTTGTTATGACAAGTAATCTAGAATATTAATCTATTATCTAGAAAAGGCTT GATTGACAATCATGTATGTGCAACTAGTTAATTATTTAATCTTACTAGCTATTTTAAGTCATCTCAGATTTATAAATCTG TATGACAAACAAATAGTGTTTTCCTAAATATCTATCCACTAGTTTTGTTAGTTATCACCTGCCATTTGACTTCACTAGCT TTTTGTGTATATCTATAGTTCTATAGACAGATATTTAATTGTATATTATCTTCAGGGGTTATGATAGATTGGAATATGTA TATTAGTAAAATTTTAGAAGGAAGAAATCTGTAGAGACATGAAAGATTTTGAAGGCTCCGGCCACCATGTTGCTCCCTCA TCAAGGCCTAGATTGACTGTAGAGATCTCCTCAGAGATGTAACCTGAGGCTCAAACACATTCAACGTTTCTAGTAGAATA TATCCCTATCCGATAATATTGATGAGGTGGTGGGGCTTATTGGTTCCACCAAAAGCATTTGGAGTAGAAGTAGACCCTCC CCAGCCATAATAGCACCATCTAGTTGTTGTAGTCTGAAACAAAGTTTTGTTTGACTACTTGCGTGCTAACCAAAATGCAA CCTGAATTCATTCAAGTTTGAGTTCTCTCCATTTGTGAATTAATTTATGGTGAAACAATGTGAACTATATTAGACAAACG GGTTTTAAGTAGGCATGTAATCAGTAAGGAAATAGCATTCTGTGTTCAACAGCCAAGTAAGTGTTAGGGCGTATGTTCCA GAGAAGAATGTGAGTTCCCGTGCAGGGGGGAGGGGGGAGGGGGGGGGGGGAATTATATATGGGCAGGTTCTATTTATATA TCATGAAATGAGTAAGTGTTTGGGATGGGTACGGTTGTGGACTTGTGGGTAATGACTTGTAGTAGAAGCTTAAGGTTTGA CAAGATGAGGCATCATCAATTAAGTTGCAGAAAATGGGGGAAAAGTTTAGGTTAGCGCAATTCATACTGGGACAGAGTTT GATGGTGTTGGTGAAGATGATGGGCACTCGATGAGGGAGGTGAAGATGAAGAAGATGGGAAGCAATTATGTTTTTGTCAA GGGGTTGTCTAAATGACCCTTGTTAAAAATTGGGTTAAATCACCCTTTAATGAAGTGTTCCAATGATATTATAACATGTG TTTTTAAAAATTCCAACTCATTTCAATATTCTTTTAATTTTATATTTTCATAATAGTCATTTTATTAAATAATTTATTTG CACAATAAACCAATTAATTAGAATAATAACAC
CDS sequence (LotjaGi6g1v0252800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTGGAGGTGCTATCATCTCAGACTTCATTGCTGTCAAGCGTGGCCGCAACCTTGCCCCACAGGAGATATGGTCTGA GCTTGATCCTTTCTCTGATTTTGCTGCCTTTGATGCTGCTTCTGCTGGTGCTGCTGTTTCCACCACCCCAACTTCCAAAT CCTCCTCACCACCCCTCAACTTTGATGATGTGATTCAAGTCCCTGACCAAAAAGTGGCAGGATGTGACAAGAAAGGTGAG AAGAAGAAAAGCGTGGTGGGTTCTGGTGGTGCAGGGAAGAAGAACGCTCGCAAGAACGTGTACAGAGGAATCAGGCAGAG GCCATGGGGCAAGTGGGCCGCTGAGATAAGGGACCCACAAAAGGGTGTCCGTGTCTGGCTCGGCACTTTCCCCACCGCCG AAGAAGCTGCCAGAGCCTATGACGAAGCCGCCAAGCGCATCCGCGGTGACAAGGCCAAGCTCAATTTCCCTGACACCGTG GCGGCTCCGCCTCCTACCAAGAAGCAACGCTGCCTCAGCCCTGAGCAGCCGGAGTACAGCTCCTCCGGCAGCTCCGGGCC CACCACCACCACCACCGGGTCCTCTGACAGCTCCGCACCCATCATCACCACCGGGCTCGAGGATCAGCCTAACCTGAAGC TGCAAATCTCTGACATTGAGTGGTTTTTGGGCCTCGACAATGAGCCGGTCCAGGCCCAAGCCCAGATCCAGGCCCAGGCT GAGCCTCTGCCTGGTGGTGATGCTGAGTGGGAGAGCGATTTCATGGACCTGTGGATGCTTGACGACGTCGTCATGACTAA CCGTCACCCGGTTTACTAG
Protein sequence (LotjaGi6g1v0252800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCGGAIISDFIAVKRGRNLAPQEIWSELDPFSDFAAFDAASAGAAVSTTPTSKSSSPPLNFDDVIQVPDQKVAGCDKKGE KKKSVVGSGGAGKKNARKNVYRGIRQRPWGKWAAEIRDPQKGVRVWLGTFPTAEEAARAYDEAAKRIRGDKAKLNFPDTV AAPPPTKKQRCLSPEQPEYSSSGSSGPTTTTTGSSDSSAPIITTGLEDQPNLKLQISDIEWFLGLDNEPVQAQAQIQAQA EPLPGGDAEWESDFMDLWMLDDVVMTNRHPVY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 47 | 202 | 156 | 1.0E-55 | – | |
| PANTHER | 47 | 202 | 156 | 1.0E-55 | – | |
| MobiDBLite | 76 | 95 | 20 | - | – | |
| Gene3D | 99 | 160 | 62 | 1.3E-31 | ||
| SUPERFAMILY | 100 | 158 | 59 | 6.34E-23 | ||
| ProSiteProfiles | 100 | 157 | 58 | 24.513 | ||
| SMART | 100 | 163 | 64 | 1.9E-37 | ||
| Pfam | 100 | 149 | 50 | 1.3E-14 | ||
| PRINTS | 101 | 112 | 12 | 8.7E-12 | ||
| CDD | 101 | 159 | 59 | 1.56474E-34 | ||
| PRINTS | 123 | 139 | 17 | 8.7E-12 | ||
| MobiDBLite | 155 | 206 | 52 | - | – | |
| MobiDBLite | 173 | 206 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0252800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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