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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0253700 |
| Transcript ID | LotjaGi6g1v0253700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT3G16850.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|A0A0R0GA40|A0A0R0GA40_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0253700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56594190..56597709) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTACACCCTGATTTCATATTAAGAAAAGATTCTTACCAAATATTTGTACATACATGTCCACCTATGAATGGACCAT TAATCTTCACCTTTCCTGTCAGTTACATGTGTAAATCAATGCTTATAATAATACTCACAAAACTGCATAAAGCTGCTTCT GCTTCTTCTTCTTCCTCCTTTTCCTTCTCTCTCTCTTTCTCTCTCTGTTTCTCTTGCAATTTCATTTTTTTTTTCCTTTT CACTTGTGTTTGCTTTGGCACTAGTGCCGGTTCTTGTCTCCCTCGGTCTCTGACCTTGTTTCCAGCTTTGACCAAGAACA TGCTTGTAAGTACGTTTCTCTGCTTCATGTTCTTCTACATGCTACTTCTAAATCTGGGACGTCATTGCTGTGTTCAAAAC TGAGATGGAATGCTCAAGTTTCAATATTTTGCTGGATTTTCTGTGTTTAAGTCAATGTTTGTGTGTTTCATTGACATGGG TCATCTCATCTTCTATGTGTGTGATTCTGTTTGAATGGTTTTGTTTCTTGTATTAGCATGGAACATGGTAATGTTGTTCA TTGCTGTCTTTGGTGGTGCTATCAGATTCCATTTTGTTTGATCTGATTAACTTGCATTCTAATTTCAGCTAGGAGCTTCC TTTGAAGTTCTTAGTAGACATCTGTACTTGATTTGGAATTTGTTGAAGTCATTATCAATTATACCATATTCAATGATTGG TGTGTGGTGTTACATTTTGCCTCATCAATGAAAATGAGCATTGTGCTCTGAATCTATGTTTGCTGTCTTGTTTCATTGTT TTTAATTTAATATGAATTGATTGAATTCATTCACTTCTCTGTTTCTCTGCAATGGTTTTGCTTTGTATTCCAGAAAAGTT TTTTAAGCTTGAGTTTTTACTTCATGGATAAATTTCTTATCTCTATTCATCACTGAATTATGCTTGACTCTATTTCCTTG AGTTTCATTCTGAGATTTAATTTTGTGTTTAGTTATTGAATTTTCAGGATATCTTATTGCATTTTTTGTTGCTTTCTTTT ATCCTCTTTCAGTTGGCATTGCCCTTGCTGCTGGCACTGAGCAATGCCTTGAGAGCTTATGGAGTTGGTGAGCAATGTGG TTCTAATCCAACACTAGATCCTAGACCCCACAGTGTCTCCATTTCTGAGTTTGGTGCTGTTGGAGATGGCAAAACACTGA ACACCATTGCATTCCAGAATGCTATCTTCTATCTCAAGTCTTTTGCTGACAAGGGTGGCGCTCAGCTGTACGTCCCGCCC GGAAAATGGCTCACCGGCAGTTTCAACCTTACCAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATCATTGGATC TCAGGTATTTTACCTCTGGCTTCTTAGTGCATTTTTAGAATTCTTTCTACAATTTTTTGAAGCCAAAATTAATTTGTGGA AGAAAGGTCTATGAGTAGCTTCTGCGTGTAAGAATTGATTATGAGGACATAGAAGTTGATTCAAACGCGCTATTACTTAT TGTTTTTACGTGCTTTTGAATACTCTCTTGTGTGTATAGATATATCATGGTACTCAAGATTGGTTTCTCTTAGGCTTTGT TTGTTTTTACATGTCATTCTTCCTTGTTTAGGATCCATCTCACTGGGAAGTTATTGAACCCTTACCTTCTTATGGCCGAG GGCTCGAAGTCCCTGGGGGAAGATATCAGAGCTTGATAAATGGATACAAGTTACATGATGTGGTCATAACAGGTTTTCTA TCTACTCCCAAGCCATTGTCTCTTTTTTTTCAGCTAACCTTTTATGTATCTATTTGTGGATTGAACTTCATATCTTTATG TGCTTCCCCAGGTAACAATGGAACCATTGATGGCATGGGAATGGTTTGGTGGGAGTGGTATAGCTCCCATTCCTTAAACC ACAGCCGTCCTCATCTGGTTGAACTTGTTGCATCTGATTATGTAGTAGTTTCAAATCTCACATTCTTGAATGCCCCATTA TATAGCATCCACCCAGTTTATTGCAGGTACATATTCTCTGCTTCTTTAGTCCTCAAATGAAATAACTTTACCAGAAAAAA GTCATATTGATCTAGTTATATGTGATGTGTTGCAGCAATGTACATATTCAAAACGTTTCAATCTCTACTCCTCCAGAATC CCCTCATACTATTGGCATAGTACCAGGTTTGTAACATATTATATTACATATGGACACTGCCTCTCAAATATCAATAACTT ACTAAGCTCTGTTGAGGACCACTTAGAGCTTGTTTGTGTGCAGACTAAAGATAACTTATTGGAGTTTATCCGGTGTTTTT TCCAGTAGATAAGCTCCAGTCAGTGCTCTTTCTTAAATGGGATCTTAGCTGACATTACTTTTATGTTTTCAGATTCTTCT GATAATGTATGTATAGAAGATTGTATCCTTGCTTTGGGATTTGATGCAATTACTCTGAAAAGTGGCTGGGATGAGTATGG CATTGCCTATGGCAGGCCAACTGAGAATGTACACATAAGAAGGGTGCATCTTCAAGCATCTTCTGGCTCTGCTATTGCAT TTGGCAGTGACATGTCTGGCGGAATTTCAAATGTTTTGGTGGAGCATGTTCATCTTTTCAACTCAAATAGTGGTATTGGA TTCAGAACCACAGAAGGAAGAGGTGGTTACATGAAGGAAATTGTTCTATCAGATATACAGATGGAGAATATCCACACGGC AATCGCGGTCACAGGTCATTGCGGGTCTCATCCTGATGACAAATTTGATCCAAATGCCCTCCCAATTTTGGATCAAATCA CCTTGAAGGATGTTACTGGCAAAAACATCACCATTGCTGGAAACTTTGCTGGAATAGAAAAATCCCCCTTCACTAACATA TGCCTTTCCAACATAACCTTTTCTATAAATCCTGTTTCTCCTCTCATTACATGGGAATGCTCAAATGTCTATGGATTTTC AGAATCTGTGTTCCCTGAACCTTGTTCAGAACTTGGGAACCCCACAAATTCTTCATCATCATCATGTTACTACCTGCAGA GTATCAGTGGAAAAACTGCTGAGCTTTGATCACACCCTTTCTCTCAACACAAGATTCTTCTTCATATTCTTGATTACCCT GCTTGATGCCGAAGAAAAAAAAAAGAATTAAGCCACATTCTTTCCAATAAGACGGTTGTTTGATTATAGTTTTTCCTCAT TCCTTAGTTTTGCATTCTTGCATGTTCCTACCCGCACAGCAGATTATTTGTACAGCTTCATTTCTTCATTCATGTGTAAG GAAATTTTGGTAGTGTGGTAACAAGAGGACTCAAGTTTGATAGTTTTGCATTAGTTCCATCGTGATTTTTCTGTAAAGCA TGTAGTGGATTTGGTGATACTTCAATCAAAGAAAGTTCAAATTTGAGTTACAACTATCCATTTCTTAGTAGTAGTAGTGA TGTTATAGCTGCAGTGTTACGTAGGTTTTTATGCTCAGTTTTGTACAACAGCAGATAAATTCCTCATGATCCAATTGGTC
CDS sequence (LotjaGi6g1v0253700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGGACCATTAATCTTCACCTTTCCTGTCAGTTACATGTGTAAATCAATGCTTATAATAATACTCACAAAACTGCA TAAAGCTGCTTCTGCTTCTTCTTCTTCCTCCTTTTCCTTCTCTCTCTCTTTCTCTCTCTGTTTCTCTTGCAATTTCATTT TTTTTTTCCTTTTCACTTGTGTTTGCTTTGGCACTAGTGCCGGTTCTTGTCTCCCTCGGTCTCTGACCTTGTTTCCAGCT TTGACCAAGAACATGCTTTTGGCATTGCCCTTGCTGCTGGCACTGAGCAATGCCTTGAGAGCTTATGGAGTTGGTGAGCA ATGTGGTTCTAATCCAACACTAGATCCTAGACCCCACAGTGTCTCCATTTCTGAGTTTGGTGCTGTTGGAGATGGCAAAA CACTGAACACCATTGCATTCCAGAATGCTATCTTCTATCTCAAGTCTTTTGCTGACAAGGGTGGCGCTCAGCTGTACGTC CCGCCCGGAAAATGGCTCACCGGCAGTTTCAACCTTACCAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATCAT TGGATCTCAGGATCCATCTCACTGGGAAGTTATTGAACCCTTACCTTCTTATGGCCGAGGGCTCGAAGTCCCTGGGGGAA GATATCAGAGCTTGATAAATGGATACAAGTTACATGATGTGGTCATAACAGGTAACAATGGAACCATTGATGGCATGGGA ATGGTTTGGTGGGAGTGGTATAGCTCCCATTCCTTAAACCACAGCCGTCCTCATCTGGTTGAACTTGTTGCATCTGATTA TGTAGTAGTTTCAAATCTCACATTCTTGAATGCCCCATTATATAGCATCCACCCAGTTTATTGCAGCAATGTACATATTC AAAACGTTTCAATCTCTACTCCTCCAGAATCCCCTCATACTATTGGCATAGTACCAGATTCTTCTGATAATGTATGTATA GAAGATTGTATCCTTGCTTTGGGATTTGATGCAATTACTCTGAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAG GCCAACTGAGAATGTACACATAAGAAGGGTGCATCTTCAAGCATCTTCTGGCTCTGCTATTGCATTTGGCAGTGACATGT CTGGCGGAATTTCAAATGTTTTGGTGGAGCATGTTCATCTTTTCAACTCAAATAGTGGTATTGGATTCAGAACCACAGAA GGAAGAGGTGGTTACATGAAGGAAATTGTTCTATCAGATATACAGATGGAGAATATCCACACGGCAATCGCGGTCACAGG TCATTGCGGGTCTCATCCTGATGACAAATTTGATCCAAATGCCCTCCCAATTTTGGATCAAATCACCTTGAAGGATGTTA CTGGCAAAAACATCACCATTGCTGGAAACTTTGCTGGAATAGAAAAATCCCCCTTCACTAACATATGCCTTTCCAACATA ACCTTTTCTATAAATCCTGTTTCTCCTCTCATTACATGGGAATGCTCAAATGTCTATGGATTTTCAGAATCTGTGTTCCC TGAACCTTGTTCAGAACTTGGGAACCCCACAAATTCTTCATCATCATCATGTTACTACCTGCAGAGTATCAGTGGAAAAA CTGCTGAGCTTTGA
Protein sequence (LotjaGi6g1v0253700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNGPLIFTFPVSYMCKSMLIIILTKLHKAASASSSSSFSFSLSFSLCFSCNFIFFFLFTCVCFGTSAGSCLPRSLTLFPA LTKNMLLALPLLLALSNALRAYGVGEQCGSNPTLDPRPHSVSISEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYV PPGKWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWEVIEPLPSYGRGLEVPGGRYQSLINGYKLHDVVITGNNGTIDGMG MVWWEWYSSHSLNHSRPHLVELVASDYVVVSNLTFLNAPLYSIHPVYCSNVHIQNVSISTPPESPHTIGIVPDSSDNVCI EDCILALGFDAITLKSGWDEYGIAYGRPTENVHIRRVHLQASSGSAIAFGSDMSGGISNVLVEHVHLFNSNSGIGFRTTE GRGGYMKEIVLSDIQMENIHTAIAVTGHCGSHPDDKFDPNALPILDQITLKDVTGKNITIAGNFAGIEKSPFTNICLSNI TFSINPVSPLITWECSNVYGFSESVFPEPCSELGNPTNSSSSSCYYLQSISGKTAEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 6 | 26 | 21 | - | – | |
| Phobius | 27 | 37 | 11 | - | – | |
| Phobius | 38 | 58 | 21 | - | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 59 | 537 | 479 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| PANTHER | 87 | 530 | 444 | 5.0E-283 | – | |
| PANTHER | 87 | 530 | 444 | 5.0E-283 | – | |
| Gene3D | 110 | 504 | 395 | 1.4E-103 | ||
| SUPERFAMILY | 116 | 513 | 398 | 4.72E-89 | ||
| Pfam | 217 | 498 | 282 | 5.2E-29 | ||
| SMART | 265 | 287 | 23 | 2700.0 | ||
| SMART | 288 | 314 | 27 | 4200.0 | ||
| SMART | 315 | 336 | 22 | 3800.0 | ||
| SMART | 349 | 371 | 23 | 580.0 | ||
| SMART | 377 | 398 | 22 | 1200.0 | ||
| SMART | 406 | 427 | 22 | 5200.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0253700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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