Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0256700 |
| Transcript ID | LotjaGi6g1v0256700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor family protein; TAIR: AT4G02080.1 secretion-associated RAS super family 2; Swiss-Prot: sp|O04834|SAR1A_ARATH GTP-binding protein SAR1A; TrEMBL-Plants: tr|I1L0T1|I1L0T1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0256700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56961479..56964527) extracted from Lotus japonicus Gifu genome v1.2.
TTGAAATTAGGGGTGTGAAAGATGAAAATGTGACCTATCTTTAACAAAAAAACAAAAATCACAACTCAGCAAAGGCCAGC TACTCCCAATTAAAGCCAGCTAGCTAGCAACCTTGATTCTTTTCCCCCATTGTCCAATTGGAAAATAAAAATTCAAAACA AAACAAAAAAGAAAAGAAGAAAAAAACAGAGTATACATTCTCATTGACACCACATGCGTTTGAAACGCTGAACTGGCCAC TACATGAGCCAGACAGGCACGTGATTCAATCTTGTGCGATAGATATCTCTCTCTACGATCTTCGATCTGCAACTTCCTCC TCTCTCCTCTCCGATTCGATTTCTGGGTTTCGATCTCACGATTCTCAAAGCAGCATGTTCCTGTTTGACTGGTTCTATGG CATTCTCGCTTCCCTCGGTCTGTGGCAAAAAGAAGCCAAGATCCTCTTCCTCGGTCTTGATAATGCCGGAAAGACCACGC TCCTTCACATGCTCAAAGACGAGGTTCGTTCGTTCGTTCGTTCGTAAATCGTAATTGCTTGCTTCATCTTTCTTTCACTC GGTCTTGATGATTTTCATTTCATTTCATTTCATTTGATTGCAGAGATTAGTTCAGCATCAACCGACCCAACATCCCACTT CCGAGGAATTGAGCATTGGGAAGATCAAGTTCAAAGCCTTTGATCTCGGTGGTCATCAAGTTGCTCGCAGAGTCTGGAAA GATTACTATGCAAAGGTTCAATTTCTGATTTCCCGTAATGCAATTTTGAGTTTTTGAATGTTGGATTTGTCTCTGGTCAT GTGTAGTTGGAGGGGTTTGTTTGGTTGTTAATACAGATAGTTGGTCTTGAAGTGATTCTTTTGTTATTGCTTTGTGCAAT GTGATTTACAGATGGATGGGATGGAACATAGCTGTTGAATGTTGATAGGTTTGCTTGCTCTTTGTAGCATTTTATTGTTT CATTGTTGACCTTAATTGCTTTTGATAAGGTTATGTATGATGCAACTAAGAGATTTAAAACCGGTTATGTAGCTGCTGCT TTACGCGTTTAAATGTTTAATTGGATTTTCTTTCATTGAAATTGCATTATTGCGTTTATAAATAAAGGTTCTAGCATATT GGTTGGTTTATGTTATGAATCTCTGCTATCCTTTTAACCCCCATGCTGGCTTGTTCTTTCATGCTCGCTATATGGGATGC TGGATTTTCGGATGAGGTGTTTGTTCATTGATCTTTTTGTTGAGATGCATTTTGCTGTTTCTGTGAATATTTGAATCTTC TTAGCAATTACATTTTGATATAACACAACTATTGCCTTGATTTTCTAGTGCTCACTGATCCAGAAATTTTTGCCTTCATG AGCCCAGATAAAAGCTAGCTATTTATCTGATTCATGGGAGGCAAATACTGACAGTGTAAATTTTGTTGATAGCACGCGGG AGGCATTTACTAGCTGCCTTGCCGACATGTCCTGTTTTCATTTGATGAATAAGAAATAAAATGCACGTAGAAGAGTGAAG GAATGATGCATAGATCTGTGTAAAAAGGATGATTATTAGACTACCTAATAAATTTAACCATCCCTTTAAGCATTGGAGTA TGCAGTTTTATAAATATTTAATTGATATGTTCTCCCACTTGAGAAGAAGTATCCTGCAACACAGGTTTGAAGTAAATTTG GCAATTATTGCTTATCTAGATGGATCTCCTTTTCTATTCACCAGTTTCTCAGGCATATGTTTGACTTGCTATTTGTTGTT GGTCTTTGTTTGATGTGACTATATTCGAATAATGTTCTATAGCTTCTTCAGGCTGGCGGTTTCTTAAGTAACTCTAAGTT TTTCACTTATCATTGCTTATATAAGCTGTACTGAGCCCTATACTACTGACTACTGAGTGTTATATGGCTGTAGTGTATGT TTGTATACAGTTGAGTGTAATATAAACGCATGTTCAAACGCATTTATTATTGTCTTGAAGTGTGTTTGAACGTGCGTTTT CGCTAATGGGAGTGTTAAGCCAAACATACTCTTAAAATTCTAACCTAAGTTGGTTTTCCAGGTGGATGCGGTTGTTTACC TGGTTGATGCCTACGACAAAGAGAGGTTTGCAGAATCTAAGAAGGAGCTCGATGCATTGCTTTCAGATGAAGCCTTAGCA AGTGTTCCATTTCTTGTGCTAGGCAACAAGATTGACATCCCATATGCATCGTCAGAAGATGAGCTACGATATCATCTAGG CCTCACCAATTTTACCACAGGCAAAGGCAAGGTCAATCTCACAGACTCCAACCTTCGACCTCTCGAAGTGTTCATGTGCA GCATTGTTCGGAAGATGGGATATGGCGAAGGCTTCCAGTGGCTTTCCCAATATATCAAGTAGAGTTCAGCTTCATTTTTG TTCCTCATTCCCAGGTCAACTATCCATGTCTGCAGTTACATCACCAGAGATTTTACCTTTGTTTTTGCTTTTGATTGGAT TATTTGATACAACTGATGTAATATTCCATGATAAGATTTGTATCTTCAATTTTTTTTGGGAATATTATTTTATCCTTTAG AATACTTGGTTCTATTGTAGGATGGTATGATTGGGCAGAAACAAATAAATTTTGAAGAAGCTTGGTACACTTTCTTCCCT GTTATATATGAATGGGATGAGGTTCTCATATTTCTACCTGGTGATCCGATTATGTTTTTACAAAAAAAAAAATAGAGAAC TATGTGCTATTTGTGTAAAGAACTTTCCTTCAATAATTTTTTAATGCTACAAGTTTTATGCTGTCATCTGAATAAAAATC CTATCATTCTCAAATTTCTGTCAATAATCGAGAACCAAATCAGGGAATGAAGTATCTACTGACTTTTTAAAGCTAGGGAA AAAAAAGAAGCAAAGGCTTGAACAAAGTGAGATGCATTAAGGATGATGGGAGGGAAGTTTTGATCACGGAATTAGATATC TAGGAAATGTGGAAGAATAATCCTCATAAACTTTTTAATGACTCAAATGATTTTTTATTAAACTTTAATGCCCGAGGGCC GAGACTATT
CDS sequence (LotjaGi6g1v0256700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCTGTTTGACTGGTTCTATGGCATTCTCGCTTCCCTCGGTCTGTGGCAAAAAGAAGCCAAGATCCTCTTCCTCGG TCTTGATAATGCCGGAAAGACCACGCTCCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCATCAACCGACCCAACATC CCACTTCCGAGGAATTGAGCATTGGGAAGATCAAGTTCAAAGCCTTTGATCTCGGTGGTCATCAAGTTGCTCGCAGAGTC TGGAAAGATTACTATGCAAAGGTGGATGCGGTTGTTTACCTGGTTGATGCCTACGACAAAGAGAGGTTTGCAGAATCTAA GAAGGAGCTCGATGCATTGCTTTCAGATGAAGCCTTAGCAAGTGTTCCATTTCTTGTGCTAGGCAACAAGATTGACATCC CATATGCATCGTCAGAAGATGAGCTACGATATCATCTAGGCCTCACCAATTTTACCACAGGCAAAGGCAAGGTCAATCTC ACAGACTCCAACCTTCGACCTCTCGAAGTGTTCATGTGCAGCATTGTTCGGAAGATGGGATATGGCGAAGGCTTCCAGTG GCTTTCCCAATATATCAAGTAG
Protein sequence (LotjaGi6g1v0256700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQVARRV WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALASVPFLVLGNKIDIPYASSEDELRYHLGLTNFTTGKGKVNL TDSNLRPLEVFMCSIVRKMGYGEGFQWLSQYIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 193 | 193 | 2.2E-129 | – | |
| PANTHER | 1 | 193 | 193 | 2.2E-129 | – | |
| CDD | 2 | 192 | 191 | 5.69052E-132 | – | |
| SMART | 4 | 193 | 190 | 1.1E-18 | – | |
| SMART | 4 | 192 | 189 | 4.0E-134 | – | |
| Pfam | 8 | 192 | 185 | 2.0E-66 | ||
| ProSiteProfiles | 14 | 192 | 179 | 30.209 | ||
| SUPERFAMILY | 17 | 192 | 176 | 3.88E-43 | ||
| TIGRFAM | 19 | 135 | 117 | 3.1E-16 | ||
| Gene3D | 21 | 192 | 172 | 3.0E-60 | – | |
| PRINTS | 22 | 45 | 24 | 3.1E-74 | ||
| PRINTS | 50 | 74 | 25 | 3.1E-74 | ||
| PRINTS | 77 | 102 | 26 | 3.1E-74 | ||
| PRINTS | 122 | 143 | 22 | 3.1E-74 | ||
| PRINTS | 166 | 190 | 25 | 3.1E-74 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of LotjaGi6g1v0256700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…