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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0256700 |
Transcript ID | LotjaGi6g1v0256700.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ADP-ribosylation factor family protein; TAIR: AT4G02080.1 secretion-associated RAS super family 2; Swiss-Prot: sp|O04834|SAR1A_ARATH GTP-binding protein SAR1A; TrEMBL-Plants: tr|G7IMU5|G7IMU5_MEDTR Ras-related small GTP-binding family protein; Found in the gene: LotjaGi6g1v0256700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56961925..56964153) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCCTGTTTGACTGGTTCTATGGCATTCTCGCTTCCCTCGGTCTGTGGCAAAAAGAAGCCAAGATCCTCTTCCTCGG TCTTGATAATGCCGGAAAGACCACGCTCCTTCACATGCTCAAAGACGAGGTTCGTTCGTTCGTTCGTTCGTAAATCGTAA TTGCTTGCTTCATCTTTCTTTCACTCGGTCTTGATGATTTTCATTTCATTTCATTTCATTTGATTGCAGAGATTAGTTCA GCATCAACCGACCCAACATCCCACTTCCGAGGAATTGAGCATTGGGAAGATCAAGTTCAAAGCCTTTGATCTCGGTGGTC ATCAAGTTGCTCGCAGAGTCTGGAAAGATTACTATGCAAAGGTTCAATTTCTGATTTCCCGTAATGCAATTTTGAGTTTT TGAATGTTGGATTTGTCTCTGGTCATGTGTAGTTGGAGGGGTTTGTTTGGTTGTTAATACAGATAGTTGGTCTTGAAGTG ATTCTTTTGTTATTGCTTTGTGCAATGTGATTTACAGATGGATGGGATGGAACATAGCTGTTGAATGTTGATAGGTTTGC TTGCTCTTTGTAGCATTTTATTGTTTCATTGTTGACCTTAATTGCTTTTGATAAGGTTATGTATGATGCAACTAAGAGAT TTAAAACCGGTTATGTAGCTGCTGCTTTACGCGTTTAAATGTTTAATTGGATTTTCTTTCATTGAAATTGCATTATTGCG TTTATAAATAAAGGTTCTAGCATATTGGTTGGTTTATGTTATGAATCTCTGCTATCCTTTTAACCCCCATGCTGGCTTGT TCTTTCATGCTCGCTATATGGGATGCTGGATTTTCGGATGAGGTGTTTGTTCATTGATCTTTTTGTTGAGATGCATTTTG CTGTTTCTGTGAATATTTGAATCTTCTTAGCAATTACATTTTGATATAACACAACTATTGCCTTGATTTTCTAGTGCTCA CTGATCCAGAAATTTTTGCCTTCATGAGCCCAGATAAAAGCTAGCTATTTATCTGATTCATGGGAGGCAAATACTGACAG TGTAAATTTTGTTGATAGCACGCGGGAGGCATTTACTAGCTGCCTTGCCGACATGTCCTGTTTTCATTTGATGAATAAGA AATAAAATGCACGTAGAAGAGTGAAGGAATGATGCATAGATCTGTGTAAAAAGGATGATTATTAGACTACCTAATAAATT TAACCATCCCTTTAAGCATTGGAGTATGCAGTTTTATAAATATTTAATTGATATGTTCTCCCACTTGAGAAGAAGTATCC TGCAACACAGGTTTGAAGTAAATTTGGCAATTATTGCTTATCTAGATGGATCTCCTTTTCTATTCACCAGTTTCTCAGGC ATATGTTTGACTTGCTATTTGTTGTTGGTCTTTGTTTGATGTGACTATATTCGAATAATGTTCTATAGCTTCTTCAGGCT GGCGGTTTCTTAAGTAACTCTAAGTTTTTCACTTATCATTGCTTATATAAGCTGTACTGAGCCCTATACTACTGACTACT GAGTGTTATATGGCTGTAGTGTATGTTTGTATACAGTTGAGTGTAATATAAACGCATGTTCAAACGCATTTATTATTGTC TTGAAGTGTGTTTGAACGTGCGTTTTCGCTAATGGGAGTGTTAAGCCAAACATACTCTTAAAATTCTAACCTAAGTTGGT TTTCCAGGTGGATGCGGTTGTTTACCTGGTTGATGCCTACGACAAAGAGAGGTTTGCAGAATCTAAGAAGGAGCTCGATG CATTGCTTTCAGATGAAGCCTTAGCAAGTGTTCCATTTCTTGTGCTAGGCAACAAGATTGACATCCCATATGCATCGTCA GAAGATGAGCTACGATATCATCTAGGCCTCACCAATTTTACCACAGGCAAAGGCAAGGTCAATCTCACAGACTCCAACCT TCGACCTCTCGAAGTGTTCATGTGCAGCATTGTTCGGAAGATGGGATATGGCGAAGGCTTCCAGTGGCTTTCCCAATATA TCAAGTAGAGTTCAGCTTCATTTTTGTTCCTCATTCCCAGGTCAACTATCCATGTCTGCAGTTACATCACCAGAGATTTT ACCTTTGTTTTTGCTTTTGATTGGATTATTTGATACAACTGATGTAATATTCCATGATAAGATTTGTATCTTCAATTTTT TTTGGGAATATTATTTTATCCTTTAGAATACTTGGTTCTATTGTAGGATGGTATGATTGGGCAGAAACA
CDS sequence (LotjaGi6g1v0256700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCTGTTTGACTGGTTCTATGGCATTCTCGCTTCCCTCGGTCTGTGGCAAAAAGAAGCCAAGATCCTCTTCCTCGG TCTTGATAATGCCGGAAAGACCACGCTCCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCATCAACCGACCCAACATC CCACTTCCGAGGAATTGAGCATTGGGAAGATCAAGTTCAAAGCCTTTGATCTCGGTGGTCATCAAGTTGCTCGCAGAGTC TGGAAAGATTACTATGCAAAGGTGGATGCGGTTGTTTACCTGGTTGATGCCTACGACAAAGAGAGGTTTGCAGAATCTAA GAAGGAGCTCGATGCATTGCTTTCAGATGAAGCCTTAGCAAGTGTTCCATTTCTTGTGCTAGGCAACAAGATTGACATCC CATATGCATCGTCAGAAGATGAGCTACGATATCATCTAGGCCTCACCAATTTTACCACAGGCAAAGGCAAGGTCAATCTC ACAGACTCCAACCTTCGACCTCTCGAAGTGTTCATGTGCAGCATTGTTCGGAAGATGGGATATGGCGAAGGCTTCCAGTG GCTTTCCCAATATATCAAGATGGTATGA
Protein sequence (LotjaGi6g1v0256700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQVARRV WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALASVPFLVLGNKIDIPYASSEDELRYHLGLTNFTTGKGKVNL TDSNLRPLEVFMCSIVRKMGYGEGFQWLSQYIKMV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 193 | 193 | 2.3E-129 | – | |
PANTHER | 1 | 193 | 193 | 2.3E-129 | – | |
CDD | 2 | 192 | 191 | 5.23559E-132 | – | |
SMART | 4 | 195 | 192 | 5.1E-19 | – | |
SMART | 4 | 192 | 189 | 4.0E-134 | – | |
Pfam | 8 | 192 | 185 | 2.1E-66 | ||
ProSiteProfiles | 14 | 192 | 179 | 30.209 | ||
SUPERFAMILY | 17 | 192 | 176 | 4.01E-43 | ||
TIGRFAM | 19 | 135 | 117 | 3.2E-16 | ||
Gene3D | 21 | 192 | 172 | 3.1E-60 | – | |
PRINTS | 22 | 45 | 24 | 3.1E-74 | ||
PRINTS | 50 | 74 | 25 | 3.1E-74 | ||
PRINTS | 77 | 102 | 26 | 3.1E-74 | ||
PRINTS | 122 | 143 | 22 | 3.1E-74 | ||
PRINTS | 166 | 190 | 25 | 3.1E-74 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of LotjaGi6g1v0256700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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