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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0257600 |
| Transcript ID | LotjaGi6g1v0257600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-1,3-glucanase; TAIR: AT4G16260.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q03467|E13B_PEA Glucan endo-1,3-beta-glucosidase; TrEMBL-Plants: tr|I3SKZ9|I3SKZ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0257600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57042335..57043636) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCCTTAATTGAAGTATATATGTATCATTTTTAAGTCCAACACTAATTATATATGTCCATTCAATTTTTGTTGTTGGC TAGCAGATGCTCAAATAGGTGTTTGTTATGGCATGATGGGCAACAACCTCCCATCGGCAAACGAAGTTGTTGCTCTTTAC AAATCAAATAACATCCGGAGAATGCGCCTCTATGATCCAAACCAAGCAGCCCTCCAAGCCCTTCGAGACTCCGGTATCGA GCTCATCCTCGGTGTTCCCAACTCCGACCTCCAAAGCCTCGCCACCAACGCCGACAACGCACGCAACTGGGTGCAGAGAA ACGTCCTCAACTTCTGGCCAAGCGTTAGGATCAAGTACATCGCGGTCGGCAATGAAGTGAGCCCTGTCGGAGGCGCCCCA ACCCAATGGATGGCACAATATGTTCTCCCTGCCACCCAAAACATATACCAAGCCATAAGAGCACAGGGTCTCCATGACCA AATCAAGGTCACAACCGCAATTGACACGACCCTCATTGGAAACTCTTACCCTCCATCACAAGGATCCTTCAGGAGTGATG TGAGGTCCTACCTTGACCCTTTCATAGGCTACTTGGTCTATGCAGGAGCACCTCTACTTGTCAATGTGTACCCTTACTTC AGCCATATTGGTAAGTGGGGCATGTATATATCACAAAGAGTAACATATTTTTCAACTTAAACATCAAGACATTAGGTGTA TGAATCTCTTCACCGCCACACTGAACTAGGTTTAAAATGAGAGTATGTATTCACTTTATTTTTCACCATATATTGTTAAT TTTATTTTTACTCACACTTGAATTCTCCGCAGGTAACCCACGTGACGTTTCACTTTCCTACGCGCTCTTCACATCCCCAA ACATCGTCGCACAGGATGGCCAATACGGGTACCAGAACCTGTTTGATGCAATGCTTGACGCAGTTCATGCAGCAATTGAT AACACCAAGATTGGTTATGTGGAGGTTGTTGTGTCTGAGAGCGGGTGGCCTTCCGATGGAGGCTCCGCCACGTCATATGA CAACGCGAGAATCTACCTTGATAATTTGATTCGTCACGTTGGTAGAGGTACTCCGAGGAGGCCAAACAAGCCTACAGAGA CTTACATTTTTGCCATGTTTGATGAGAATCAGAAGAGCCCTGAATATGAGAAGCATTTTGGGTTGTTCTCTGCTAACAAA CAAAAGAAGTATCCATTTGGATTTGGTGGAGAAAGGAGATGGGGAGTTTTGGGTGATGAGTTCAATGCAACCTCCACCGT TTCCCTTAAGAGTGACATGTAA
CDS sequence (LotjaGi6g1v0257600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGGCAACAACCTCCCATCGGCAAACGAAGTTGTTGCTCTTTACAAATCAAATAACATCCGGAGAATGCGCCTCTA TGATCCAAACCAAGCAGCCCTCCAAGCCCTTCGAGACTCCGGTATCGAGCTCATCCTCGGTGTTCCCAACTCCGACCTCC AAAGCCTCGCCACCAACGCCGACAACGCACGCAACTGGGTGCAGAGAAACGTCCTCAACTTCTGGCCAAGCGTTAGGATC AAGTACATCGCGGTCGGCAATGAAGTGAGCCCTGTCGGAGGCGCCCCAACCCAATGGATGGCACAATATGTTCTCCCTGC CACCCAAAACATATACCAAGCCATAAGAGCACAGGGTCTCCATGACCAAATCAAGGTCACAACCGCAATTGACACGACCC TCATTGGAAACTCTTACCCTCCATCACAAGGATCCTTCAGGAGTGATGTGAGGTCCTACCTTGACCCTTTCATAGGCTAC TTGGTCTATGCAGGAGCACCTCTACTTGTCAATGTGTACCCTTACTTCAGCCATATTGGTAACCCACGTGACGTTTCACT TTCCTACGCGCTCTTCACATCCCCAAACATCGTCGCACAGGATGGCCAATACGGGTACCAGAACCTGTTTGATGCAATGC TTGACGCAGTTCATGCAGCAATTGATAACACCAAGATTGGTTATGTGGAGGTTGTTGTGTCTGAGAGCGGGTGGCCTTCC GATGGAGGCTCCGCCACGTCATATGACAACGCGAGAATCTACCTTGATAATTTGATTCGTCACGTTGGTAGAGGTACTCC GAGGAGGCCAAACAAGCCTACAGAGACTTACATTTTTGCCATGTTTGATGAGAATCAGAAGAGCCCTGAATATGAGAAGC ATTTTGGGTTGTTCTCTGCTAACAAACAAAAGAAGTATCCATTTGGATTTGGTGGAGAAAGGAGATGGGGAGTTTTGGGT GATGAGTTCAATGCAACCTCCACCGTTTCCCTTAAGAGTGACATGTAA
Protein sequence (LotjaGi6g1v0257600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMGNNLPSANEVVALYKSNNIRRMRLYDPNQAALQALRDSGIELILGVPNSDLQSLATNADNARNWVQRNVLNFWPSVRI KYIAVGNEVSPVGGAPTQWMAQYVLPATQNIYQAIRAQGLHDQIKVTTAIDTTLIGNSYPPSQGSFRSDVRSYLDPFIGY LVYAGAPLLVNVYPYFSHIGNPRDVSLSYALFTSPNIVAQDGQYGYQNLFDAMLDAVHAAIDNTKIGYVEVVVSESGWPS DGGSATSYDNARIYLDNLIRHVGRGTPRRPNKPTETYIFAMFDENQKSPEYEKHFGLFSANKQKKYPFGFGGERRWGVLG DEFNATSTVSLKSDM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 311 | 311 | 1.1E-129 | – | |
| PANTHER | 1 | 308 | 308 | 1.5E-136 | – | |
| PANTHER | 1 | 308 | 308 | 1.5E-136 | – | |
| Pfam | 1 | 308 | 308 | 8.4E-112 | ||
| SUPERFAMILY | 2 | 308 | 307 | 1.09E-92 | ||
| ProSitePatterns | 229 | 242 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0257600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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