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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0258100 |
| Transcript ID | LotjaGi6g1v0258100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nicotianamine synthase; TAIR: AT5G04950.1 nicotianamine synthase 1; Swiss-Prot: sp|Q9XGI7|NAS_SOLLC Nicotianamine synthase; TrEMBL-Plants: tr|I3SNB0|I3SNB0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0258100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57094499..57095861) extracted from Lotus japonicus Gifu genome v1.2.
GCACCAACTTGAAAAATGGTCATAGCCTCGAAAGTCTAAACTCAACAGTCCTACACTGCACTTATAAATTAGCATTGAAT TGTAATATTTGAAACTTGAATTCAAGGGTGAGAACCTACCTACTCCTACTAATTAACCTCCCATTGTGCAAATGGAGAAC CAGAAGGAGGTGATTGTGGGAAAGGTATGTGAAATCTATGCCAAAATCTCTAAGTTAGAAAATCTCAATCCTTCAAACCA TGTCAATGAACTCTTCACCCAACTTGTTACCACTTGCACTACCCATTGTGAACTAGATGTTACTTTGCTTTCCCAAGAAG TTAAAGAAACTATAGCTAAGCTAATTAAGCTTTGTGGGAAAGCAGAGGGACTTCTTGAAAGCCATTACTCTGCTATCATA GGATCTCATGAGAATCCCTTAAACCACATCAAAAGCTTCCCTTACTACTCCAATTACCTCAAACTTAGCCATTTAGAATT CACCATGCTGACCTCACACTGCACTCAAGTTCCTTCCCAACTTGCTTTCATTGGCTCAGGTCCCCTTCCTCTCACCTCAA TCATGCTAGCAACCTTTTACATGAAAAACACATGCTTCCACAACTATGACATGGATCCATCTGCAAATGCTAAAGCTTAT GATTTGGTCTCATCAGATCCTGACTTGTCAAAAAGAATGTTCTTCCACACTACTGATATTGCACATGTTTCAAATGCTCT TAAGGAGTATAATGTTGTGTTTCTGGCTGCACTTGTTGGCATGGACAAGAAGGGGAAAGAAAGTGTCATCAATCACTTGG CGAAACACATGGCTCCTGGTGCTGTTTTGGTTCTGAGGAGTGCACATGGAGCTCGAGCGTTTCTGTATCCGGTTGTTGAT CCTTCTGATCTCAAAGGTTTTGAGGTTCTGTCAGTTTTTCACCCAACTGATGAGGTTATAAACTCTGTTATTGTTGCAAG GAAGCATTCGGTGAATCCAGGGATTTTACTATCTAGCAAATGTCATGAATTGGCTGCTGAAGGTTTTAACACGTTGAACC ATAGGAATGTGATTGATGAGTTGAGTTTGACCATTGATGAGCATGCTTAATTGATTCTTGATTATGCATGTTAGTTATGA TTTATGCCATGCTATGAGCAGGCTTGGTTCTTATGTTTGATTCCTGTTGTTGTTGAATGATAAAAAAGCTAATTTTCTAC TGAGGGAGGGACCCCGTTGTTGTTCCAAACAATTTGTAGGCAATTTTCTAGCACCGCAGTTAATTATGAATGCAATTTCG CAGCTAATTTTCTAGCTCCGAGACAAAATTTCGTAGCTAATTTCGCAGTTAATTATGAATGCAAGCAATTTAACAGGTTC TCC
CDS sequence (LotjaGi6g1v0258100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAACCAGAAGGAGGTGATTGTGGGAAAGGTATGTGAAATCTATGCCAAAATCTCTAAGTTAGAAAATCTCAATCC TTCAAACCATGTCAATGAACTCTTCACCCAACTTGTTACCACTTGCACTACCCATTGTGAACTAGATGTTACTTTGCTTT CCCAAGAAGTTAAAGAAACTATAGCTAAGCTAATTAAGCTTTGTGGGAAAGCAGAGGGACTTCTTGAAAGCCATTACTCT GCTATCATAGGATCTCATGAGAATCCCTTAAACCACATCAAAAGCTTCCCTTACTACTCCAATTACCTCAAACTTAGCCA TTTAGAATTCACCATGCTGACCTCACACTGCACTCAAGTTCCTTCCCAACTTGCTTTCATTGGCTCAGGTCCCCTTCCTC TCACCTCAATCATGCTAGCAACCTTTTACATGAAAAACACATGCTTCCACAACTATGACATGGATCCATCTGCAAATGCT AAAGCTTATGATTTGGTCTCATCAGATCCTGACTTGTCAAAAAGAATGTTCTTCCACACTACTGATATTGCACATGTTTC AAATGCTCTTAAGGAGTATAATGTTGTGTTTCTGGCTGCACTTGTTGGCATGGACAAGAAGGGGAAAGAAAGTGTCATCA ATCACTTGGCGAAACACATGGCTCCTGGTGCTGTTTTGGTTCTGAGGAGTGCACATGGAGCTCGAGCGTTTCTGTATCCG GTTGTTGATCCTTCTGATCTCAAAGGTTTTGAGGTTCTGTCAGTTTTTCACCCAACTGATGAGGTTATAAACTCTGTTAT TGTTGCAAGGAAGCATTCGGTGAATCCAGGGATTTTACTATCTAGCAAATGTCATGAATTGGCTGCTGAAGGTTTTAACA CGTTGAACCATAGGAATGTGATTGATGAGTTGAGTTTGACCATTGATGAGCATGCTTAA
Protein sequence (LotjaGi6g1v0258100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENQKEVIVGKVCEIYAKISKLENLNPSNHVNELFTQLVTTCTTHCELDVTLLSQEVKETIAKLIKLCGKAEGLLESHYS AIIGSHENPLNHIKSFPYYSNYLKLSHLEFTMLTSHCTQVPSQLAFIGSGPLPLTSIMLATFYMKNTCFHNYDMDPSANA KAYDLVSSDPDLSKRMFFHTTDIAHVSNALKEYNVVFLAALVGMDKKGKESVINHLAKHMAPGAVLVLRSAHGARAFLYP VVDPSDLKGFEVLSVFHPTDEVINSVIVARKHSVNPGILLSSKCHELAAEGFNTLNHRNVIDELSLTIDEHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 306 | 306 | 3.4E-165 | – | |
| ProSiteProfiles | 1 | 276 | 276 | 53.327 | ||
| PANTHER | 1 | 306 | 306 | 3.4E-165 | ||
| Pfam | 2 | 274 | 273 | 2.8E-127 | ||
| Gene3D | 7 | 273 | 267 | 1.5E-65 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nicotianamine synthase activity | Catalysis of the reaction: 3 S-adenosyl-L-methionine(1+) = 3 S-methyl-5'-thioadenosine + 3 H(+) + nicotianamine. | ||
| Biological process | Nicotianamine biosynthetic process | The chemical reactions and pathways resulting in the formation of nicotianamine, 2(S),3'2(S),3''(S)-N-(N-(3-amino-3-carboxypropyl)-3-amino-3-carboxypropyl)-azetidine-2-carboxylic acid. |
Expression pattern of LotjaGi6g1v0258100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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