Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0262700 |
| Transcript ID | LotjaGi6g1v0262700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein phosphatase 2C-like protein; TAIR: AT1G48040.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q9LNF4|P2C13_ARATH Probable protein phosphatase 2C 13; TrEMBL-Plants: tr|G3ECQ8|G3ECQ8_SOYBN Rfls10 protein; Found in the gene: LotjaGi6g1v0262700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57619063..57620269) extracted from Lotus japonicus Gifu genome v1.2.
TTGATCGGTGTGGATTCATCTGTGAATGATATGAACTGGGTTTGATGATTTTGAATGTGATCTTTTTTTTTGCTGTTAGA GATTTGGGGATGAATAGATTCTACTATGGTGTGGTTACTGGGGTTTTGCAATCTAGCTTTTTGAATTGAGTGTTTCCATA ATTTGTTTATTTGTTTGATCAGATTCTTCTTGTTGTGGTGATCTGATTTTTGTTTTCTTCTGTATATTACAGGCTGTGAG TTGCACTGCTCCGGCGGCTATGAAGTTTACCCCAAAAGTTCGTTCTGGTAGCTGTACTGATATTGGACCGAGGGGGTCTA TGGATGATGAGCACATTCAAATAGATGATCTAGCTGCCCATCTTGGATTTGTGTTCAAGTATGCTATACCGAGTGCTTTT TATGCGGTTTTTGATGGTCATGGAGGGCCTGATGCAGCTGCTTTTGTTAAGGAGAATGCTATGAGATTGTTTTTTGAAGA TGCTGATATGTTACAATCATATGATGCTGATGCGGTTTCTCTGAAGAGGTTGGAAGATTCTCATCGGAGAGCTTTTTTAG TTGCAGATCATGCCTTGGCTGATGAAAAGTGTGTTAGCAGTTCCTGCGGGACAACAGCGTTAACTGCACTTATACTTGGA AGGCATTTGCTGGTTGCGAACGCTGGTGATTGTCGAGCTGTTCTTTGTCGGCGAGGAGTTGCTGTTCAGATGACTGAAGA CCACAGACCTAGTTATTTACCTGAACGCAGGAGAGTGGAGGAGTTAGGTGGTTTTATTGATGATGGGTATCTCAATGGCT ATCTTTCAGTCACTCGTGCCCTTGGGGATTGGGACTTGAAACTTCCACTTGGTTCTGCGTCGCCTCTTATTGCTGAGCCA GATGTTAAAGTGGCCACATTGACAGAGGATGATGAGTTTTTGATCATTGGGTGTGATGGGATCTGGGATGTAATGTCATG CCAGGATGCAGTTAGTCTTGTACGGCGTGGATTAAGGAGGCATGATGACCCACAGCAATGTGCCAGAGAGCTAGTCAAGG AAGCATTGCGCCTACACACATCAGATAATCTCACTGTGATTGTTATTTGCTTGTCATCTGTTGAAACCATTGTTGAATCA TGTCCACCACAAAGGCGAAGATTCAGAGCTTGCTCTCTGTCTGAAGAGGCCCGAAATAGATTGAGGAGTTTGCTAGAGGG AAACTGA
CDS sequence (LotjaGi6g1v0262700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTTACCCCAAAAGTTCGTTCTGGTAGCTGTACTGATATTGGACCGAGGGGGTCTATGGATGATGAGCACATTCA AATAGATGATCTAGCTGCCCATCTTGGATTTGTGTTCAAGTATGCTATACCGAGTGCTTTTTATGCGGTTTTTGATGGTC ATGGAGGGCCTGATGCAGCTGCTTTTGTTAAGGAGAATGCTATGAGATTGTTTTTTGAAGATGCTGATATGTTACAATCA TATGATGCTGATGCGGTTTCTCTGAAGAGGTTGGAAGATTCTCATCGGAGAGCTTTTTTAGTTGCAGATCATGCCTTGGC TGATGAAAAGTGTGTTAGCAGTTCCTGCGGGACAACAGCGTTAACTGCACTTATACTTGGAAGGCATTTGCTGGTTGCGA ACGCTGGTGATTGTCGAGCTGTTCTTTGTCGGCGAGGAGTTGCTGTTCAGATGACTGAAGACCACAGACCTAGTTATTTA CCTGAACGCAGGAGAGTGGAGGAGTTAGGTGGTTTTATTGATGATGGGTATCTCAATGGCTATCTTTCAGTCACTCGTGC CCTTGGGGATTGGGACTTGAAACTTCCACTTGGTTCTGCGTCGCCTCTTATTGCTGAGCCAGATGTTAAAGTGGCCACAT TGACAGAGGATGATGAGTTTTTGATCATTGGGTGTGATGGGATCTGGGATGTAATGTCATGCCAGGATGCAGTTAGTCTT GTACGGCGTGGATTAAGGAGGCATGATGACCCACAGCAATGTGCCAGAGAGCTAGTCAAGGAAGCATTGCGCCTACACAC ATCAGATAATCTCACTGTGATTGTTATTTGCTTGTCATCTGTTGAAACCATTGTTGAATCATGTCCACCACAAAGGCGAA GATTCAGAGCTTGCTCTCTGTCTGAAGAGGCCCGAAATAGATTGAGGAGTTTGCTAGAGGGAAACTGA
Protein sequence (LotjaGi6g1v0262700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFTPKVRSGSCTDIGPRGSMDDEHIQIDDLAAHLGFVFKYAIPSAFYAVFDGHGGPDAAAFVKENAMRLFFEDADMLQS YDADAVSLKRLEDSHRRAFLVADHALADEKCVSSSCGTTALTALILGRHLLVANAGDCRAVLCRRGVAVQMTEDHRPSYL PERRRVEELGGFIDDGYLNGYLSVTRALGDWDLKLPLGSASPLIAEPDVKVATLTEDDEFLIIGCDGIWDVMSCQDAVSL VRRGLRRHDDPQQCARELVKEALRLHTSDNLTVIVICLSSVETIVESCPPQRRRFRACSLSEEARNRLRSLLEGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 276 | 276 | 8.0E-81 | ||
| Gene3D | 2 | 286 | 285 | 2.0E-80 | ||
| SUPERFAMILY | 4 | 279 | 276 | 1.03E-75 | ||
| PANTHER | 4 | 295 | 292 | 1.0E-172 | ||
| PANTHER | 4 | 295 | 292 | 1.0E-172 | – | |
| CDD | 7 | 278 | 272 | 2.28807E-83 | ||
| ProSiteProfiles | 8 | 278 | 271 | 49.12 | ||
| Pfam | 18 | 270 | 253 | 1.0E-64 | ||
| SMART | 23 | 278 | 256 | 0.0015 | ||
| ProSitePatterns | 47 | 55 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. | ||
| Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. | ||
| Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi6g1v0262700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…