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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0263200 |
| Transcript ID | LotjaGi6g1v0263200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase; TAIR: AT1G48100.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100; TrEMBL-Plants: tr|I1MGA9|I1MGA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0263200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57687044..57692272) extracted from Lotus japonicus Gifu genome v1.2.
GAGTGCATGCTCAAACATTTCCATATCATTCATTTGAAATCTTTGCCTTCTATAAAATCCCCTTCACACTCATATTTTAG AAAGCAAGACATTAATTTTCTTAGACACAACTAGCTTGTTACAAGCTCCAAGTTAACTAAATTTGCATTGGATGGTTAGG GAAATTTCCTGAGCTCAAAGAAAAAATTGCACCCCTCATCATAAGGTGAAGTCACAAAGTCAAATTGTTTTTTCAATGTA ATTTATTGGTTCATTTAATAGTTATATTGATATAGAAAGATCTTAGTTTCTCTGAAGGTCACTTTCTATGTCATAGCTCT GTGTTTGTGTACCTAAATAATTACATATATTGATTTTCTTCAACCCCTTTATTATTGATCAAAATCATACAGGATTTTGA TTCCACCCGTGAATGTGTTAATTCTGTTGTCGCCTATCAAGTATAAAACACCTTCAATAAATTCAGGGCCACAACAACCC ACAATAAGCTAAACAACAACAAAGAGTCACGTTTTGGATTGCTTTTACATCAAGACCACATTAGCCCATTTTACACTTTT TTATATTCCTCTCAAGCCCCACATAGTACAGCTTCTTCCCCTCGCCAAACTACTATTATTTTTGGATATCAATATGTATG CAAACATATGTTAGCATGCATTTTAAAAAGAAAGCGTAACTCTTATGAATTGAGATGAAATTGTCATCAAGGCGTTGGAC TGTTAGTCTAGTGGTAGCTGGTAGGTGAGCTAGATATTTATAATGGTAACACAAGTTTGAATTCTGAAAAATCATTTGTT GGGAGGGACCGTCACAGTTCCTCGAACACATCAAAGAGTAACAAAAAAAAATTTGGGCGAAATTCACTTCACATGGTACT AAACCGGTATCTAAGCACACACGAATTGATCATTCTCTCATGTTTCTTGGTCTACATGTGCATTTGTGAGATGGAGATAA GAATTAAACAACCTAATATTTGGTTTAAAAATATGTAAATTGGTATGGACTGTGATATCTGCATTGCTTAAAATTAAGTG GAATGATTTGAGGATGTGGAAATTGAACATCTTAATTAGAGAATATTATTAATTGCTTAAGCTAGGGAGCAAGAGAAAAA GTTCCTTGTTTATAAAATGGAAAATTAAAAATTTGCTTAACACAAACAAGAAAAGTGCTGTGATTCATAATGCAAGTTCA GTTGTTTTTTGTCAAAGTTTAGGATTCCTATGATGCTTAGCTTTCTTCTTTTTTTCACCAGCTGCTACATTGTTGTTTAC AGACTAGTTCTAACTTATAGCTATACTTCACATGCAACATCTTAAACATTGTTGATTTTTCAATAGCTGCACGTGTCTGT TTTGGCCTCTTCCACGGTAAAACCCACATAGAAACATGTCATATAACCTGACAAAATATGCTACAAAACCAATTTGTTTC TCATAATTAATTTTAGTCATTTTCTTGGACAGTATATACACATGGCTTCTTAATGTCTTTATTGTATTTAAGTATGTGTT TAGCTTCAACCAAATTAGTCACTTTTTTTAAAGGGTCAAATACATTTTGTCTTGTTAATTACAACAAAATAACTTGCTGT TCTTGTGTTTCTTTTTCACCTAAGCTATCAATTATAGGCTTATTCTGTTACTCACAAAAGACACTTGAAATTAACTTATA TGCATAGTTAGTACAAGTAATCAGTTACAGCAATTTAAACACTTGAAGTGCAACCTTACTGTTAGTGAGGTCTAAGAAGT AAGAAGCGAACAAAAGGAACCATATCCTTGACCACAATACATTGAACTCTTACAATGAAAATAAGAAGCATGATCAGAAA AGTGAGGTTGGGAAACAGACACCATGCCAAGGTTACTACACAACATTGACCTTCAAAAGGGCCTTAAAAAACGTCTAACT GCTTCCTTGAGACACTGAAACCTTTAATCAACCAAAAGTCGACACGTGTCCGCCTCATGTTTGAGAATAATTTATTCCCA AACTACCAGATTTGTGAGTATATATAAGAACCTTTGCTTCACAATGGTCCTCACTAGGCCAATTTCCTTTGAATCGTCTG AAAGTTAGTTTTGAACTTTGTCAATAAAATTTCTGAAGCTTTAGCTTTTCAATTCTCTCTATCCACAGATATCATATCAT CTTTGAAGCAAGTTGTGGTTTCACGTTGTTACAAACATTTTTATTTCAGTGCCAAAATTCATCACCATGATTTTTATAAG AGGGTGTTTTATCCTATGGATTACTGTGATTCTTTTTATCCATGATTTGGATAATGTGGAAGGAAGAAACCACTATCACA AGAAGCAGAACAAAAAATCCCCTGCTCCTAAGTCCCCTGCTCATTCCCCTGCACCACCAAGTGACACTTCACCCCCTTCT TCCACTTCTCCGAGTGTTCCCTCAGACCCTTATCCGAATGATCCCGGGGATTCAGGCTGCGTATTCGACGTCATGTCCTT CGGGGCAGTTGGAGATGGTTCAGCTGATGACACGGCTGCATTCAGGGAAGCATGGAAAGCAGCTTGTGCAGTAGAGTCAG GGGTTGTTCTGGCTCCAGAAAACTACTGTTTTATGATCACTTCTACAATTTTTTCTGGTCCATGCAAGCCAGGACTTGTA TTTCAAGTAAGAATGCTTCTTCAATTTCCTACATCAAATGAACATGTAAAGTTTTTTTCCTACATTACTATATAGTTTAC TTACATGGTTCAAATTTATGCAGGTGGAAGGTACTCTCATGGCACCAGATGGACCAGATTCTTGGCCTAAAGCAGATAGC CGAAGTCAATGGCTTGTGTTTTATAGACTTGATCAATTCACTCTTAATGGGATAGGAATCATTGAAGGCAATGGGGAACA ATGGTGGGATCTTCCTTGCAAACCTCACAGGGTAATAATCATTTCAGTTTCACATAGCATGTGTTCAGAAGTTTCACATT AACCAGAAATAACACTGATACCATTACTAACTTTCTCCTCACTATTGATGTATTTTATTTGATGTTCAATTCAATCAAAC TAAATGCTAGCAAAAAAATGTCATTTCAGGGTCCAGATGGGAAAACTACATCAGGACCATGTGGGAGTCCAACAGTGAGT AAACTCTTCAAAATTCAGCTCAACCAGAACATAACTGTTTATACTTTATAATGTACTCTTTCTTCTTCTTTTTTCTGTTC TGAATTGTCTTAACAATGTTTCTTTCTTTGTTGATACTTGATAGATGATAAGGTTCTTCCTCAGCTCCAACTTGCTGATG AGGGGTGTGAAGATTCAAAACAGCCCCATGTTCCATGTGAAGTTTGATGGCTGCCAAGGAGTGCGGATCGACGAGGTGTC CATTTCTGCGCCGAAACTCAGCCCCAACACTGATGGAATCCACTTAGGAAACACGAAGGGTGTTTCGATTTACAACACCA TGATAAGCAATGGTATAGACTAAACTGCAATGTTTCACTTGCTCAATATGGCAAATCTGTTCTGTGTTAATTTCTTATGC GAAATGAGTAGTTTACTAGAACATAGTTTTTTCTTAACAGGTGATGATTGTGTTTCAATTGGACCCGGGTGCTCAGATGT GGACATTAATGGATTAACTTGTGCTCCCACACACGGAATTAGGTACTTTATTGCATAATCTCTCTTAATTTAGTTGAATT GGGTCGTTAACTACCAACTATCAATGATGACCAATATACAAATTAAATAAAAAACTAAAAACAAAGCCAAATGATGCTTG CTGTATAATATAATCATCTTTACTGTGATTCTAAAACAATTTCAAAAGGCAAAACTAATGAAATGTGAAAACTCAAAAGT TGGGTTATGAAATTGAAATGTCTCAACCTTCAAATGAAAAGAAGGTCACAAGAGTTATTTTCTTCTTTTAGTGATCTATA TAACTAAATTACTTTAACAGTTGGAAGTTGGAACAGTTCAAATAGCAAATCATTAATATTACAGTTGTTTCTACTCTTCA CTTCTCTGTCCCTCCATGACTCAAGAGTAGCAATTAGAAATGTCAAAGCTAATTTGGAACCTTTAGTGTACCGAGTTTGT ATGGGATTGAACTCTTCTATTTCCGGAATGTGTACTAATTTTGTCCCACTGATAAAATTTTAACATGTAAGTTAAAAACC ATCATGTAAGTTTGTAACCGTCTCACTCATGTCTTTTTTAATTGACATAGCGAGATTTCGTTGATGGGACAGGAAATTCA GACATCATTTAATAACAGAAGACCTTATTCGTTTGTATGATATGTCGGCATTTTTCACTAAAAGTGTGGTAATTTGTGCA GCATTGGAAGCCTTGGAGTGGACAACTCACATGCTTGTGTCTCCAACATAACTGTCAGAAATTCTGTGATAAAGGAATCA GACAATGGGCTGAGGATTAAGACATGGCAAGGAGGTACAGGTTCAGTGACAAACTTGAGATTTGAGAACATCCAAATGGA GAATGTGAGGAACTGCATCAACATAGACCAGTACTACTGCCTGACCAAGGAGTGCAGGAACCAAACATCAGCAGTACATG TAAATGATGTGTCGTACATTAACATAAAGGGGACTTATGATGTGAGAACACCTCCTATACACTTTGCTTGCAGTGACAGT GTTGCGTGCACAAACATAACACTTTCAGATGTAGAGCTTTTGCCATATGAAGGGGAGTTACTGGAGGATTCATTTTGCTG GAATGCTTATGGGACGCAAGAGACAATAACAGTTCCTCCAATTGATTGCTTAAGGGAAGGTGAACCTGAGAGGGTTATAG AGCTCTCCCAATATGAATGCAGTTAACATGTTACAATTACTTTGAAATTGTGGTTATAGAAGAAGGTAAGGTACATGTAT AGAGGCATTAATTAGTTATGATGGGGTATGTTTGTGGCTTATTATATGATACATTATTACTTGTTATTCGTTCCTATTTG GGGGATTCGCCCTATTGTGTGATGAGATATAGAATTTAGTCTATTTTTTGGGACCTACCTACATTGTAATAGCTTTAATT GGATATTATATAATAGATTTCATATATCAGCATAGCTTTCATATTTAAATGTAGTTTTTGCATCATGATCTTATTTGCAA ACATGAGATGGGGCACCCTTTATATGGAGAAATGAGAGATAAGAAAACACAGACTTACTCAATGTGGGACATGAACTTGA ACATAAGTTTTATGAATTCTATTTAGTGA
CDS sequence (LotjaGi6g1v0263200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTTTATAAGAGGGTGTTTTATCCTATGGATTACTGTGATTCTTTTTATCCATGATTTGGATAATGTGGAAGGAAG AAACCACTATCACAAGAAGCAGAACAAAAAATCCCCTGCTCCTAAGTCCCCTGCTCATTCCCCTGCACCACCAAGTGACA CTTCACCCCCTTCTTCCACTTCTCCGAGTGTTCCCTCAGACCCTTATCCGAATGATCCCGGGGATTCAGGCTGCGTATTC GACGTCATGTCCTTCGGGGCAGTTGGAGATGGTTCAGCTGATGACACGGCTGCATTCAGGGAAGCATGGAAAGCAGCTTG TGCAGTAGAGTCAGGGGTTGTTCTGGCTCCAGAAAACTACTGTTTTATGATCACTTCTACAATTTTTTCTGGTCCATGCA AGCCAGGACTTGTATTTCAAGTGGAAGGTACTCTCATGGCACCAGATGGACCAGATTCTTGGCCTAAAGCAGATAGCCGA AGTCAATGGCTTGTGTTTTATAGACTTGATCAATTCACTCTTAATGGGATAGGAATCATTGAAGGCAATGGGGAACAATG GTGGGATCTTCCTTGCAAACCTCACAGGGGTCCAGATGGGAAAACTACATCAGGACCATGTGGGAGTCCAACAATGATAA GGTTCTTCCTCAGCTCCAACTTGCTGATGAGGGGTGTGAAGATTCAAAACAGCCCCATGTTCCATGTGAAGTTTGATGGC TGCCAAGGAGTGCGGATCGACGAGGTGTCCATTTCTGCGCCGAAACTCAGCCCCAACACTGATGGAATCCACTTAGGAAA CACGAAGGGTGTTTCGATTTACAACACCATGATAAGCAATGGTGATGATTGTGTTTCAATTGGACCCGGGTGCTCAGATG TGGACATTAATGGATTAACTTGTGCTCCCACACACGGAATTAGCATTGGAAGCCTTGGAGTGGACAACTCACATGCTTGT GTCTCCAACATAACTGTCAGAAATTCTGTGATAAAGGAATCAGACAATGGGCTGAGGATTAAGACATGGCAAGGAGGTAC AGGTTCAGTGACAAACTTGAGATTTGAGAACATCCAAATGGAGAATGTGAGGAACTGCATCAACATAGACCAGTACTACT GCCTGACCAAGGAGTGCAGGAACCAAACATCAGCAGTACATGTAAATGATGTGTCGTACATTAACATAAAGGGGACTTAT GATGTGAGAACACCTCCTATACACTTTGCTTGCAGTGACAGTGTTGCGTGCACAAACATAACACTTTCAGATGTAGAGCT TTTGCCATATGAAGGGGAGTTACTGGAGGATTCATTTTGCTGGAATGCTTATGGGACGCAAGAGACAATAACAGTTCCTC CAATTGATTGCTTAAGGGAAGGTGAACCTGAGAGGGTTATAGAGCTCTCCCAATATGAATGCAGTTAA
Protein sequence (LotjaGi6g1v0263200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIFIRGCFILWITVILFIHDLDNVEGRNHYHKKQNKKSPAPKSPAHSPAPPSDTSPPSSTSPSVPSDPYPNDPGDSGCVF DVMSFGAVGDGSADDTAAFREAWKAACAVESGVVLAPENYCFMITSTIFSGPCKPGLVFQVEGTLMAPDGPDSWPKADSR SQWLVFYRLDQFTLNGIGIIEGNGEQWWDLPCKPHRGPDGKTTSGPCGSPTMIRFFLSSNLLMRGVKIQNSPMFHVKFDG CQGVRIDEVSISAPKLSPNTDGIHLGNTKGVSIYNTMISNGDDCVSIGPGCSDVDINGLTCAPTHGISIGSLGVDNSHAC VSNITVRNSVIKESDNGLRIKTWQGGTGSVTNLRFENIQMENVRNCINIDQYYCLTKECRNQTSAVHVNDVSYINIKGTY DVRTPPIHFACSDSVACTNITLSDVELLPYEGELLEDSFCWNAYGTQETITVPPIDCLREGEPERVIELSQYECS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 5 | 466 | 462 | 6.0E-266 | – | |
| PANTHER | 5 | 466 | 462 | 6.0E-266 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 26 | 8 | - | – | |
| Phobius | 27 | 475 | 449 | - | – | |
| MobiDBLite | 29 | 70 | 42 | - | – | |
| MobiDBLite | 43 | 69 | 27 | - | – | |
| Gene3D | 72 | 465 | 394 | 1.0E-118 | ||
| SUPERFAMILY | 77 | 473 | 397 | 1.37E-124 | ||
| Pfam | 122 | 427 | 306 | 9.4E-84 | ||
| SMART | 241 | 267 | 27 | 1100.0 | ||
| SMART | 268 | 289 | 22 | 740.0 | ||
| SMART | 321 | 342 | 22 | 8.4 | ||
| SMART | 350 | 371 | 22 | 240.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0263200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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