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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0264100 |
| Transcript ID | LotjaGi6g1v0264100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribose-5-phosphate isomerase A; TAIR: AT5G44520.2 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q9FI13|RPI4_ARATH Probable ribose-5-phosphate isomerase 4, chloroplastic; TrEMBL-Plants: tr|A0A1J7HLQ2|A0A1J7HLQ2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0264100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57771779..57775859) extracted from Lotus japonicus Gifu genome v1.2.
GTCCTTAAAAGAAATTTTATTTTAAAAATCTCATGTGCGAATTTGCACTGGTGTAGACATATTGGTAGCCCCTTATCCAC TACCACAAAACATTTGATGAAATTGCAGAGGGAGAGTTGAACAGCAATGGCTTCAGCTGCTTCATCTTCTTCGTTTTCCA CAAGGCTTCTTCTGCATTCACCCACAACTCTACTGGGCAGAAGAAGAAGAAGGTCCAATGTTCTGAGGATGGTGACTCGC TCATGTCTCGATGACAGCTCTGCTCTGCTCCGAGCAGCTCAATACACTGTATGAATTTATCATTCTCATTGTCTCCAGCT TCGAATTTTGTGTTTTCACTTTTCTGAGTGGCATCAATATCTTGTTTTTCATGCCAGTTTTATTCAGCAGCTTCAATGAT TATTTTGCTGTTAGATTTTTCATTTTTTGCAATCATTGTCAAAATCGTGTTTTTGTTATGTTTCCAACACCCCTTTTGGT TATTCTATGTGAATTAGTTGACAAAATAGGGACATGATGTACTTAATGGTGATTCTCAGGGTCTGCACTCTGCAACTTTC ATGCAACTTTATGCTTATGTTAAAGAGGGTTTTCTGTTTAGTAAAAGTGTGTATGTTTGACACAAATCATAATCATATCT TTGTTATGTTTCAAATACTCATTCTTTGATGTTTGGTTTAATGGGTGATGAATGAATTTTGTAGATATGTGTTGTTTGGT AGGTGGATACATATGTGAAAAGTGGCATGGTTGTAGGATTGGGGTCTGGTCATGCTTCTGGTATGGCCATTCAGCATTTG GGTCGCCAGCTTCGTACGGGTAACTTGAAGGATATTGTTGGGACTCCCATGTGAGCTCTGCCTCCTTATGTTTCTTCTTC CCATCCTTTCACTTAAATTACCATGCTATTTGTTTTATTTGAAAAAAAATAGTACTATTTAATGGAAGCTCAACTATCCA TTTCTGAAATTTGACTGCTAATGTGATCGGAATTTCTTTATACAATGCAACCAAGGATCATTCTTTTTGTAAAGCCATAT TACTTCCAATTTGTAGGTCAAGATTCAAGAAGTAAATTCCATCAAACCACTTGACCTTGATGCATTGGTTAATGCAGGTC TATTTCAAGTGCAAGTGAGGCAGCCAAGGCTGGGATTCCATTGGATACCTACCAAGACAGTTCTCAAGTGTGCAAACAAA ATAATCATCTTCTAGATTTTCCTTTAATGTTGAGTGTTTCTTGTTTTAGAGGGCACTTGGATGCTTGCCAGAAATTTTAG GAGAACATGAAGTCTTTCATGCTATCCCTGGTGAAAACTTTCCAGAAAAAAAGAAGTATCTGGCATAAATGCATGACTAA AGAAAAATCTTTTGATAAAATAAAATTAAAAAGGAAAAAATATCTTGATGTGTAAACTTAGGTGCCCTTTTATTTTATTT CGGATAGAACCTATTTCTTATTGTAGATTCATTTGCAATCGCTCTGATGTAGATTGATTTGGCATTTGATGATGCTGATG TTATAGAAGAAGGGACACTTGTTGGTATCATTGGGCGCCGGAAATTGCAAGGTGAAGAATCCATAATCCAGGAGAAGGTT AGTAGCTTTACCATTTTTTCTGACTTTATTTGTGAAGATCAGTTTTGATGTTTTAATCACTAATTTCCCTCTTTTTCCTT TTGTTTGCAGTCCATACTAAATGCTTCCAATAAACTTGTGTTCATTATCGAAGAAAACCAGTACAAACGTGGTCTGGAAG GTTCTATTCCAGTTTTAATTCAGTCTGTAAGCAGCTGTGCATATTATTAGCTTATTGATCCTTTCTTCTGTATATCTGTC TTCAATACTCAAAATTTTGCTTGCAGATCAACTGGATGGCAACTGCTGAAGAGATTGATGATATGTTTCTCGGTGATGCT GAGGTTCACTAAATCACTCTTTTTCTGAGATTTTCTTCATGTATGTAATAAAAAATTGTAAGAATTGATTGTTTGCTTTA CCAACTTAAATAGTGACAATGATATAAAGATCTCCATATTTGTTTCAAAGATAAGGGTATTTTGACTTTGTTTGTATAAC TACTTTACTAACAGAAAAATGATGCTTATAAGGAGATGAGCGAAATAGGAAAAGAGAGAAAATGAAAGATGTAATGGGAA AGCAATAGAGAGAGGTGGACAAAATGAAGTGTGGAAAAATCATAGTTGTTATTTAAAGATTTAGGATTTAGGTATGACTT ATGATTCATAACAACCGAAGCCTTCTCTCACTAATTAAGGTTGAATCAAATAACCCCACTATTATTTCCATAACCAAATC TTTGTAGAGGAAATTTAATTCTAGCTCCTTTCTAATGGTTTCACAAAGTCAACTTGGTCTAGCTATATCCCTAGGTTTTG TTGGCTTCTGAGTTCTGACCAGATGACAAAATATAGTTATTTAGCTTGGTTTATATTGTGGACTTATTGAGGGATTGGAG AGTTCTTTCGAGCCAATGCACTCCTTGTTTGTGTCCTGTATTTCATTCTTACTTTTTAGTTAATCTAGAGGAAGATTTCT TATGATCTTATATTTCTCTTCATTATCTTAATTATTAAATGAAAAACTGCATATTCCAATTATATTGACTGTTAAACTTT GTATAAGGTCTGGAGAAGACCGTCTATTGGACAAGCTGGTCCACTTGGAGGTAATTTCCCACTAGTCACCAGAGAAGGAC ATAATGTTCTTGATGTTATCTTTACATCTCCAATAGTAAGCCTTGGTAAGTTCTATAAGTTCATGATGCATTTCTAGTGC CTAGTCTCAGTATCTGGGCAGATCCATTCATTGACTTAGTGTTGCTTGCAGCTGAAGTAGCAAAAAGCCTGAACAAAGTT GATGGTGTTGTGGACCATGGTGTCATATCTAAAATACCGTTAGTTTTTTTCTCTATTTACTTCTACTTTATACTTCTCTT ATAAGTAGTTGACTCTCTCACTGATTGAAATACATAAGATAGCTATTGAATCAAAAGGTTTGATAGAGCTTTAAGTATCA GGTGTACTTGAAATGATTGTTGGAAGGATTTTCAGTTAAACCTGATGTGTTTTTAGGGCTTCCAAAATTCTTTATCTAGT GCCCTATCTTAAAATGTTATTAAAAATTGTTTAGAACCATCAAGAAGGTATACAACACATAAAACATCCAATGATCCACT CTAATACTTTCATTTATCTTTAACAGTCTGTCAGAGTTCAATGGAAAAGAAGTGCTTGACAAATGCTTCAAATAATGTTA CAAGCTTAACTATAGCCAGTCCAGATCTTCTTCATTTTAGTTATTTTTTCTGTTGTTTTATTACCTCCAATGGGCAAAAA GAGATGCATAGGTTATAAATTTAATTTCTTTTATTTAGAGCTGCAGGGTGTACTTCAAATGCATCTATTTATTTAGCCAC CATAAACAACTTTTTCTGCTAAGTTATTGCATTGATTCTAGTAATATTCTTCCCAGAAATGAAAGAAGCAGAGTGAAGTT GTTTGTTTTCAATGGGAACTTACTTCTATGATTTTGTAATGCAGATGCACGGTGGTAATTGCTTCTCAGAAGGAGCTGAA CATTTTGGACAAATTGACAGCAGACATAGTGGGCTAGCCTTCAGTTCTTATAGCTGTCACATGCAAATGAATGTAAATGC AGTTGTTCTATTTTTTTCTTCATGTTTTCTTTTGGAAAAAGCTCCTCTAAAGTAAGTTTGAATATGTAGAATGAGCATGT AACCTTTAACATGGACTGACTTGCACGCTTCTAAAGATACATATAAAGCATTGCAAATTGCAATCCTCCTTAGCCATGTG TATATAGGAACCATGTTCAACCCGCGGATGCAAAACATTAAAAAGAAGAGAACAATCTGTCTCAAATACAACCATCCTAA AGTCTCATCTCGGCTCTCATCTCGCACCACGCAACCCATACCTACATTGTCGTTCTTTGAGAAAGAAGCGTCCATATTTA ACTTCGCGCCAACCAAGTTCCATAGCGTCCGCAAACCCACTGCAGTAGCAGCGTTGAAATTTAACTTGAGCCAACCAGTT T
CDS sequence (LotjaGi6g1v0264100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAGCTGCTTCATCTTCTTCGTTTTCCACAAGGCTTCTTCTGCATTCACCCACAACTCTACTGGGCAGAAGAAG AAGAAGGTCCAATGTTCTGAGGATGGTGACTCGCTCATGTCTCGATGACAGCTCTGCTCTGCTCCGAGCAGCTCAATACA CTGTGGATACATATGTGAAAAGTGGCATGGTTGTAGGATTGGGGTCTGGTCATGCTTCTGGTATGGCCATTCAGCATTTG GGTCGCCAGCTTCGTACGGGTAACTTGAAGGATATTGTTGGGACTCCCATGTCTATTTCAAGTGCAAGTGAGGCAGCCAA GGCTGGGATTCCATTGGATACCTACCAAGACAGTTCTCAAATTGATTTGGCATTTGATGATGCTGATGTTATAGAAGAAG GGACACTTGTTGGTATCATTGGGCGCCGGAAATTGCAAGGTGAAGAATCCATAATCCAGGAGAAGTCCATACTAAATGCT TCCAATAAACTTGTGTTCATTATCGAAGAAAACCAGTACAAACGTGGTCTGGAAGGTTCTATTCCAGTTTTAATTCAGTC TATCAACTGGATGGCAACTGCTGAAGAGATTGATGATATGTTTCTCGGTGATGCTGAGGTCTGGAGAAGACCGTCTATTG GACAAGCTGGTCCACTTGGAGGTAATTTCCCACTAGTCACCAGAGAAGGACATAATGTTCTTGATGTTATCTTTACATCT CCAATAGTAAGCCTTGCTGAAGTAGCAAAAAGCCTGAACAAAGTTGATGGTGTTGTGGACCATGGTGTCATATCTAAAAT ACCATGCACGGTGGTAATTGCTTCTCAGAAGGAGCTGAACATTTTGGACAAATTGACAGCAGACATAGTGGGCTAG
Protein sequence (LotjaGi6g1v0264100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASAASSSSFSTRLLLHSPTTLLGRRRRRSNVLRMVTRSCLDDSSALLRAAQYTVDTYVKSGMVVGLGSGHASGMAIQHL GRQLRTGNLKDIVGTPMSISSASEAAKAGIPLDTYQDSSQIDLAFDDADVIEEGTLVGIIGRRKLQGEESIIQEKSILNA SNKLVFIIEENQYKRGLEGSIPVLIQSINWMATAEEIDDMFLGDAEVWRRPSIGQAGPLGGNFPLVTREGHNVLDVIFTS PIVSLAEVAKSLNKVDGVVDHGVISKIPCTVVIASQKELNILDKLTADIVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 25 | 288 | 264 | 4.5E-131 | – | |
| PANTHER | 25 | 288 | 264 | 4.5E-131 | – | |
| CDD | 49 | 275 | 227 | 4.07646E-53 | ||
| SUPERFAMILY | 49 | 190 | 142 | 1.0E-15 | ||
| Gene3D | 50 | 277 | 228 | 2.1E-54 | – | |
| Pfam | 94 | 277 | 184 | 3.8E-35 | ||
| Gene3D | 176 | 262 | 87 | 2.1E-54 | – | |
| SUPERFAMILY | 180 | 263 | 84 | 1.44E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribose-5-phosphate isomerase activity | Catalysis of the reaction: D-ribose 5-phosphate = D-ribulose 5-phosphate. | ||
| Biological process | Pentose-phosphate shunt, non-oxidative branch | The branch of the pentose-phosphate shunt which does not involve oxidation reactions. It comprises a series of sugar phosphate interconversions, starting with ribulose 5-P and producing fructose 6-P and glyceraldehyde 3-P. |
Expression pattern of LotjaGi6g1v0264100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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