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LotjaGi6g1v0264300.1

Overview

Field Value
Gene ID LotjaGi6g1v0264300
Transcript ID LotjaGi6g1v0264300.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|A0A072VG20|A0A072VG20_MEDTR UDP-D-glucose/UDP-D-galactose 4-epimerase; Found in the gene: LotjaGi6g1v0264300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:57781237..57787507) extracted from Lotus japonicus Gifu genome v1.2.

GGAAAGGTTACACATTGTTCAAATTCAAAGCATCTTTATCAAAAAATATCACAAAAGGGAATCACAAAAAACAAGAAAAA AAAAAGAAAAGAAAAATTTCAAGTCTACGATGTTGTTGTTGTTGTTCCTTTTGTGTTGCCGTCCTGTAACGCTTTGACAA CATGGACGCGGAGAGAAGTCTCCACCTATTAGAAGACAACCCCTTCTCTCACCATTTTCATTCTTCTCTCTTTCATTCTC TCTCACCATTCATTCATTCATTCATTCTACTCTGCACCTGCTCCCACTTTCCTCATTCTCTTTCCAACTCATCCTGGTTT CTGCTCAGATTCTGGTACTTTATTTTCCCTTTACAGGTTTTCTGACTTTCTTTCTTTTTAGCCTTCAAACGGTTAAAGTT ATACTCTTTTCCTCCTTACTAGATCTTATGCTCTTCTGGGTAGTTCTATGAAGTCATTTTTCAAAAGTATTTTCCGTTTT CAAGTTTCAAGTACAATTCTGTTATTTATTGCTCTATGTTTTGTGCTGTTTAAAGGTCTTTAATTCATTTTTTTCATGAC AAATTTGTTGTTTTTCTATGTATGGTTGGCCCTTGATGTTGTTAGGTGATTCTCTGATGTTTTCTTAGGCTTGGTTTTTG GTTGTTTATTAGTCAGTGATGCTGCAAGAGCAAAAATGATTTTTTTTGGGTTTTTGAATTGCTGGTTAGTAGTATTTTGG TATTTTTGGGATGATTGGATCTTGAAATTGCTTTGGTCTTCTGATTTGTTGTGTTTCTACTGTTTGGTATTTGTTGATTT TTTCAAGCTGATTTCTGATAGATGATGGATTCTCTGATGATGTTTGTTTTTGAAAACCTGGAAAGGGATTGGAATGTGAG TCTCTTTGGTTTGCTTTTCACTTTTTTCCCTTGTGTTTTCTACCTAGTGCAGTCTGACAGACCATTTATGTGCTTGTCGT TTACATTGTTGTTATTGTGAAATATGCAGGGGATAATCTTTAGTTTTTTTCTTTATGCTTACTTTCCATGTGGCATGATT TACTTCTTCTGGGGTTGTCTGGATGCATTTCTGAATCCTCTTTTTCTCACCACTCACCAGCTTTGTAGTTTTGAATTAAC TGGTGAATTGGCCGGTTCTTTTTTGTTTGCACAAGTTTTATGGTCTTTTTAGCTCTTTAGTATCTGAACTTTTCCAATCC ATTTTCCCATTTTCATTGTGGCCGTCAGGCCATTTTTTACCCTTCACCAATAGAACTTCAGTCTTTTTTACCCTTAACAA TGTCATCCTCGAGTTTGTTTTTTGTTGTGCTGGTTTTTTATTTTAAACTCCTTTAAGGGTTTTTTCACTCCAGAGTGAAA GAAAAGAAAAACTTACATGGTCTGGTTTTCACTGCAGCATATCACTCAAGACCCCTCTGGGAGTGGAACTTGATGTGATC ATTGATATTGGGGAATAAGACCTTGTTGATTTTGCAAATGCTAAATTTTGCCAGGTCCAGAAGTCAGCCGAGGGCAACTA GAGCTATGTCATTAGGAGGTAAGGTTACTCTGTCAAATTTGAGCATATATGGTGGTTGACCAACTCTGTGTTTGTATTGA ATGAAGCTGGGGTAGTTAAAGCATCAATATCTCTGTGTTTATAGGATAGATTGGATGCAAGTATATGGCATGAGGTGTTC ATAAATTAATTAGTTGTTGATTTGTTTCATGTTGGTTGGGTTTCTAATTATAATTCATTAATATTTTACATTGAATTTTT AAGATATATTTTCACACTTATGCTTTCTGTCTTGTAGGCATGGACTATGTGGATCCAAAAAGGAAGGGCAATGTTGCTGG AAAAGTTTTTCTCGTTGCAGTATTAACGGCATTATGCATTTTGATAATCAAGAAATCTCCATCTTTTACTTCTCCTAGTC CGGTATTCCTTCAAATAGACAAACAAATATCATGGTCAACCATGCACATATATTTATATATTGTGCATGTCTATATATCT CTAGATTTTATTTACTAATGGATGTGGACATTGTGATATTTAATATCTTTGTACACATTACAAACTTGAAAGAGTTAGCC GGCTAAATATCCTATTAGACATATTAAAACAAATTTTATCAGTCGCTTCTTTTTAATCAATAGATGATTAGATAAATGAT TTTTATATTTTCTTATGCCATTTATAAGTTTACAGCATGATGCTTCCTTTTGTGGTGGTGGAATTTGATTGGAATTCAAT GCGATGGCTGTATGGAATTTTTCCGGGGGCGGGGGGGGGACTTCTCGGGACAGTTTTTGTAGTCTGTTCTTCCAGCTGAG TTAGATAAAACATCCGATGTATCTAAGTTTCTATCTTCTTTTCACGTTATGTAAATGTTTGAAGTAAAGCACTATGGACT ATTCTAATTTACGTCTTGTTGTTTGACAGATTTCTATGATAGGTCGGCTCTTATGGCCTTTGGCAGATATAAAAATTCTG TGTAGTTTCTTTGGCTGTTTGATTATTTTACTGCTCAGAGCCACCTTGATGTGTAGATGAATCATTGTTAGAGATGATGA GCTGTTTTTACTCTTTATTTATTCAAAGAATAATGAAACTTTTCTATTTTAATTGGGTTTTCACCAGTGTTGTCAGAAGG ATACAAGAAAGAAAGAAAATAGATGAAAGAAAACTATAAGGATTTACAAGGGGGAATTTATAAAAGATAGGATGTATTAT TTTCAGTTGATAATTTTCTTTTTCTTTTTTTGCTATTATTTGGTATTCAAATCAACATCCATCTTACCCTTTTATTCAAT TTGGTGATTCTGCTTCTTCTTTTTTGGGCCAGTTTTCTGTCTCTGAACCAGGGGTCACTCATGTATTAGTGACAGGAGGT GCAGGCTACATCGGCTCACATGCTACCTTACGGCTACTGAAGGAGTCTTACCGTGTCACCATAGTAGTATGTCTCTTCAT ATTATTGAAAACTTCTCTGACAAAATAAATGCACGGCACTCATCAGTCTGACATTTTCTCCCTTGCAGGATAATCTGTCA CGAGGAAATTTAGGTGCCGTCAGGGTTCTTCAAAACCTATTTCCAGAACCTGGAAGGCTTCAATTTATACATGCTGACTT GGGAGATTCGAAATCTGTATCCTTGTAATATTTCCTTGTTGCCTGAAATAATTTGGTGTTGAATGTTAACTTTGATTGAA GCATAGTGTTAGAGAATGCCCCAGAGAAATTGTGTACTTGACTGGTTATCAGGTTAATAAAATCTTTTCAGAGAATAAAT TTGATGCTGTGATGCACTTCGCTGCTGTTGCATATGTGGGAGAAAGCACACTTCACCCTCTTAAGTAAGTACTTGTAACT TTTATTGGGGACATTATTTCCAGTTGAACAATTTGTGGGAAGTAGTAGTATACAATTTGTGTGCATTTCTAATTTCCTCC ATAAGTAGCATGAACAACAGATTGGCTTTTTAGACACAAATTGAAATTCTCAATTTTATATGAATTCTCTTTCAAGGTTT GTTTAACTAAGGTCTTGGTTTTGTGGATTCAATATGCTCTGCCTTTGATAATATACCTCTCTTAGTTAAGGTTGACATTC CTATCATTACCTTCATAGTGGTTTACTCAAAAGTTATCTAGGCCCAAGGAAGTTCCAAATAAAAAAAGTACATGATTGTG AAATGAATGTTAAGGTTGGCAAAATCAAAATTGATTCTAAGTCTAGATTATTTGGGATAAAGACCTAAATTTGTTTTATG GGATTATGTCTATATGTTTTATCTACTATGACTTATTTTAATTAGATTTAGCTGAGATGGATCAGTGTTAAAATTCATCG ATTTCAATTCTACTTTTTTATGTTGTATAACTTGTTTGTCAGGTATTATCACAATATTACATCAAATACCTTGTTGGTAT TGGAGTCTATGGCTAAATATGGTGTGAAGACGTTGATATATTCTAGTACATGTGCAACATACGGGGAACCGGAAAAGATG CCCATTACAGAAGAAACGGAACAGGTGTGAAATATTCTAAGTGTGACTGAATGTGAACTATAGTTGAGAACTTTCGTTTT TAACTACAGTCTATGTCTAATGTTTATTTGGTTACTTTAATGAACATTGAAACCTATGTTAAATTGATATTCTTCAATTT CAGAAACCAATTAATCCATATGGAAAAGCCAAGAAGATGGCAGAAGATATCATCCTTGATTTTTCTAAAAATTCTAAGAT GGCCGTAATGATTCTGAGGTTTGTACTTTGCATTTAAGTTATTAGTGATTTCTCCAATGTTTCAAATAGCTTTTTTTTAT GTCTTATTCATGTGCCCTTTGTTTCTTAAGTTATTAGTAATTCTGAACATATCTTACATGTAAGGAAACCTTGCAACAAG TGTTCCACGGTTTAAGTCAAATGCATTTTGTGATTTTTATTTTCTTTGTTTTTTGGCATATAGATGTTATGAATCCTTAT TATTAATGCAGACTTCTCATAATCTGCTATTATATATGACATTTTCTTCTGGGAAGGTTTGATTTGAAGGTGACCTAGAC ATGCACCTTCATGTGACAAAAATCTTTATTGCCATGTACTGATAGGAAAAGAAGTATCAGTACTTTTGGATTTCATAACA TAAGTAATTGTTAATTTCAAGTTAATAATTCCTACTATCTATGGTTTGTGATTATTGATAACTTTTCTTTGGGGAACATT CAGATATTTCAATGTGATTGGATCAGACCCTGAGGGCAGATTAGGTGAAGCACCGAGACCTGAACTTCGAGAGCATGGTC GAATTTCAGGCGCTTGCTTTGATGCAGCTCGTGGCATTACATCTGGCTTAAAGGTATCCTGCTATTATAATTTTTACTTT ATTCTTGTGCTGTTTTATTTTATAGAGAAGCTTAAGCCATCTGATTTTCCATTATGTAGAATTCTTCTATATATTATAAT TTATTTCACTCTAGTCTGCTTTCACAGCCAACTTGAAAACCAGCCAAAAAATTGTTTCTGAACTAATATGCCGGTATATA ATGAATGTGTACTCATTGTATTTGTTGCCACAATTTGCAGGTTAAAGGAACAGACTATAACACCCCTGATGGAACATGCG TTCGAGATTATATTGATGTAACTGACCTGGTTGATGCTCACGTCAAAGCTCTTGAAAAGGCACAACCTGGTCAAGTTGGG ATCTACAATGTTGGCACTGGAAAAGGTAAGTTTAACAATTTGAATATAGCATACTTGGACCAGCTTCTCTTTCACCAGAA TCAATTCTGAAACCCGAAAGCTACCCACAGATTGATTCTGGCTTCAGAGTCAATTGTAGAAGTGTTTCCAAACTTGGACA TAGTCTATCCACATGTTTCATAGTTATCTCAAAAGTTCTCATAGTGGGGTTGTTTCCCAGGTAGATCAGTGAAGGAGTTT GTGGATGCTTGTAAAAAGGCCACAGGGGTGAACATCAAAGTAGACTTCCTTCCCCGCAGGCCCGGTGATTACGCTGAGGT TTATAGCGACCCGGCTAAGATCAGACGTGAACTGAATTGGACTGCACAACACACTGACCTTCAAAAGAGCATACAAGTTG CATGGAAATGGCAGAAATCGCGCCCTGATGGTTATGGTGTATCATCTGCAATCTGAAGTTTTCTGTGCTGCTCTCATACA TCATGGGGCTGAGGATTTTTTGGTTCTTAGGGAGTTAGTAGTTCATTCATTATACTTATATGTATTCAACATCTAATCAT TCAATAATATAATGCCTAGGCTCTGGTATAGTTTTCCTAGATCTTTTGATTCTTCCATTCTAAATAAACATAAGGCATTT ACCTCCCTCTGTATATGTTTTTTTGGTGGCTCTCTGCTTGATCAAGCCAATTAGAATTTGCTTATTTTGCAGACTTCAGG ACAGGTTGCAAAATTGATCCTGAAAGTTTTATTTTAAGACTTTCATCTTTCAATGAACATTATCAAATATCATTATTCCT ATTAGGTTTTTTATTTTTTGATACAAAAATTGAGGAAGTCCAAGTCTCTGTAGTCTGCAAAATAGCAAACTTTGGGGAAT AAGTTTCAAAATTTTGTATAAATTTTCTCAAAGTTAAGACTGAGAAATTCTTATGCGTGTCTCAATAATTTGGCACCAAG AGTCCTTTACATAAGTATGAATATGATTAGTTAAAAGAATAAAAATGAGGTATAGTCATCTCCAAAAATAATTTTGACAT GAATTTCATAATGTATTGTTATTATACACAT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0264300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTAAATTTTGCCAGGTCCAGAAGTCAGCCGAGGGCAACTAGAGCTATGTCATTAGGAGGCATGGACTATGTGGATCC AAAAAGGAAGGGCAATGTTGCTGGAAAAGTTTTTCTCGTTGCAGTATTAACGGCATTATGCATTTTGATAATCAAGAAAT CTCCATCTTTTACTTCTCCTAGTCCGTTTTCTGTCTCTGAACCAGGGGTCACTCATGTATTAGTGACAGGAGGTGCAGGC TACATCGGCTCACATGCTACCTTACGGCTACTGAAGGAGTCTTACCGTGTCACCATAGTAGATAATCTGTCACGAGGAAA TTTAGGTGCCGTCAGGGTTCTTCAAAACCTATTTCCAGAACCTGGAAGGCTTCAATTTATACATGCTGACTTGGGAGATT CGAAATCTGTTAATAAAATCTTTTCAGAGAATAAATTTGATGCTGTGATGCACTTCGCTGCTGTTGCATATGTGGGAGAA AGCACACTTCACCCTCTTAAGTATTATCACAATATTACATCAAATACCTTGTTGGTATTGGAGTCTATGGCTAAATATGG TGTGAAGACGTTGATATATTCTAGTACATGTGCAACATACGGGGAACCGGAAAAGATGCCCATTACAGAAGAAACGGAAC AGAAACCAATTAATCCATATGGAAAAGCCAAGAAGATGGCAGAAGATATCATCCTTGATTTTTCTAAAAATTCTAAGATG GCCGTAATGATTCTGAGATATTTCAATGTGATTGGATCAGACCCTGAGGGCAGATTAGGTGAAGCACCGAGACCTGAACT TCGAGAGCATGGTCGAATTTCAGGCGCTTGCTTTGATGCAGCTCGTGGCATTACATCTGGCTTAAAGGTTAAAGGAACAG ACTATAACACCCCTGATGGAACATGCGTTCGAGATTATATTGATGTAACTGACCTGGTTGATGCTCACGTCAAAGCTCTT GAAAAGGCACAACCTGGTCAAGTTGGGATCTACAATGTTGGCACTGGAAAAGGTAGATCAGTGAAGGAGTTTGTGGATGC TTGTAAAAAGGCCACAGGGGTGAACATCAAAGTAGACTTCCTTCCCCGCAGGCCCGGTGATTACGCTGAGGTTTATAGCG ACCCGGCTAAGATCAGACGTGAACTGAATTGGACTGCACAACACACTGACCTTCAAAAGAGCATACAAGTTGCATGGAAA TGGCAGAAATCGCGCCCTGATGGTTATGGTGTATCATCTGCAATCTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0264300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLNFARSRSQPRATRAMSLGGMDYVDPKRKGNVAGKVFLVAVLTALCILIIKKSPSFTSPSPFSVSEPGVTHVLVTGGAG YIGSHATLRLLKESYRVTIVDNLSRGNLGAVRVLQNLFPEPGRLQFIHADLGDSKSVNKIFSENKFDAVMHFAAVAYVGE STLHPLKYYHNITSNTLLVLESMAKYGVKTLIYSSTCATYGEPEKMPITEETEQKPINPYGKAKKMAEDIILDFSKNSKM AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGITSGLKVKGTDYNTPDGTCVRDYIDVTDLVDAHVKAL EKAQPGQVGIYNVGTGKGRSVKEFVDACKKATGVNIKVDFLPRRPGDYAEVYSDPAKIRRELNWTAQHTDLQKSIQVAWK WQKSRPDGYGVSSAI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 32 32 - –
TMHMM
TMhelix
32 51 20 - –
Phobius
TRANSMEMBRANE
33 51 19 - –
PANTHER
PTHR43349:SF39
39 413 375 2.2E-228 –
PANTHER
PTHR43349
39 413 375 2.2E-228 –
Phobius
NON_CYTOPLASMIC_DOMAIN
52 415 364 - –
CDD
cd05247
72 403 332 2.27917E-167
IPR005886
SUPERFAMILY
SSF51735
72 408 337 1.14E-84
IPR036291
Gene3D
G3DSA:3.40.50.720
73 346 274 1.8E-114 –
TIGRFAM
TIGR01179
73 408 336 8.4E-120
IPR005886
Pfam
PF16363
74 388 315 2.6E-53
IPR016040
Gene3D
G3DSA:3.90.25.10
264 402 139 1.8E-114 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003978
Molecular function UDP-glucose 4-epimerase activity Catalysis of the reaction: UDP-glucose = UDP-galactose.
Subterm of
GO:0006012
Biological process Galactose metabolic process The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0264300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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