Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0264300.4

Overview

Field Value
Gene ID LotjaGi6g1v0264300
Transcript ID LotjaGi6g1v0264300.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|A0A072VG20|A0A072VG20_MEDTR UDP-D-glucose/UDP-D-galactose 4-epimerase; Found in the gene: LotjaGi6g1v0264300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:57781852..57786009) extracted from Lotus japonicus Gifu genome v1.2.

AGAAGTCAGCCGAGGGCAACTAGAGCTATGTCATTAGGAGGTAAGGTTACTCTGTCAAATTTGAGCATATATGGTGGTTG ACCAACTCTGTGTTTGTATTGAATGAAGCTGGGGTAGTTAAAGCATCAATATCTCTGTGTTTATAGGATAGATTGGATGC AAGTATATGGCATGAGGTGTTCATAAATTAATTAGTTGTTGATTTGTTTCATGTTGGTTGGGTTTCTAATTATAATTCAT TAATATTTTACATTGAATTTTTAAGATATATTTTCACACTTATGCTTTCTGTCTTGTAGGCATGGACTATGTGGATCCAA AAAGGAAGGGCAATGTTGCTGGAAAAGTTTTTCTCGTTGCAGTATTAACGGCATTATGCATTTTGATAATCAAGAAATCT CCATCTTTTACTTCTCCTAGTCCGGTATTCCTTCAAATAGACAAACAAATATCATGGTCAACCATGCACATATATTTATA TATTGTGCATGTCTATATATCTCTAGATTTTATTTACTAATGGATGTGGACATTGTGATATTTAATATCTTTGTACACAT TACAAACTTGAAAGAGTTAGCCGGCTAAATATCCTATTAGACATATTAAAACAAATTTTATCAGTCGCTTCTTTTTAATC AATAGATGATTAGATAAATGATTTTTATATTTTCTTATGCCATTTATAAGTTTACAGCATGATGCTTCCTTTTGTGGTGG TGGAATTTGATTGGAATTCAATGCGATGGCTGTATGGAATTTTTCCGGGGGCGGGGGGGGGACTTCTCGGGACAGTTTTT GTAGTCTGTTCTTCCAGCTGAGTTAGATAAAACATCCGATGTATCTAAGTTTCTATCTTCTTTTCACGTTATGTAAATGT TTGAAGTAAAGCACTATGGACTATTCTAATTTACGTCTTGTTGTTTGACAGATTTCTATGATAGGTCGGCTCTTATGGCC TTTGGCAGATATAAAAATTCTGTGTAGTTTCTTTGGCTGTTTGATTATTTTACTGCTCAGAGCCACCTTGATGTGTAGAT GAATCATTGTTAGAGATGATGAGCTGTTTTTACTCTTTATTTATTCAAAGAATAATGAAACTTTTCTATTTTAATTGGGT TTTCACCAGTGTTGTCAGAAGGATACAAGAAAGAAAGAAAATAGATGAAAGAAAACTATAAGGATTTACAAGGGGGAATT TATAAAAGATAGGATGTATTATTTTCAGTTGATAATTTTCTTTTTCTTTTTTTGCTATTATTTGGTATTCAAATCAACAT CCATCTTACCCTTTTATTCAATTTGGTGATTCTGCTTCTTCTTTTTTGGGCCAGTTTTCTGTCTCTGAACCAGGGGTCAC TCATGTATTAGTGACAGGAGGTGCAGGCTACATCGGCTCACATGCTACCTTACGGCTACTGAAGGAGTCTTACCGTGTCA CCATAGTAGTATGTCTCTTCATATTATTGAAAACTTCTCTGACAAAATAAATGCACGGCACTCATCAGTCTGACATTTTC TCCCTTGCAGGATAATCTGTCACGAGGAAATTTAGGTGCCGTCAGGGTTCTTCAAAACCTATTTCCAGAACCTGGAAGGC TTCAATTTATACATGCTGACTTGGGAGATTCGAAATCTGTATCCTTGTAATATTTCCTTGTTGCCTGAAATAATTTGGTG TTGAATGTTAACTTTGATTGAAGCATAGTGTTAGAGAATGCCCCAGAGAAATTGTGTACTTGACTGGTTATCAGGTTAAT AAAATCTTTTCAGAGAATAAATTTGATGCTGTGATGCACTTCGCTGCTGTTGCATATGTGGGAGAAAGCACACTTCACCC TCTTAAGTAAGTACTTGTAACTTTTATTGGGGACATTATTTCCAGTTGAACAATTTGTGGGAAGTAGTAGTATACAATTT GTGTGCATTTCTAATTTCCTCCATAAGTAGCATGAACAACAGATTGGCTTTTTAGACACAAATTGAAATTCTCAATTTTA TATGAATTCTCTTTCAAGGTTTGTTTAACTAAGGTCTTGGTTTTGTGGATTCAATATGCTCTGCCTTTGATAATATACCT CTCTTAGTTAAGGTTGACATTCCTATCATTACCTTCATAGTGGTTTACTCAAAAGTTATCTAGGCCCAAGGAAGTTCCAA ATAAAAAAAGTACATGATTGTGAAATGAATGTTAAGGTTGGCAAAATCAAAATTGATTCTAAGTCTAGATTATTTGGGAT AAAGACCTAAATTTGTTTTATGGGATTATGTCTATATGTTTTATCTACTATGACTTATTTTAATTAGATTTAGCTGAGAT GGATCAGTGTTAAAATTCATCGATTTCAATTCTACTTTTTTATGTTGTATAACTTGTTTGTCAGGTATTATCACAATATT ACATCAAATACCTTGTTGGTATTGGAGTCTATGGCTAAATATGGTGTGAAGACGTTGATATATTCTAGTACATGTGCAAC ATACGGGGAACCGGAAAAGATGCCCATTACAGAAGAAACGGAACAGGTGTGAAATATTCTAAGTGTGACTGAATGTGAAC TATAGTTGAGAACTTTCGTTTTTAACTACAGTCTATGTCTAATGTTTATTTGGTTACTTTAATGAACATTGAAACCTATG TTAAATTGATATTCTTCAATTTCAGAAACCAATTAATCCATATGGAAAAGCCAAGAAGATGGCAGAAGATATCATCCTTG ATTTTTCTAAAAATTCTAAGATGGCCGTAATGATTCTGAGGTTTGTACTTTGCATTTAAGTTATTAGTGATTTCTCCAAT GTTTCAAATAGCTTTTTTTTATGTCTTATTCATGTGCCCTTTGTTTCTTAAGTTATTAGTAATTCTGAACATATCTTACA TGTAAGGAAACCTTGCAACAAGTGTTCCACGGTTTAAGTCAAATGCATTTTGTGATTTTTATTTTCTTTGTTTTTTGGCA TATAGATGTTATGAATCCTTATTATTAATGCAGACTTCTCATAATCTGCTATTATATATGACATTTTCTTCTGGGAAGGT TTGATTTGAAGGTGACCTAGACATGCACCTTCATGTGACAAAAATCTTTATTGCCATGTACTGATAGGAAAAGAAGTATC AGTACTTTTGGATTTCATAACATAAGTAATTGTTAATTTCAAGTTAATAATTCCTACTATCTATGGTTTGTGATTATTGA TAACTTTTCTTTGGGGAACATTCAGATATTTCAATGTGATTGGATCAGACCCTGAGGGCAGATTAGGTGAAGCACCGAGA CCTGAACTTCGAGAGCATGGTCGAATTTCAGGCGCTTGCTTTGATGCAGCTCGTGGCATTACATCTGGCTTAAAGGTATC CTGCTATTATAATTTTTACTTTATTCTTGTGCTGTTTTATTTTATAGAGAAGCTTAAGCCATCTGATTTTCCATTATGTA GAATTCTTCTATATATTATAATTTATTTCACTCTAGTCTGCTTTCACAGCCAACTTGAAAACCAGCCAAAAAATTGTTTC TGAACTAATATGCCGGTATATAATGAATGTGTACTCATTGTATTTGTTGCCACAATTTGCAGGTTAAAGGAACAGACTAT AACACCCCTGATGGAACATGCGTTCGAGATTATATTGATGTAACTGACCTGGTTGATGCTCACGTCAAAGCTCTTGAAAA GGCACAACCTGGTCAAGTTGGGATCTACAATGTTGGCACTGGAAAAGGTAAGTTTAACAATTTGAATATAGCATACTTGG ACCAGCTTCTCTTTCACCAGAATCAATTCTGAAACCCGAAAGCTACCCACAGATTGATTCTGGCTTCAGAGTCAATTGTA GAAGTGTTTCCAAACTTGGACATAGTCTATCCACATGTTTCATAGTTATCTCAAAAGTTCTCATAGTGGGGTTGTTTCCC AGGTAGATCAGTGAAGGAGTTTGTGGATGCTTGTAAAAAGGCCACAGGGGTGAACATCAAAGTAGACTTCCTTCCCCGCA GGCCCGGTGATTACGCTGAGGTTTATAGCGACCCGGCTAAGATCAGACGTGAACTGAATTGGACTGCACAACACACTGAC CTTCAAAAGAGCATACAAGTTGCATGGAAATGGCAGAAATCGCGCCCTGATGGTTATGGTGTATCATCTGCAATCTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0264300.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCATTAGGAGGCATGGACTATGTGGATCCAAAAAGGAAGGGCAATGTTGCTGGAAAAGTTTTTCTCGTTGCAGTATT AACGGCATTATGCATTTTGATAATCAAGAAATCTCCATCTTTTACTTCTCCTAGTCCGTTTTCTGTCTCTGAACCAGGGG TCACTCATGTATTAGTGACAGGAGGTGCAGGCTACATCGGCTCACATGCTACCTTACGGCTACTGAAGGAGTCTTACCGT GTCACCATAGTAGATAATCTGTCACGAGGAAATTTAGGTGCCGTCAGGGTTCTTCAAAACCTATTTCCAGAACCTGGAAG GCTTCAATTTATACATGCTGACTTGGGAGATTCGAAATCTGTTAATAAAATCTTTTCAGAGAATAAATTTGATGCTGTGA TGCACTTCGCTGCTGTTGCATATGTGGGAGAAAGCACACTTCACCCTCTTAAGTATTATCACAATATTACATCAAATACC TTGTTGGTATTGGAGTCTATGGCTAAATATGGTGTGAAGACGTTGATATATTCTAGTACATGTGCAACATACGGGGAACC GGAAAAGATGCCCATTACAGAAGAAACGGAACAGAAACCAATTAATCCATATGGAAAAGCCAAGAAGATGGCAGAAGATA TCATCCTTGATTTTTCTAAAAATTCTAAGATGGCCGTAATGATTCTGAGATATTTCAATGTGATTGGATCAGACCCTGAG GGCAGATTAGGTGAAGCACCGAGACCTGAACTTCGAGAGCATGGTCGAATTTCAGGCGCTTGCTTTGATGCAGCTCGTGG CATTACATCTGGCTTAAAGGTTAAAGGAACAGACTATAACACCCCTGATGGAACATGCGTTCGAGATTATATTGATGTAA CTGACCTGGTTGATGCTCACGTCAAAGCTCTTGAAAAGGCACAACCTGGTCAAGTTGGGATCTACAATGTTGGCACTGGA AAAGGTAGATCAGTGAAGGAGTTTGTGGATGCTTGTAAAAAGGCCACAGGGGTGAACATCAAAGTAGACTTCCTTCCCCG CAGGCCCGGTGATTACGCTGAGGTTTATAGCGACCCGGCTAAGATCAGACGTGAACTGAATTGGACTGCACAACACACTG ACCTTCAAAAGAGCATACAAGTTGCATGGAAATGGCAGAAATCGCGCCCTGATGGTTATGGTGTATCATCTGCAATCTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0264300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSLGGMDYVDPKRKGNVAGKVFLVAVLTALCILIIKKSPSFTSPSPFSVSEPGVTHVLVTGGAGYIGSHATLRLLKESYR VTIVDNLSRGNLGAVRVLQNLFPEPGRLQFIHADLGDSKSVNKIFSENKFDAVMHFAAVAYVGESTLHPLKYYHNITSNT LLVLESMAKYGVKTLIYSSTCATYGEPEKMPITEETEQKPINPYGKAKKMAEDIILDFSKNSKMAVMILRYFNVIGSDPE GRLGEAPRPELREHGRISGACFDAARGITSGLKVKGTDYNTPDGTCVRDYIDVTDLVDAHVKALEKAQPGQVGIYNVGTG KGRSVKEFVDACKKATGVNIKVDFLPRRPGDYAEVYSDPAKIRRELNWTAQHTDLQKSIQVAWKWQKSRPDGYGVSSAI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 16 16 - –
Phobius
TRANSMEMBRANE
17 35 19 - –
PANTHER
PTHR43349
28 397 370 2.8E-228 –
PANTHER
PTHR43349:SF39
28 397 370 2.8E-228 –
Phobius
CYTOPLASMIC_DOMAIN
36 399 364 - –
SUPERFAMILY
SSF51735
56 392 337 9.93E-85
IPR036291
CDD
cd05247
56 387 332 4.97318E-167
IPR005886
TIGRFAM
TIGR01179
57 392 336 7.4E-120
IPR005886
Gene3D
G3DSA:3.40.50.720
57 330 274 1.6E-114 –
Pfam
PF16363
58 372 315 2.3E-53
IPR016040
Gene3D
G3DSA:3.90.25.10
248 386 139 1.6E-114 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003978
Molecular function UDP-glucose 4-epimerase activity Catalysis of the reaction: UDP-glucose = UDP-galactose.
Subterm of
GO:0006012
Biological process Galactose metabolic process The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0264300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…