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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0266000 |
| Transcript ID | LotjaGi6g1v0266000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Folate-biopterin transporter; TAIR: AT1G64890.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9XIQ7|FBT7_ARATH Probable folate-biopterin transporter 7; TrEMBL-Plants: tr|I3SSK5|I3SSK5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0266000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57983267..57984340) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAGAGATTTGTTTATGCAGCTTTCTTGCAGGCACTGTCATGGCTAGCCGTAGCAATCTCTCCATCAAACATATCTAT TTTCACTATCTCCATATACCTCCTCCTTAGTAATCTTGGTGCTTCAATAGGTGAGGTTGCAAATGACGCCATTGTTGCAG AAATGGGTAAACAGCCTCCTTCCTCAAGCAAGAACTCTCAATCGTCATCCTCAGGCAACCTCCAATCATTTGTTTGGATA GCGTCTTCTTTAGGAGGAGTCCTTGGAAACCTTCTCGGCGGAATTTTTATTGGACGGTTCTCCCCGCAGACCATGTTTTT GTTTTACGGCCTTCTCCTTTCTCTCCAATTTTTCATAACCATTTTAGTTCGTGAGAGCTCTCTTGGGCTCCCAAAGAGTC CATCTGTTGGGATAAGGAAACAGCTTTCAGAGCTATCGGCTGCTCTAAGAAAACCTGAAATTGCTTATTCGATATCATGG TTTGCAGCTTCTTATGCCATTATTCCTGCACTTACAGGCACCATGTTCTTTTACCAGACACAGTATTTGAAAATTGGCTC ATCTGTATTGGGCATCTCCAAGGTATTTGGCCAGGCAACAATGCTTCTATGGGGCATCGTTTACAATCAATACCTGAAAT CTGTCCCGCCAAGGAAACTGATATCAACCATTCAAGCTATGATGGCTGTCTTAATGGTTTCAGATTTCTTGTTTGTGCGA GGCTTTTACCGACAAATGGGCGTGCCAGACTCGCTCTATGTTGTGATTTTCTCCGGATTCTTGGAGGTTCTGTTTTTCTT CAAGATTCTGCCATTCAGTGTCTTGATTGCGCAGCTGTGTCCACCAGGATGTGAAGGGTCTATTATGGCATTTCTGATGT CTGCGGTAGCCTTGGCCTTCATTGTGAGTGGATACCTTGGTGTTGCCCTTGCATCATACATCAAGGTAACAGGAAGTGAC TTTTCAGGACTTCCACTTGGGCTTTTGATACAAGCTGCATGTACTTTATTGCCAATTTTCTGGTCATCGTGCATACCTGA GTATGTAAAAACAAAATCCAAGCGAAAAGACTAG
CDS sequence (LotjaGi6g1v0266000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAAACAGCCTCCTTCCTCAAGCAAGAACTCTCAATCGTCATCCTCAGGCAACCTCCAATCATTTGTTTGGATAGC GTCTTCTTTAGGAGGAGTCCTTGGAAACCTTCTCGGCGGAATTTTTATTGGACGGTTCTCCCCGCAGACCATGTTTTTGT TTTACGGCCTTCTCCTTTCTCTCCAATTTTTCATAACCATTTTAGTTCGTGAGAGCTCTCTTGGGCTCCCAAAGAGTCCA TCTGTTGGGATAAGGAAACAGCTTTCAGAGCTATCGGCTGCTCTAAGAAAACCTGAAATTGCTTATTCGATATCATGGTT TGCAGCTTCTTATGCCATTATTCCTGCACTTACAGGCACCATGTTCTTTTACCAGACACAGTATTTGAAAATTGGCTCAT CTGTATTGGGCATCTCCAAGGTATTTGGCCAGGCAACAATGCTTCTATGGGGCATCGTTTACAATCAATACCTGAAATCT GTCCCGCCAAGGAAACTGATATCAACCATTCAAGCTATGATGGCTGTCTTAATGGTTTCAGATTTCTTGTTTGTGCGAGG CTTTTACCGACAAATGGGCGTGCCAGACTCGCTCTATGTTGTGATTTTCTCCGGATTCTTGGAGGTTCTGTTTTTCTTCA AGATTCTGCCATTCAGTGTCTTGATTGCGCAGCTGTGTCCACCAGGATGTGAAGGGTCTATTATGGCATTTCTGATGTCT GCGGTAGCCTTGGCCTTCATTGTGAGTGGATACCTTGGTGTTGCCCTTGCATCATACATCAAGGTAACAGGAAGTGACTT TTCAGGACTTCCACTTGGGCTTTTGATACAAGCTGCATGTACTTTATTGCCAATTTTCTGGTCATCGTGCATACCTGAGT ATGTAAAAACAAAATCCAAGCGAAAAGACTAG
Protein sequence (LotjaGi6g1v0266000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKQPPSSSKNSQSSSSGNLQSFVWIASSLGGVLGNLLGGIFIGRFSPQTMFLFYGLLLSLQFFITILVRESSLGLPKSP SVGIRKQLSELSAALRKPEIAYSISWFAASYAIIPALTGTMFFYQTQYLKIGSSVLGISKVFGQATMLLWGIVYNQYLKS VPPRKLISTIQAMMAVLMVSDFLFVRGFYRQMGVPDSLYVVIFSGFLEVLFFFKILPFSVLIAQLCPPGCEGSIMAFLMS AVALAFIVSGYLGVALASYIKVTGSDFSGLPLGLLIQAACTLLPIFWSSCIPEYVKTKSKRKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| Gene3D | 9 | 302 | 294 | 1.1E-15 | – | |
| PANTHER | 9 | 302 | 294 | 4.3E-143 | – | |
| PANTHER | 9 | 302 | 294 | 4.3E-143 | ||
| Pfam | 12 | 65 | 54 | 2.1E-7 | ||
| SUPERFAMILY | 17 | 300 | 284 | 6.02E-19 | ||
| TMHMM | 22 | 44 | 23 | - | – | |
| Phobius | 23 | 46 | 24 | - | – | |
| CDD | 23 | 287 | 265 | 3.07363E-43 | – | |
| Phobius | 47 | 51 | 5 | - | – | |
| TMHMM | 51 | 69 | 19 | - | – | |
| Phobius | 52 | 69 | 18 | - | – | |
| Phobius | 70 | 103 | 34 | - | – | |
| TMHMM | 102 | 124 | 23 | - | – | |
| Phobius | 104 | 125 | 22 | - | – | |
| Pfam | 108 | 293 | 186 | 1.7E-42 | ||
| Phobius | 126 | 130 | 5 | - | – | |
| TMHMM | 131 | 153 | 23 | - | – | |
| Phobius | 131 | 154 | 24 | - | – | |
| Phobius | 155 | 165 | 11 | - | – | |
| TMHMM | 166 | 188 | 23 | - | – | |
| Phobius | 166 | 185 | 20 | - | – | |
| Phobius | 186 | 196 | 11 | - | – | |
| Phobius | 197 | 222 | 26 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 223 | 233 | 11 | - | – | |
| Phobius | 234 | 260 | 27 | - | – | |
| TMHMM | 238 | 260 | 23 | - | – | |
| Phobius | 261 | 271 | 11 | - | – | |
| TMHMM | 267 | 289 | 23 | - | – | |
| Phobius | 272 | 295 | 24 | - | – | |
| Phobius | 296 | 303 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0266000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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