Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0266600 |
| Transcript ID | LotjaGi6g1v0266600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatidylinositol transfer protein; TAIR: AT1G30690.1 Sec14p-like phosphatidylinositol transfer family protein; Swiss-Prot: sp|Q94C59|PATL4_ARATH Patellin-4; TrEMBL-Plants: tr|A0A151SBB9|A0A151SBB9_CAJCA Patellin-4; Found in the gene: LotjaGi6g1v0266600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:58040497..58042315) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTGCTGAGGCTATGGCTCAAGAAGAAACCCAGACACCTGAGGTTGTTGTTGCACAAGAGGGGAAGGTTGTTGCTGA AGGAGATATGGCAGTGGAACCAATGGAGTCAGAAACCAAACCCAAGACGGTGGAGAAGAGCTCTTCTTACAAGGAAGAGA GCAACTTCCTTTCTGATCTCAAGGAGTTTGAGAGAAAGGCTTTGAATGAGTTCAAGGCAAAGCTGGAAGAAGCTATCTCT GGTAACACCCTGTTTGAGAAAGAAGAGACAAAGAAGGTTGAAGAATCAACAATAGTTGCTGAGGAAGAAGGTGCTGAAGA GAGTAAGGAAGCTGTGAAAGAAGAAGAGAAAGTTGAGGAAGAAAAGGTTGAAGGTTCAACAACAGTTGCTGAGGAAGAAG GTGCCGAAGAGAGTGAGAAAGCTGTGAAAGAAGAAGAGAAGGTTGAGGAGGAGAAGGAGAAGGATGCTGTGTCCCTTTGG GGGGTACCCCTTTTGCCAAGTGAGGGAGCTGAAGGTGCTGATGTGGTTCTGTTGAAGTTCTTGAGGGCGAGGGAGTTCAA GGTGAATGAAGCTTTTGAGATGCTGAAGAAGACCCTTAAATGGAGGAAGGAATCGAAGATTGATTCGGTTCTGGATGAGG AATTTGACTCTGATTTAGCCTCTGCTGCTTACATGAATGGTGTTGATCGTGAAGGGCACCCTGTGTGCTACAACATTTTT GGTGTGTTTGACAGTGAAGAGATTTACCAGAAGGCTTTTGGCACAGAGGAGAAGAGAAGTGAGTTCTTGAGATGGAGGTG CCAGTTGATGGAGAAAGGTATTCAGAAGCTGAATTTGAAGCCAGGTGGTGTTTCTTCTTTGCTTCAAATCAATGACCTTA AGAATTCCCCTGGTCCTTCCAAGAAGGAGCTGAGAGTTGCTACAAAGCAAACCATTGCAATGTTGCAGGACAATTACCCT GAATTGGTGGCAAAAAATGTAAGTTGGTGCCTTCACCTTTCACCCCTTTTTGAATTGTTTATGTAATTCAATTGTCAATG TGATATATTGTGTATGTTGATATTCAATTGATATTCATTGCAGATTTTCATCAATGTTCCTTTCTGGTATTATGCTTTGA ATGCTCTGATATCTCCTTTCTTAACCCAAAGAACAAAGAGCAAATTTGTGATTGGTCGTCCTGCTAAGGTCACTGAGACA CTCATCAAGTATGTTCTCTAATCCATTAACCAATTATGTACATTGTTAAAATTCAATTTCTATCTCAATTTTAAAAAGTA GCAATCTCATAAATGACCCTAACTCCTTTGTATCAATCAAACAGGTACATTCCAATTGAGGAAATCCCAGTTCACTATGG TGGTTTCAAGAGGGAAGATGATTCTGAGTTCACTGCCCAAGATGGTGCTGCTTCAGAACTCTTTCTCAAGGCTGGATCAA CTGCAACTATTGAGATTCCTGCATTAGAGGTACCAACTAGTGCTTAAAGTTTTATAACTTATGTATATGATTCTTGTAAT GCTTTAGAACTATTGGACTAAAAAATGTTAATGCATCTTAACAGGTTGGAAGCAATATATGTTGGGATTTGACAGTTATG GGTTGGGAAGTAAGTTACAAGGAGGAATTTGATCCTGCTGATGAGGGTTCTTACACAGTGATTGTGCAAAAAGGAAAGAA GATTGGTTCACAAGAAGGACCTATTAGGAACACTTTCAGGAACAATGAACCTGGGAAAGTTATCCTGACAATTGAGAACA CATCAAACAAGAAGAAGAGGGTTCTGTATCGGTACAAGGCAAGCAAGAGCGCGCTCTGA
CDS sequence (LotjaGi6g1v0266600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGCTGAGGCTATGGCTCAAGAAGAAACCCAGACACCTGAGGTTGTTGTTGCACAAGAGGGGAAGGTTGTTGCTGA AGGAGATATGGCAGTGGAACCAATGGAGTCAGAAACCAAACCCAAGACGGTGGAGAAGAGCTCTTCTTACAAGGAAGAGA GCAACTTCCTTTCTGATCTCAAGGAGTTTGAGAGAAAGGCTTTGAATGAGTTCAAGGCAAAGCTGGAAGAAGCTATCTCT GGTAACACCCTGTTTGAGAAAGAAGAGACAAAGAAGGTTGAAGAATCAACAATAGTTGCTGAGGAAGAAGGTAAAGCTGT GAAAGAAGAAGAGAAGGTTGAGGAGGAGAAGGAGAAGGATGCTGTGTCCCTTTGGGGGGTACCCCTTTTGCCAAGTGAGG GAGCTGAAGGTGCTGATGTGGTTCTGTTGAAGTTCTTGAGGGCGAGGGAGTTCAAGGTGAATGAAGCTTTTGAGATGCTG AAGAAGACCCTTAAATGGAGGAAGGAATCGAAGATTGATTCGGTTCTGGATGAGGAATTTGACTCTGATTTAGCCTCTGC TGCTTACATGAATGGTGTTGATCGTGAAGGGCACCCTGTGTGCTACAACATTTTTGGTGTGTTTGACAGTGAAGAGATTT ACCAGAAGGCTTTTGGCACAGAGGAGAAGAGAAGTGAGTTCTTGAGATGGAGGTGCCAGTTGATGGAGAAAGGTATTCAG AAGCTGAATTTGAAGCCAGGTGGTGTTTCTTCTTTGCTTCAAATCAATGACCTTAAGAATTCCCCTGGTCCTTCCAAGAA GGAGCTGAGAGTTGCTACAAAGCAAACCATTGCAATGTTGCAGGACAATTACCCTGAATTGGTGGCAAAAAATATTTTCA TCAATGTTCCTTTCTGGTATTATGCTTTGAATGCTCTGATATCTCCTTTCTTAACCCAAAGAACAAAGAGCAAATTTGTG ATTGGTCGTCCTGCTAAGGTCACTGAGACACTCATCAAGTACATTCCAATTGAGGAAATCCCAGTTCACTATGGTGGTTT CAAGAGGGAAGATGATTCTGAGTTCACTGCCCAAGATGGTGCTGCTTCAGAACTCTTTCTCAAGGCTGGATCAACTGCAA CTATTGAGATTCCTGCATTAGAGGTTGGAAGCAATATATGTTGGGATTTGACAGTTATGGGTTGGGAAGTAAGTTACAAG GAGGAATTTGATCCTGCTGATGAGGGTTCTTACACAGTGATTGTGCAAAAAGGAAAGAAGATTGGTTCACAAGAAGGACC TATTAGGAACACTTTCAGGAACAATGAACCTGGGAAAGTTATCCTGACAATTGAGAACACATCAAACAAGAAGAAGAGGG TTCTGTATCGGTACAAGGCAAGCAAGAGCGCGCTCTGA
Protein sequence (LotjaGi6g1v0266600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTAEAMAQEETQTPEVVVAQEGKVVAEGDMAVEPMESETKPKTVEKSSSYKEESNFLSDLKEFERKALNEFKAKLEEAIS GNTLFEKEETKKVEESTIVAEEEGKAVKEEEKVEEEKEKDAVSLWGVPLLPSEGAEGADVVLLKFLRAREFKVNEAFEML KKTLKWRKESKIDSVLDEEFDSDLASAAYMNGVDREGHPVCYNIFGVFDSEEIYQKAFGTEEKRSEFLRWRCQLMEKGIQ KLNLKPGGVSSLLQINDLKNSPGPSKKELRVATKQTIAMLQDNYPELVAKNIFINVPFWYYALNALISPFLTQRTKSKFV IGRPAKVTETLIKYIPIEEIPVHYGGFKREDDSEFTAQDGAASELFLKAGSTATIEIPALEVGSNICWDLTVMGWEVSYK EEFDPADEGSYTVIVQKGKKIGSQEGPIRNTFRNNEPGKVILTIENTSNKKKRVLYRYKASKSAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 119 | 113 | 6.9E-215 | – | |
| PANTHER | 7 | 119 | 113 | 6.9E-215 | – | |
| Gene3D | 29 | 374 | 346 | 1.7E-62 | ||
| SUPERFAMILY | 55 | 177 | 123 | 1.1E-15 | ||
| Coils | 99 | 119 | 21 | - | – | |
| PANTHER | 111 | 463 | 353 | 6.9E-215 | – | |
| PANTHER | 111 | 463 | 353 | 6.9E-215 | – | |
| Pfam | 112 | 162 | 51 | 4.8E-9 | ||
| SMART | 138 | 163 | 26 | 5.1E-7 | ||
| PRINTS | 141 | 163 | 23 | 7.5E-6 | – | |
| CDD | 177 | 346 | 170 | 1.78123E-33 | ||
| ProSiteProfiles | 177 | 352 | 176 | 17.958 | ||
| SMART | 182 | 349 | 168 | 1.3E-37 | ||
| SUPERFAMILY | 188 | 346 | 159 | 1.14E-35 | ||
| Pfam | 188 | 346 | 159 | 1.3E-25 | ||
| PRINTS | 271 | 292 | 22 | 7.5E-6 | – | |
| PRINTS | 304 | 323 | 20 | 7.5E-6 | – | |
| ProSiteProfiles | 328 | 460 | 133 | 9.83 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0266600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…