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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0268100 |
| Transcript ID | LotjaGi6g1v0268100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fatty acid 2-hydroxylase-like protein; TAIR: AT2G34770.1 fatty acid hydroxylase 1; Swiss-Prot: sp|O48916|FAH1_ARATH Dihydroceramide fatty acyl 2-hydroxylase FAH1; TrEMBL-Plants: tr|A0A072V5H1|A0A072V5H1_MEDTR Fatty acid 2-hydroxylase-like protein; Found in the gene: LotjaGi6g1v0268100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:58293279..58296364) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTGCGCAGAACTTCGTAGTTGATTTGAGCAAGCCCCTTGTTTTCCAGGTACAGGGACAACCCTTCAAGTTCTTATT TCAAACTACATGCCCTGTTTTTGCAGTATAATTAGAATGTCATATAGGTTTCTTTCTGTTTATGGGTTAACATAGGTTGA TATAACAAGTGGATGCTTATAAGTTGTACCCTAAGTAATCGTTGAGTGAACCTGACCAATTTTTTTAATTTCTATAGGTT GGACATCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTTAGCAAGGAAGGCCCCCGTTTCTTTCAAAATGA TATTCTGGAGGTATAGACTACAACTACAAGAACGAAAGTCTTGCTACACTCAGTGGTGTTGGTTAGACAGAGCAATTGAT GCCATGGGCATCATCAAAATCCAAGTTTCTAGTAAAACCATTTAGATAATGGTCTTTTTATTGTTTCTCCAAATTTTTTC TTTGCTACCTCCTCTACTTTTTATTATGACTATTTTCCAATTCATCTACTTTTCTCATGGAGCTTTTATTGATCTTCTTC TCACATGACTAAACTTCATGAGGCGAGTTTCAGTTTTCTTGCCCTAAATTGTTTATAATCTAAGTTTTTCCCTGGCTATT CACTCAATTTTTTTTTCACGTATTTATAATTTTCTACTCATTCACCTGTGCATTACCATCACCAATACATTTATTTTTTG CTCTTGTCCACCCATCACATCCAACATTTACTGCCATAGCGGCTAGCGCAATGCTAGTAATATAGCTTTCCGATAAATTT TGATGGGCATGTTGCAACTAATTGGGATTATGGATCTATCTTCAATTCTTCTATCAATCGACCACATTAAAAAAATTTAA ATTCTATGTTCTGATAATTCATTTTAAGATATGAAGTGTTCTTGACTTGTTATTACTTGGAACAGTTCTTGACACTCACA GTCTGGTGGGCAATTCCTGTCATTTGGTTGCCAGTTGTATGTTGGCTTGTATATAACTCTATTCAAAGGGGCCTCAATTG TCCTCATGCAGCTCTAATGGTGGTTCTTGGCATTTTCGTGTGGTCATTGCTGGAATACTCATTGCACCGTTTTCTTTTCC ACATTAAAACAAAAACCTACTGGTTAGATCTCTCTCTCCCTCTCCCTCTCCCTCTCTCTTGCCTTTTTTTCCACATAACA AAATCATATATTAATTTTGAGAAATGCTACCCAACCAAACATCCTCTCCAACAAGCTCTTTTCAACACATATTATTTGAT AAAATTCGCGTGGTTCCACTGAGGGTGGATCTTACCAAATGGGGAAGTGAAGCTCCAAATGATTTAGTGGGTCCCGTATC AATTTCACATAATGATAAAGTGTGTATTGGAAAAAGCTTGTTGCTAGCCATATTCGATAGTTTTTGCTTGTAGTTGTCTT TTACCATGTCTGCTTAGAGTAACTACTTATTGATTTGGGTAACACTGAAAGCTTGTGTCCTTTTTTGTTCTTTTTTTGGT TAACTATTGGTTCAGGGGAAATACCATGCATTATCTTCTCCATGGCTGCCACCATAAGCATCCCATGGATGGCTTGAGAC TTGTTTTCCCCCCTACTGCAACGGCTATATTATTGTTCCCGGTATCTTCTATGCCATATTATATACTGCTCTCTTTCATA ATTTATTTGCTGCTCAGAGAATTATGGGATTTTAAATTTCTTCTAAGTCAGAAAGTGTACCTTTTCTTTTTTATCTTTCT TCTCTGTTTGAATAGAAACTTGGCTTGCTTAAGTTTTTTGGTCCTTTTATTGTCACAGTAACAACCTATTCATGTTAGTC ATTCTTTTTCAGTTTGTTCATTTGAATAGAAACTTGGTTTGAATTTATTTTTAGTTTTATGTTTGAAAAGGATAGTTCTT CCCCAAATAATTATTTGACTTGTTTATACTCTCATTCCGTGATAGGAGCTTAATAAAATCAAAGAAATGTTGCTTCTGGA TTGCTTTGCTGAAGTCACATAAGAGGCTTCAGCTTTGTAGACCAAAATTTGTAGCTTTCTTTCGAAAATGGCTAGAATAC TTTTTGACATTTTATAAAATTATTTGATTAATCATCAATATAGATATGTCAGGAGGATTGGTAAGATCTAGAGATAATAT GTGTACACACCATGGTTTAAGGTTCCTTGAAGTGATGTTGGTGTTTTTGTCTGCTGTGTCATCCAGTTCTGGAACGTGGT GAAGCTCATGTCCACCCCTTCAACTGCGCCTGCTTTACTTGGAGGTGGCTTATTGGGTTATGTAATGTATGATTGCACAC ATTATTACTTGCACCATGCTCAGCCGAAGACTGAAATTCCCCGAAACCTCAAGGTACAGACATTTCCCTCCTTTAACTGT GGATGGCAATTAAATTACCATTTATTGCTCCAATGCTGCTAAGAAAAACCATTTTGTTCTATATCACTGATTAGACAAAT AGTTGTGTAGTTTACCTGTTATAGCTGATAGTATTTTATTTCAGTAGAAACTGAATGGCATTAAACTGAGATACAGTGAA TGTAGAGGCATTTCCCCCCTAAATTAATATGCTTATCAGCCTCTTGAAATATGGGTCCCAAAACATGACAGTATTTTGGG GAAGGAATTTGAATTTGGTCTTCCTATTCTTGGAAACTAGTTTAATTTTCACAGATTCTGCTAGGGACCCTAAAATCCTG GATAGAAGTTTGTATCTTTTTTTTTAATATCTGAATTCTAAACATGATATTGTCATAATCCCAAGGAAAACTGAAGGATT TAAATCACTTGTAAAGGGCAGATTTGAAAGTCTCTGTACTATCCCTGTTATTCCTTTTGCACCTTTCTGTGTATGTAACA TATGCTAGGATGAACCTAGAAAAACATATACTAGGATGGCTTCCATCCATACGAGAGCAAATCATGTGTCCCTTATTTTT CTGCAGAAGTACCACTTGAATCATCACTTTCGGATTCAGGACAAAGGCTTTGGGATCACTTCATCACTATGGGATAAAGT TTTTGGAACACTTCCTCAATCAAAAGCGGAAGCCAAAAGTATGTAA
CDS sequence (LotjaGi6g1v0268100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATATTCTGGAGGTATAGACTACAACTACAAGAACGAAAGTCTTGCTACACTCAGTGGTGTTGGTTAGACAGATTCTT GACACTCACAGTCTGGTGGGCAATTCCTGTCATTTGGTTGCCAGTTGTATGTTGGCTTGTATATAACTCTATTCAAAGGG GCCTCAATTGTCCTCATGCAGCTCTAATGGTGGTTCTTGGCATTTTCGTGTGGTCATTGCTGGAATACTCATTGCACCGT TTTCTTTTCCACATTAAAACAAAAACCTACTGGGGAAATACCATGCATTATCTTCTCCATGGCTGCCACCATAAGCATCC CATGGATGGCTTGAGACTTGTTTTCCCCCCTACTGCAACGGCTATATTATTGTTCCCGTTCTGGAACGTGGTGAAGCTCA TGTCCACCCCTTCAACTGCGCCTGCTTTACTTGGAGGTGGCTTATTGGGTTATGTAATGTATGATTGCACACATTATTAC TTGCACCATGCTCAGCCGAAGACTGAAATTCCCCGAAACCTCAAGAAGTACCACTTGAATCATCACTTTCGGATTCAGGA CAAAGGCTTTGGGATCACTTCATCACTATGGGATAAAGTTTTTGGAACACTTCCTCAATCAAAAGCGGAAGCCAAAAGTA TGTAA
Protein sequence (LotjaGi6g1v0268100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIFWRYRLQLQERKSCYTQWCWLDRFLTLTVWWAIPVIWLPVVCWLVYNSIQRGLNCPHAALMVVLGIFVWSLLEYSLHR FLFHIKTKTYWGNTMHYLLHGCHHKHPMDGLRLVFPPTATAILLFPFWNVVKLMSTPSTAPALLGGGLLGYVMYDCTHYY LHHAQPKTEIPRNLKKYHLNHHFRIQDKGFGITSSLWDKVFGTLPQSKAEAKSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 21 | 48 | 28 | - | – | |
| PANTHER | 25 | 213 | 189 | 7.2E-100 | – | |
| PANTHER | 25 | 213 | 189 | 7.2E-100 | – | |
| TMHMM | 29 | 51 | 23 | - | – | |
| Phobius | 49 | 59 | 11 | - | – | |
| Phobius | 60 | 78 | 19 | - | – | |
| TMHMM | 61 | 83 | 23 | - | – | |
| Pfam | 64 | 203 | 140 | 7.1E-16 | ||
| Phobius | 79 | 112 | 34 | - | – | |
| TMHMM | 111 | 130 | 20 | - | – | |
| Phobius | 113 | 131 | 19 | - | – | |
| Phobius | 132 | 142 | 11 | - | – | |
| TMHMM | 140 | 162 | 23 | - | – | |
| Phobius | 143 | 161 | 19 | - | – | |
| Phobius | 162 | 214 | 53 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
| Biological process | Lipid biosynthetic process | The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi6g1v0268100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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