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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0270900 |
| Transcript ID | LotjaGi6g1v0270900.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 40S ribosomal protein S24; TAIR: AT5G28060.1 Ribosomal protein S24e family protein; Swiss-Prot: sp|Q8LC83|RS242_ARATH 40S ribosomal protein S24-2; TrEMBL-Plants: tr|I3S194|I3S194_LOTJA 40S ribosomal protein S24; Found in the gene: LotjaGi6g1v0270900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:58519776..58525179) extracted from Lotus japonicus Gifu genome v1.2.
TGAGTAGCGTTGCAAAGAAATCCAAGCCTCGTATAATTGTGAGTAGCCCTGCAAGGAAATCCAAGTCCAAAGTCTTCGAA AACCACAAGAAACTCTTCTGAATCTGGAGCAGCAGTCGGAGGCTCCCACAAGAAACCAAGCTCCATTTCTTGCTCAGTTC AATTACATCACACCGAGATTTGATAATCTAAGCATAAATAATTCTGATGTAAGTAATGTACTTGTTTGATTTTGCATTTT TATTTTATAGTATCATTTATTCTCCTCTGAAATATTCGCTATGTTTGGCACAGCTAACTGATAAGCTAGTTGTGTGTGTT GCGTGCAGGAATCTTCATTTCCATTTCCTGCTAAGTTCAACAACATTGCAACACTATTCGATTTTGATGAGTCCTGGAGA TCGCCCTGGAGATTTCTTCGCAAACAAGCAGCGAAACAAATTAAACTTGTGAGTAGTTTATTGTTGCAATGCAAACAAAT CCAATTTTCGTTATATATCATTTATTTTTCTCTGAAATTTGTTTAAATCTGAAATTTGTTTAAATCCGAACAGGAGAATC TAAAACAAAAGATACTCTGGGGCATTCCTCGCCTTGCTGTGATTACATGCTATGCTTTCCAAATATACTTGGATGTTGAG ATTGTTCCTAATGATTCTAAGGCAAAAACAATATTGCAGTCATTCGCCGATAATGGGATTACTGGAAAATCGATCGCTGA AGCACTTGTGAAAGACGCAGAACAAGTATCTTTTTGTCCAATGTCCAAACTTGGATAACTAAAAAGCTCAACTTGTTTAT CATGTTAACAAATCACCTTAAATCAAAATTTACAACATTTAGTTATTATGGTGGTAACTAATGTAATATGTATTATCATG TAATGGGTAGCTTGAAGAGATGCCTTCTACAAGACTTTTTTTATATGACTAGCATAAACGTTCATGAAATTTTGTTACAA TCAATCAGGATTAAGTTCATAACTGCTTAGTGTGTGTTTGGATATTAGTTTCATGCAACATAAACTTTCATGTCAATTCA TAAGTATAGTTCTATTCTCTTTTTGTCTCCATGTGTCAATCCAATGTTAACTTATGTCTGTTTTGTACTAGTGACAACGG GATTCAAACATAGCCATAGCTTTTCTTTAAGTTCATCTTTAAATTGGGATAGCTCTTACTAAAACACCAAATGGAGCAAG CCTTAGGCAATACCCTCTAGGACTGATTGTGTTGTCCTCGAGCTTTTATTTTGAATTTGTTGATGAAATTTTGTAATCTG TACATGCAGGAGTACGGAATAACTCTTGAGTGTGATTATGATACTATGGTTTTTCCAAAAATCCCTTGCTGGTGATTCAT GCAGGAAGTTCCAAGTGAGAACAAGTGGATAAAGACGTGATGCGAGGAAAGGCCCCAATCTATGTACTGATTCACATGAA TATTTTGTCTTATAGCATCCAGTCTTTACATCGTCGGTGCATCAAACTTAAGAACAGCTAACGGAGTTTTGGTAGATATT TAAGTATTTAATCAAGAGTTTGATCATTGAGCGGTGTGTATGGGAAATGATTTGTTGGAGAGAGCTACCCACTTAAGGTA ATTTTATAGCCCTAAAGAGATTAATCTCATAAATGTCATTTGAGGATTCTTTTGTGCAACCAAAAAAATAAGCTAAAGAA AAACTCCATATGATTTTAGTTATACAATTTTATATAAATAAGTCGTCGAAAATAAAAGCTTCATGAATCATCCGCCACAA ATCATCCCCCACAATATGCCAATAGGACTTAAAGAAAATTGCCTGAAAGTCATCTGGTCGAGGAGCCTTGAAAGAGTCCA TAGTCCTAAGAGCGTGCCAAACCTTATCCTTTTTCACCGGCCTCAACAGACCTGCCACCGCTAGAGGCCCAAGGGTTGGG CAAGCCAACGAGCTCAACAACTCAGGTTGTACTTGCTCAGTAGCAAAAAAAAAATATCCTTGAAAAACTTCAACGCCTCA TCTTGCAGGACAACCTCAGAATCACACCACTTGCCATTGGGAAGACATAACGCATGGATCCGGTTACGCTTACGTCGCAC CACTGTAAGCGCATGAATTTTTTTGGAGTTTAATTATATCGCCATGCAATACATATTTCTCTCTTGATTTCTAGTACCAT TATAGTTCCTCTTGATAGAGGGTTTGGTCAAGTTGAAATTGCAAATCCTTGTGCAGCAGGGTTAACGCCGACGAGTCTAC CCTCTACATCTTGCTTTGTAGCCCTCAGATTCGAGCCTCCAACCATTTGTACCTAAACCGTTTCACTGGCCCTATCCCAA ATTCATTAGGCAAGTTGTCAAAGTTTGCGTTTCACGTGAGTATACTATTTTTTGTGCTAGATTTCATTATTCTTCTTCAA GTCATTTCTCTTAACATCAACACTCTCATGTGTTTTTTTTTTGTGACACTTGCAGTTTGTAGATGTTTCACAAACTGGAT AGTAAACTGCCATAAACTACAGGTGAAAACCATTGAAAAGAAACATAGCTCTTCCAACAGAGTTTTTTTCATTCACAATA CTCGAATCTGAGTCCTTAATTAAGAAGAACCAACCACCTGTTAATGAAAAGTCATATTCCAAGTAAGGTTTTCTCTTCTG CGATATGTCGCAAAAAGGGGGGGAGGGGTTCACATCTGTTAGAAATATAACCATTCATGTGTTGTTTACCCAACAATTTA AGCTTTTGAGATAAGTGGTTTGTGACATGGTATTAGAGCCTATCTCAGGTTTATTGTTTGGTCACCGAGATTGCTCTGAG ATATGTCCCATGATGAACAAAGATATGAGCATGATCAATGACCTCCGCGCTGCCGATGTTCCGGGTGTGAAGTCTCTCAT TGACTTATATGACTAATGAAGTGCATACATAGTTTCATTTATATAAATATTTGTTTTGTTATATTGTAATATAGACAAAG TTATAATAAGCCCAACCCATAATTCAAAACTCTAAGCCCAGCCCGTGTAACCTTATAGAAACCCTAATTTCACAATATGA ACTTCACTTTCTGACTGCGCAAGAGAGTGGTGAGTGTCTGAGAAGCGGAGCGGAGCCACTTGCAGAGACCTCACCGAGCT TCGAAAATGGCGGACAAAGCAGTCACCATCCGAACCCGCAAGTTCATGACCAACCGACTCCTCTCCAGGAAGCAATTCGT GAGTTTCCATTTCCCACAATTTCTACTGTTTCATGAAAATCGTGTATATTATTTGAATCATGTAAGGTTTTTGCTGAATT TGATTACCGATTCATGATAATCTCTGGATCTATCAACAATGTTTAAGTAGTTTTTTGCTGTATTTGATGATTTAGATCTC TTAATTATCTTCTGCCATATGTAATTTGATGGTGATTAGGGTTATTGCATTGCCAGTACCGGAAATTCGTATAACCTAAA TTTTTTCCCTGTTTACGTGTGTTGCAGATTGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCAAAGGTATTTTCGTT TTTTGTTTGATTTTAATATACATTTAGGCCCCTTTCGGAGAGTTTATTCAAGCTTATCTGATAGCATTAGTGCAAGTGTT TAGGAGCTTATGCAAACAGCTTATGGTCTACCATAAGCTGTTTTTAGCTTATTTTTATAAGATACTCAGATAGCTTATGA AAAAGAGCTTATGCCATAAGCGCTTAATGAAAATATAGCTTATTTTCAAATTTTTTATTTATTTTTAAATAGCTTATGAA TAAGCTGTTTTTCCAAAAGGGGCCTTATTCAGTTAAAATTTAAGAATTCAGGAGTTTATAGTGTCTTAACGTAGCAGTTG AATAAGTGATCAATTAGTTTTTAATATATGTTGTGTATTATGTCATGAAGGCTGAGCTTAAGGAGAAGCTGGCAAGGCTG TATGATGTGAAGGACCCTAACACTGTGTTTGTCTTCAAATTCCGGACACATTTTGGAGGTGGCAAATCCACTGGCTTTGG GTTGATCTATGATTCGCTTGAAAATGCTAAGAAGTATGAGCCCAAGTACAGGCTTATCAGGGTGAGTTTACAATTAGCAC AAGCCCCTTTTATAGATTTTGTTGTATGTTTTGATCAGCATGACATGATAGTGCTTCTTTGGGGCATGTTAATATTGCTT GTTGTCAAGCCTGAGCTCTTCATTTTTGTTGTTGTTGTTGCAAGTCTTGGGTTTCCGAAACATTATTTTAAGCCAGTTTA AGCATCAGGTTTTTTCTGAAGAGACCATGAAATGCTCTATGACTTGAAATGGTGTCTGCCATTGTTCTGTTTTTTAAATG ATATGATTTAATATCTTGCAATTTTTTGTATAGCAATCTTGTCATGTTTTACTCCCCTATCATGTGTTTTTGTCATCTGC CTTTGTTTTTATAATATGCTCATGCTGGCCATGGTTGTATTGTTTTGTATGAGCAAACTAACATGCATCTAAGTTTTTTG TTGCAAGGCATGTCAACTAAGTGTTTCTGAAACATTATTTTAACCCAGTTTGAGTATCAGGTTTTTTCATTAATTTTCTG AAGAAACGATGAAATGCTTTATGATTTGAAATGGTAGCCACCATTGTTCTGTTTTTTAAATGATATGCATTTTTCTAACT CAATCTTGTCATTTTTTATTCCCCTGTCATGTGATTTTGTCATCTGACCTTTCTTTTTATAATATCATTATGCTGGCCAT GGTTGTATTGTTTCGTGTGAGCAAACTAACATATGTATCTATTCCAGAATGGTCTTGACACTAAAGTTGAAAAGTCAAGG AAGCAACTGAAGGAGAGAAAGAACAGAGCTAAGAAAATCCGAGGAGTGAAGAAGGTAATCAAAGCTTACAATAGTTGATG GTTTCTTACCTTGTATTTAGGGTTTGTTGAATTAAATTGGGATGTGTTGTTTTTGCAGACAAAGGCTTCTGATGCTGCCA AGGGTGGAAAAAAGAAATGAGTTGATACATCCTGTTTCAGTTTTAGAGTCATTTTACTTTCGGTGTTCTGTAATAGCTAT TTCATCTTTGATATTACGCCGTTGTTTCTATGGAATGAGATATTTTGGTATTAGCGCGAGATCCATGTTTTTAATTTATA TTCGATTATAACTTGAGATTGGGAGTACTTATAGTGAACAATTTTGAGAACTCATTTTGCTTTCTGTACTTTCAAATATC AGTTTGATCTAAACGCCTGCCTTACTTGATTTCAATAGGATTGATTTGGGTTTAGATGGCAGTATACCATGGAAGCATAC TGTTAATTGTTTTACTCGTTTTATGCACATAGACAGAAGTGGTATTATGCTCATAGAAGTGTCCACACGAAGAGTAGCAC ATCAAATGTTTGGTTTGAGGTTTCTAAATGGGTAAAAACATTTG
CDS sequence (LotjaGi6g1v0270900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGACAAAGCAGTCACCATCCGAACCCGCAAGTTCATGACCAACCGACTCCTCTCCAGGAAGCAATTCATTGTTGA TGTTCTTCATCCAGGGAGGGCAAATGTTTCAAAGGCTGAGCTTAAGGAGAAGCTGGCAAGGCTGTATGATGTGAAGGACC CTAACACTGTGTTTGTCTTCAAATTCCGGACACATTTTGGAGGTGGCAAATCCACTGGCTTTGGGTTGATCTATGATTCG CTTGAAAATGCTAAGAAGTATGAGCCCAAGTACAGGCTTATCAGGAATGGTCTTGACACTAAAGTTGAAAAGTCAAGGAA GCAACTGAAGGAGAGAAAGAACAGAGCTAAGAAAATCCGAGGAGTGAAGAAGACAAAGGCTTCTGATGCTGCCAAGGGTG GAAAAAAGAAATGA
Protein sequence (LotjaGi6g1v0270900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDS LENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKASDAAKGGKKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 133 | 133 | 5.5E-63 | – | |
| PANTHER | 1 | 132 | 132 | 3.6E-83 | – | |
| PANTHER | 1 | 132 | 132 | 3.6E-83 | ||
| Hamap | 4 | 106 | 103 | 19.766 | ||
| SUPERFAMILY | 6 | 108 | 103 | 5.18E-38 | ||
| Pfam | 26 | 103 | 78 | 2.5E-37 | ||
| ProSitePatterns | 66 | 88 | 23 | - | ||
| MobiDBLite | 103 | 137 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi6g1v0270900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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