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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0271300 |
| Transcript ID | LotjaGi6g1v0271300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT2G01080.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9SRN1|NHL2_ARATH NDR1/HIN1-like protein 2; TrEMBL-Plants: tr|A0A067EH55|A0A067EH55_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0271300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:58564552..58565719) extracted from Lotus japonicus Gifu genome v1.2.
TTTGTTTCAAGTGCTAAATGTGAAAACTCCACCTTTTTTTTTTCTTTACAATCTGGTCATGTTTCACTCTTTCTCTCTTC ACCGTAAGTCCCTAGCACCGTTGCACCTTTGACCATGATCGAGACTCCGCAGATTCGCCGTTGCCGTCAACGAAGCCTGC TGCACCACTTAATAAATTAATAGTATGACTTAGCTTTAGTTACTAGCCAATTTACTTACTCAATAACACTACACTTTTTT TTACTCACTTACTTTCAATTATTGATATATATCTAAAACCATGATACAAGCTCCCTATTTATACGAAAGAAATGACAACT TGTTTTCATCCCTCGCAGAGCACAGCGCACACATTGTTCCCACACCCGCAGGCAACGCATTATTACGCCTTGCCGGTCAG TTCTATTCACGAGAGGAGAAAATGACCAGTAACCAACCGAACGGCGACCGACCACTGGCACCGGCGCCGGCCGCATTCTC AACTTACAACCCGAGGACACCTTCTCATGCATCTTCATCGGCGACGTCGTTGGAAGGCTGCTGCCGCTGCCTCTTCCTGC TATCATCGCTCCTCGCATTTCTTGCACTGTTGGTGGCGCTCGTCATCATCCTGGCGGTGTTGCCCAAGAAGCCACATGTC AATCTTCAGTTAGTGGAGGTTCAATACATGTCCATCACCGCCGATGACTCAACCGCCTCCATCAGCCTCACCCTTCACCT CATATTCGAAGCGGTTAACCCCAATAAGGTGGGGGTCACATACGGTGATTTCTGGTTCACCGTCATGTACCGTAGAATCC AGCTCGGCAAAGCCTCCATTCCGGGGTTCTTCCAGGAAGCTCACAATATGAAACAAGTGGCCGCCACCATCTCCATCAAT CGCATGAGTTTGCTTCAGGCTGACGCCGCTGAGTTGATCAGAAACGCTTCGGTTAACGACCGAGTCGACCTTCGGGTCTT GGGAGATGTCGGAGCTAAGATCCGGGTCTTGAATTTCGATGCTCCTGCTCTACAGGTTTCTGAGGATTGTGCTATAGTCA TCAGTCCAAGAAAGCAATCCATCACTTACCAGCAGTGTGTGGAATTAGGAATTAGGAATTAGGAATTTAAAAGAGTTTAT TGTATATCGGTTGATAAATGAAGTTACATAAAAAAATTGAGTTGCTGC
CDS sequence (LotjaGi6g1v0271300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATACAAGCTCCCTATTTATACGAAAGAAATGACAACTTGTTTTCATCCCTCGCAGAGCACAGCGCACACATTGTTCC CACACCCGCAGGCAACGCATTATTACGCCTTGCCGGTCAGTTCTATTCACGAGAGGAGAAAATGACCAGTAACCAACCGA ACGGCGACCGACCACTGGCACCGGCGCCGGCCGCATTCTCAACTTACAACCCGAGGACACCTTCTCATGCATCTTCATCG GCGACGTCGTTGGAAGGCTGCTGCCGCTGCCTCTTCCTGCTATCATCGCTCCTCGCATTTCTTGCACTGTTGGTGGCGCT CGTCATCATCCTGGCGGTGTTGCCCAAGAAGCCACATGTCAATCTTCAGTTAGTGGAGGTTCAATACATGTCCATCACCG CCGATGACTCAACCGCCTCCATCAGCCTCACCCTTCACCTCATATTCGAAGCGGTTAACCCCAATAAGGTGGGGGTCACA TACGGTGATTTCTGGTTCACCGTCATGTACCGTAGAATCCAGCTCGGCAAAGCCTCCATTCCGGGGTTCTTCCAGGAAGC TCACAATATGAAACAAGTGGCCGCCACCATCTCCATCAATCGCATGAGTTTGCTTCAGGCTGACGCCGCTGAGTTGATCA GAAACGCTTCGGTTAACGACCGAGTCGACCTTCGGGTCTTGGGAGATGTCGGAGCTAAGATCCGGGTCTTGAATTTCGAT GCTCCTGCTCTACAGGTTTCTGAGGATTGTGCTATAGTCATCAGTCCAAGAAAGCAATCCATCACTTACCAGCAGTGTGT GGAATTAGGAATTAGGAATTAG
Protein sequence (LotjaGi6g1v0271300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIQAPYLYERNDNLFSSLAEHSAHIVPTPAGNALLRLAGQFYSREEKMTSNQPNGDRPLAPAPAAFSTYNPRTPSHASSS ATSLEGCCRCLFLLSSLLAFLALLVALVIILAVLPKKPHVNLQLVEVQYMSITADDSTASISLTLHLIFEAVNPNKVGVT YGDFWFTVMYRRIQLGKASIPGFFQEAHNMKQVAATISINRMSLLQADAAELIRNASVNDRVDLRVLGDVGAKIRVLNFD APALQVSEDCAIVISPRKQSITYQQCVELGIRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 90 | 90 | - | – | |
| PANTHER | 50 | 266 | 217 | 1.5E-85 | – | |
| PANTHER | 50 | 266 | 217 | 1.5E-85 | – | |
| Phobius | 91 | 114 | 24 | - | – | |
| TMHMM | 91 | 113 | 23 | - | – | |
| SUPERFAMILY | 99 | 231 | 133 | 8.11E-7 | – | |
| Phobius | 115 | 273 | 159 | - | – | |
| Pfam | 152 | 231 | 80 | 4.0E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0271300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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