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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0271400 |
| Transcript ID | LotjaGi6g1v0271400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor GTPase-activating protein AGD12; TAIR: AT4G21160.1 Calcium-dependent ARF-type GTPase activating protein family; Swiss-Prot: sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating protein AGD12; TrEMBL-Plants: tr|G7IKU9|G7IKU9_MEDTR ADP-ribosylation factor GTPase-activating protein AGD10; Found in the gene: LotjaGi6g1v0271400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:58600396..58605673) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAATCTAATTGGATCATCATCGTAAACATCAAAATTCAACAACATCATCGTTTTACTTTTCTATCACCATTTCTATT CAAACGCAGCCATTTCGATTCCTTCTTTGAACTGGTAATTAATCCCTTCTCCCATGTTCATCCTGATCTCAATTCACCTT TTCTTCACATCTTGCTTGCAATTGTTGTAACAACCTTTTCATTTTCATTTTCGTTTCCCTCATTGGATTTCCGATTCCAA TTTCATGCACTGATCGCATATATCATTTTCCAATTCGTTTAGAAATCTTAATTTTTGTTATGCCTGGTTGCTGAGGAAAA AAACTATTGTGCTTGTTTGATTCCAAGTTCATTAGTTTTTGTTAGTAATTTGTGATTTTTGTATAGCTTGCCAAATGAAA ATGGAGCATACTGCATACCCTTTTGGCCCCTTTAGCTTGTTTTTGTTTTCAGGGGGGTTTTGTTTGGTTGGCACCATTTG TGCAGTGAAAATGAATTTGCTTGAACAAGTATTTGTTTCTTCCTTTGCAGATTGTTTTGCTTGACTATTATAGAGGTTGC AGCCTGGATGATTGTGAGCTTTATTAGCCTTTAAGCATGTCAATGAATAAATATAGACCGGAACTTGGAAGGCCTGCCTC AGGTAATCTTATGACACTTGATGTGGTAAATACATAAATGAGGTCTTTACAACTTAGAATATCACAGTTGCATCAGATGG CAAATTCTAATCAGTGGAAATGATTGGTCCTCACTCCAAATACATTATGAAAAATGACCATTAGTTCCTGTAATGTATTG TGCATGTATACAGTTTTTACTTCTTCTATTCACAACTTATTGCTAAACTTCATGCTACTTGATGAGCTATTTTTTGTTAA TGCTACACAACGCCCCAAAAATAAAGAAAGAACCATAATTTTGAAGAATAATGCAAGATTCTAGGGTGAATTGTTGTATA AGATAAAGAGATAGAGACCATTCATCTATCCATGTGTCAATAAGCATGCAAGATAGTTCTGGCGAAACATTTCTATGAAT CTTGCATTTTCCTTTCTGTTTTCTATTTTGCCCCCACCCTTACCAGGGAAAACTTATGGGCAGTTAGATGATTTTTCTTA CACTCCAATTAGGCTACCTTTTCCTTTAGATTTTTGATAATGTTAATTCTTAGGCGCATGTAAATCTTTAAGGGCCTCAG AAAATGACTATTGACTATATTTTGGTAGGATGATGATTGACAACTTTCTCTGGTTAAGAATTGCATACCAGATCAGGGGA TATTCTCTCTGCCTTTATATTAGTTGGGCTCTCAAGGTTATATTTCTATGGAGGGAATGGGATGGGAGGGTTAATTTTTC ATTTTTATGAAAGTTATGAAATAATTATAAATGAATAAGGGATGATTTGAAGGTTATATCCAATACCTCATACCTTCCCT AAAGAGTTCATTCTGAACTGTAAAAGCTTTAAGAAGCTTTAAAATGGCCATGAATTAGTACAAATAGGCTAGGGGGCTAT TTCAGAACAAATTTCATTTGTTTTTCTTGAGAAGTTGAATGATTGGCAGGTCTTTTACAGGTAGAAGAAGATTAAAAGAT TTATTACTTCAGAGCGATAATCGTTGTTGTGCTGATTGTAACGCTCCAGATCCTAAATGGGCGTAAGTGCTTCATTTTTG CACTCATAATGTTTGTGGCTTATACTATGGCATTATCATACCTTTTCTTTTTGGTGAACTGTTAGACAAACAGTTCACTT CATAAGTTTAAACTAAACCCAACTCAATTGCAATTGATTCGGTTATCAAAATTATCTTTTTCAACACAGAACCCAACCTC CAACCCGTTCACATCTGTTGTTTTACTTGCAAATCTATGCATTTTAGAATTTAGTACTTATAACTCTTTTTTACTCTTGC CATTTTTGCACTCATTTTGGCCTCCTCAACTATTATTAATTATAACCAAGTGTATTTGACCATGTTTACTATCCAATTTT GTTAATTTTTTTTTATTAAAGTGATTACTGAAGAATATAAAAATGTAATTTTCAAAAAGATTAAATATTAAATATAATAT CAATGTTGTGAAATGATTTAAATCTTGTCTAGAATAATCAAATGCAAGGAACATTTTTAACATGCAGTACTATAAAATTT GCAATTAATGAAGAGATAATATGAGAGGATAAAAACCGATAAAATGTAATTATATATTTCTTATCTTCACCCAATGACAT ACACCAAAAATCAGATTGATATGATATGGGTTGGCTGAAAAAAAAAAAAAAAAACTCATTGAATGTGACTTGTTTCGATT TTTATGATCGGTTTCGATTTTCTTCTATCTTCTCAACCCCGAAAGGAACCAACCATCAACACTCCTTGACGTTCCTTAAG CTTTTGGAAAGTAACTAGATGTAAACTATAATAAAGAAAAGAATGTGACTTGAATATCATTCTTTTAAACTGTGAATTCA TTTTGTTAACTGCATTTCAGGTCTGCCAATATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGG AACTCATATATCAAAGGTAAACAATTCACATTTACCAATATGAAAAAAGGTAAACCATTTACAGGTTGTCTCATTGTTGT GAAAGGCATTGCTGCCAATATCCACTTTACTTGAGATTATCATTTTTCTCTAAAGAGAAGTATTTGAAGTTCTGTCAAAA AAAAGTATTTGAAGTTCAAATATGTTCTCCATTTTTTTTTGTCTTCAGCAAATTGAAAGATATGTTTGGGTTGTTCATTT TCCAGAACTTGCACCAGAAATGGATTTGACGTGATCAGTGTTGGCATGGCGGAATTCTAGTAAGCCTGCCGGCTGATATT CCGCTTGAATCCGCCATCCTCCACCATTATTTGTCAAATATGGCCTGTTTTTTCCTTTTATGCTAACATGATGTCAAATC ATGTTCATGTAATGTGACCTAGTTTGTTTTCAGTGGGCTAAGAATGGCATTATTGCTGAAGTTAATTTATTTGTTTGACA ACATCATTTTTAACTTTCAGGTTTTGTCTGTGACATTGGATGACTGGTCAGAGGATGAAGTAGAAGCAATGATTGAAGTT GGAGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTACTTTCCTGAAGGCTATACAAAACCCGGACCAGATGCTAGTCA TGAGCAGCGTGCAAAGTTTATACGGTTAGACATGCTTTCTCATACACAATGCACTATCGGTTGTTAGCATCATTTGGTTC ATCTTGAAATTCTCATATCTCTGATCACCTTAAAGTAGGCAATGCGGAACATTGTTTATTCTTTCCCTCACTCTGATATT TGTTCAGCCCATTTGCTTAGTCATTTACTTTCTTGACTCCGCTACTCTTTCAACCAGTCAGTTGAAGGCCCTATTTAATT GACTGCCGTTTTAATTCTGACTATTTTTACTGCAGGTCAAAGTATGAGCTTCAAGAATTCTTGAAACCTAGTTTGCGCAT TGTGTCTGGAAAAAGCAGTCTAGGATCAAGTTCTGCCAAAAGTTTTATGGATAGTTTCAAAAGTAGTAGTACACAGAGAC TGGTAACTGTTATGTGTTTGTTCATCTGGTTATCTGACTACTTTCATGGGTGGGGGAAATTATTGGGACCAAATTTTTAG TTTTTTTTTTTTATAAACTGGGACCAAATTTTTAGTGAGCATCTTTTTGTGAAATAGATTTTCACTGGGTTGAATCATTG TTGTACCTGATTAAAGCTTTCTGAATTCTATTAAAAGATAATTTAATATAAGATAAGATGAGCTGAAGCATATTGCATTG GCCAACTTTACTATTTGGCAGCAACGGCAACACAGTTATTCTCATGAGTGATTTCCTTGGAATGTAACTGATATTGGTGG TAACAACAGGAAGGCATGGTAGAATTTATTGGATTGTTGAAGGTGAAAGTGATAAAAGGCACAAATTTAGCTATCAGAGA TATAAAGACAAGCGACCCGTATGTTGTTTTGAGCCTTGGCCAACAGGTTGGTTGTTTTCCTGTCAGTATATCATTCTTGG GGAACCTGTTGCTCTTTATCTTTTATTATAATTGAAAAATCATAAATGGTGATGATTTTCTTTCTGAAATTGATTTGGTG CTATGGCCTGCAGACTGTCCAGACAGCAGTAGTGAAGAGCAACTTGAATCCAGTCTGGAATGAGGAACATATGCTGTCTG TTCCCGAGGAGTATGGACAACTGAAATTGGTATGGTTGAATTTTGACGTTGTGGATAACATGCATTAACTTCTATGTGTT TCCTATTAAATTGAGCCAAATCTAGCTGCCTGTGTTTGTGTTGTTTTTCTGTGTGTGCGAGTGGATGAGAAAGAAAATAG ATTATTTCTGATATGAGAATATGACATCTGGCTATGTCGCAGAAAGTATATGATCACGACACATTTTCTGCTGATGATAT AATGGGAGAAGCGGACATTGATCTTCAGTCGCTGATAACATCTGCTATGGCGTTTGGAGATGCTGGAATGTTTGGCGATA TGCAGATAGGAAAATGGTTGAAATCGGATGACAATGCACTGATTGAGGATAGTACAGTCAATATTGATGATGGTAAGGTT AAACAAAATATGACACTCAAGCTCCAGAATGTTGAATCTGGAGAAATAGATTTAGAGCTCGAGTGGATTCCTCTTGATCA ATAGCTACTTAACTGCTGGTAGCCTATCCATTCTCTCAATGAAATCATTGTAATTCTTTCTCTTATACTTTTAGCTCATT ATCCTTGAGAAATAAGTTAATCTCTATCTTGTTCTTCATTTAATTTATGTCTGTTAAATTATTTAGCCAAACATTGAATA TGAAAAGAGTGAGAGATCATAATAGTTTTTTGTAATTTGTTCATTATCACTTAATTACTTATGTGTGCAGCAAATAAGGA ATATAACATCTCCACAGCAAAGAATTTGTTCATTATTAGATAATTACTTATGTGTGCAGCAAATGCCACCTTGCAAGTGT ACATGTCCATTGGTTCAAGAAAAAGTGAAAACTATCATTTGCTATAACTATATTATAGCATGTGTTGATCAGTTTCTCTT CCTTTCGAATTAATTTTATATTATTGTATTTGTATATTGAGAGGTGGAGAAACAACAGTGAGATTGGCTGGAATATATAT GGGCCAACATGTACAGACGTGATATACTTTTATTTAGTACAAGTAGCGTGCTTTTGCTTGTTGGAAATTCAGAAAGCG
CDS sequence (LotjaGi6g1v0271400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAATGAATAAATATAGACCGGAACTTGGAAGGCCTGCCTCAGGTAGAAGAAGATTAAAAGATTTATTACTTCAGAG CGATAATCGTTGTTGTGCTGATTGTAACGCTCCAGATCCTAAATGGGCGTCTGCCAATATTGGAGTTTTTATATGCTTAA AATGTTGTGGTGTGCACAGAAGCCTTGGAACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGACTGGTCAGAGGAT GAAGTAGAAGCAATGATTGAAGTTGGAGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTACTTTCCTGAAGGCTATAC AAAACCCGGACCAGATGCTAGTCATGAGCAGCGTGCAAAGTTTATACGGTCAAAGTATGAGCTTCAAGAATTCTTGAAAC CTAGTTTGCGCATTGTGTCTGGAAAAAGCAGTCTAGGATCAAGTTCTGCCAAAAGTTTTATGGATAGTTTCAAAAGTAGT AGTACACAGAGACTGGAAGGCATGGTAGAATTTATTGGATTGTTGAAGGTGAAAGTGATAAAAGGCACAAATTTAGCTAT CAGAGATATAAAGACAAGCGACCCGTATGTTGTTTTGAGCCTTGGCCAACAGACTGTCCAGACAGCAGTAGTGAAGAGCA ACTTGAATCCAGTCTGGAATGAGGAACATATGCTGTCTGTTCCCGAGGAGTATGGACAACTGAAATTGAAAGTATATGAT CACGACACATTTTCTGCTGATGATATAATGGGAGAAGCGGACATTGATCTTCAGTCGCTGATAACATCTGCTATGGCGTT TGGAGATGCTGGAATGTTTGGCGATATGCAGATAGGAAAATGGTTGAAATCGGATGACAATGCACTGATTGAGGATAGTA CAGTCAATATTGATGATGGTAAGGTTAAACAAAATATGACACTCAAGCTCCAGAATGTTGAATCTGGAGAAATAGATTTA GAGCTCGAGTGGATTCCTCTTGATCAATAG
Protein sequence (LotjaGi6g1v0271400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMNKYRPELGRPASGRRRLKDLLLQSDNRCCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDDWSED EVEAMIEVGGNASANSIYEAYFPEGYTKPGPDASHEQRAKFIRSKYELQEFLKPSLRIVSGKSSLGSSSAKSFMDSFKSS STQRLEGMVEFIGLLKVKVIKGTNLAIRDIKTSDPYVVLSLGQQTVQTAVVKSNLNPVWNEEHMLSVPEEYGQLKLKVYD HDTFSADDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNALIEDSTVNIDDGKVKQNMTLKLQNVESGEIDL ELEWIPLDQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 138 | 135 | 4.6E-48 | ||
| PANTHER | 9 | 329 | 321 | 1.8E-211 | – | |
| PANTHER | 9 | 329 | 321 | 1.8E-211 | – | |
| SUPERFAMILY | 17 | 134 | 118 | 6.28E-41 | ||
| ProSiteProfiles | 17 | 131 | 115 | 26.839 | ||
| SMART | 17 | 139 | 123 | 1.4E-45 | ||
| Pfam | 18 | 133 | 116 | 4.2E-38 | ||
| CDD | 20 | 126 | 107 | 3.38215E-60 | – | |
| PRINTS | 29 | 48 | 20 | 1.2E-20 | ||
| PRINTS | 48 | 65 | 18 | 1.2E-20 | ||
| PRINTS | 69 | 90 | 22 | 1.2E-20 | ||
| Gene3D | 170 | 329 | 160 | 2.8E-31 | ||
| SUPERFAMILY | 171 | 327 | 157 | 3.59E-29 | – | |
| CDD | 172 | 316 | 145 | 1.07857E-74 | – | |
| Pfam | 173 | 263 | 91 | 2.9E-25 | ||
| SMART | 174 | 269 | 96 | 9.0E-20 | ||
| ProSiteProfiles | 175 | 254 | 80 | 16.169 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activator activity | Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP. |
Expression pattern of LotjaGi6g1v0271400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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