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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0271400 |
| Transcript ID | LotjaGi6g1v0271400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor GTPase-activating protein AGD12; TAIR: AT4G21160.1 Calcium-dependent ARF-type GTPase activating protein family; Swiss-Prot: sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating protein AGD12; TrEMBL-Plants: tr|A0A151T618|A0A151T618_CAJCA ADP-ribosylation factor GTPase-activating protein AGD12; Found in the gene: LotjaGi6g1v0271400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:58601926..58605119) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCATTTGTTTTTCTTGAGAAGTTGAATGATTGGCAGGTCTTTTACAGGTAGAAGAAGATTAAAAGATTTATTACTTC AGAGCGATAATCGTTGTTGTGCTGATTGTAACGCTCCAGATCCTAAATGGGCGTAAGTGCTTCATTTTTGCACTCATAAT GTTTGTGGCTTATACTATGGCATTATCATACCTTTTCTTTTTGGTGAACTGTTAGACAAACAGTTCACTTCATAAGTTTA AACTAAACCCAACTCAATTGCAATTGATTCGGTTATCAAAATTATCTTTTTCAACACAGAACCCAACCTCCAACCCGTTC ACATCTGTTGTTTTACTTGCAAATCTATGCATTTTAGAATTTAGTACTTATAACTCTTTTTTACTCTTGCCATTTTTGCA CTCATTTTGGCCTCCTCAACTATTATTAATTATAACCAAGTGTATTTGACCATGTTTACTATCCAATTTTGTTAATTTTT TTTTATTAAAGTGATTACTGAAGAATATAAAAATGTAATTTTCAAAAAGATTAAATATTAAATATAATATCAATGTTGTG AAATGATTTAAATCTTGTCTAGAATAATCAAATGCAAGGAACATTTTTAACATGCAGTACTATAAAATTTGCAATTAATG AAGAGATAATATGAGAGGATAAAAACCGATAAAATGTAATTATATATTTCTTATCTTCACCCAATGACATACACCAAAAA TCAGATTGATATGATATGGGTTGGCTGAAAAAAAAAAAAAAAAACTCATTGAATGTGACTTGTTTCGATTTTTATGATCG GTTTCGATTTTCTTCTATCTTCTCAACCCCGAAAGGAACCAACCATCAACACTCCTTGACGTTCCTTAAGCTTTTGGAAA GTAACTAGATGTAAACTATAATAAAGAAAAGAATGTGACTTGAATATCATTCTTTTAAACTGTGAATTCATTTTGTTAAC TGCATTTCAGGTCTGCCAATATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGAACTCATATA TCAAAGGTAAACAATTCACATTTACCAATATGAAAAAAGGTAAACCATTTACAGGTTGTCTCATTGTTGTGAAAGGCATT GCTGCCAATATCCACTTTACTTGAGATTATCATTTTTCTCTAAAGAGAAGTATTTGAAGTTCTGTCAAAAAAAAGTATTT GAAGTTCAAATATGTTCTCCATTTTTTTTTGTCTTCAGCAAATTGAAAGATATGTTTGGGTTGTTCATTTTCCAGAACTT GCACCAGAAATGGATTTGACGTGATCAGTGTTGGCATGGCGGAATTCTAGTAAGCCTGCCGGCTGATATTCCGCTTGAAT CCGCCATCCTCCACCATTATTTGTCAAATATGGCCTGTTTTTTCCTTTTATGCTAACATGATGTCAAATCATGTTCATGT AATGTGACCTAGTTTGTTTTCAGTGGGCTAAGAATGGCATTATTGCTGAAGTTAATTTATTTGTTTGACAACATCATTTT TAACTTTCAGGTTTTGTCTGTGACATTGGATGACTGGTCAGAGGATGAAGTAGAAGCAATGATTGAAGTTGGAGGAAATG CTTCTGCTAATTCAATTTATGAGGCTTACTTTCCTGAAGGCTATACAAAACCCGGACCAGATGCTAGTCATGAGCAGCGT GCAAAGTTTATACGGTTAGACATGCTTTCTCATACACAATGCACTATCGGTTGTTAGCATCATTTGGTTCATCTTGAAAT TCTCATATCTCTGATCACCTTAAAGTAGGCAATGCGGAACATTGTTTATTCTTTCCCTCACTCTGATATTTGTTCAGCCC ATTTGCTTAGTCATTTACTTTCTTGACTCCGCTACTCTTTCAACCAGTCAGTTGAAGGCCCTATTTAATTGACTGCCGTT TTAATTCTGACTATTTTTACTGCAGGTCAAAGTATGAGCTTCAAGAATTCTTGAAACCTAGTTTGCGCATTGTGTCTGGA AAAAGCAGTCTAGGATCAAGTTCTGCCAAAAGTTTTATGGATAGTTTCAAAAGTAGTAGTACACAGAGACTGGTAACTGT TATGTGTTTGTTCATCTGGTTATCTGACTACTTTCATGGGTGGGGGAAATTATTGGGACCAAATTTTTAGTTTTTTTTTT TTATAAACTGGGACCAAATTTTTAGTGAGCATCTTTTTGTGAAATAGATTTTCACTGGGTTGAATCATTGTTGTACCTGA TTAAAGCTTTCTGAATTCTATTAAAAGATAATTTAATATAAGATAAGATGAGCTGAAGCATATTGCATTGGCCAACTTTA CTATTTGGCAGCAACGGCAACACAGTTATTCTCATGAGTGATTTCCTTGGAATGTAACTGATATTGGTGGTAACAACAGG AAGGCATGGTAGAATTTATTGGATTGTTGAAGGTGAAAGTGATAAAAGGCACAAATTTAGCTATCAGAGATATAAAGACA AGCGACCCGTATGTTGTTTTGAGCCTTGGCCAACAGGTTGGTTGTTTTCCTGTCAGTATATCATTCTTGGGGAACCTGTT GCTCTTTATCTTTTATTATAATTGAAAAATCATAAATGGTGATGATTTTCTTTCTGAAATTGATTTGGTGCTATGGCCTG CAGACTGTCCAGACAGCAGTAGTGAAGAGCAACTTGAATCCAGTCTGGAATGAGGAACATATGCTGTCTGTTCCCGAGGA GTATGGACAACTGAAATTGGTATGGTTGAATTTTGACGTTGTGGATAACATGCATTAACTTCTATGTGTTTCCTATTAAA TTGAGCCAAATCTAGCTGCCTGTGTTTGTGTTGTTTTTCTGTGTGTGCGAGTGGATGAGAAAGAAAATAGATTATTTCTG ATATGAGAATATGACATCTGGCTATGTCGCAGAAAGTATATGATCACGACACATTTTCTGCTGATGATATAATGGGAGAA GCGGACATTGATCTTCAGTCGCTGATAACATCTGCTATGGCGTTTGGAGATGCTGGAATGTTTGGCGATATGCAGATAGG AAAATGGTTGAAATCGGATGACAATGCACTGATTGAGGATAGTACAGTCAATATTGATGATGGTAAGGTTAAACAAAATA TGACACTCAAGCTCCAGAATGTTGAATCTGGAGAAATAGATTTAGAGCTCGAGTGGATTCCTCTTGATCAATAG
CDS sequence (LotjaGi6g1v0271400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGGCAGGTCTTTTACAGGTAGAAGAAGATTAAAAGATTTATTACTTCAGAGCGATAATCGTTGTTGTGCTGATTG TAACGCTCCAGATCCTAAATGGGCGTCTGCCAATATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCC TTGGAACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGACTGGTCAGAGGATGAAGTAGAAGCAATGATTGAAGTT GGAGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTACTTTCCTGAAGGCTATACAAAACCCGGACCAGATGCTAGTCA TGAGCAGCGTGCAAAGTTTATACGGTCAAAGTATGAGCTTCAAGAATTCTTGAAACCTAGTTTGCGCATTGTGTCTGGAA AAAGCAGTCTAGGATCAAGTTCTGCCAAAAGTTTTATGGATAGTTTCAAAAGTAGTAGTACACAGAGACTGGAAGGCATG GTAGAATTTATTGGATTGTTGAAGGTGAAAGTGATAAAAGGCACAAATTTAGCTATCAGAGATATAAAGACAAGCGACCC GTATGTTGTTTTGAGCCTTGGCCAACAGACTGTCCAGACAGCAGTAGTGAAGAGCAACTTGAATCCAGTCTGGAATGAGG AACATATGCTGTCTGTTCCCGAGGAGTATGGACAACTGAAATTGAAAGTATATGATCACGACACATTTTCTGCTGATGAT ATAATGGGAGAAGCGGACATTGATCTTCAGTCGCTGATAACATCTGCTATGGCGTTTGGAGATGCTGGAATGTTTGGCGA TATGCAGATAGGAAAATGGTTGAAATCGGATGACAATGCACTGATTGAGGATAGTACAGTCAATATTGATGATGGTAAGG TTAAACAAAATATGACACTCAAGCTCCAGAATGTTGAATCTGGAGAAATAGATTTAGAGCTCGAGTGGATTCCTCTTGAT CAATAG
Protein sequence (LotjaGi6g1v0271400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGRSFTGRRRLKDLLLQSDNRCCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDDWSEDEVEAMIEV GGNASANSIYEAYFPEGYTKPGPDASHEQRAKFIRSKYELQEFLKPSLRIVSGKSSLGSSSAKSFMDSFKSSSTQRLEGM VEFIGLLKVKVIKGTNLAIRDIKTSDPYVVLSLGQQTVQTAVVKSNLNPVWNEEHMLSVPEEYGQLKLKVYDHDTFSADD IMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNALIEDSTVNIDDGKVKQNMTLKLQNVESGEIDLELEWIPLD Q
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 321 | 320 | 3.3E-208 | – | |
| PANTHER | 2 | 321 | 320 | 3.3E-208 | – | |
| Gene3D | 3 | 130 | 128 | 6.1E-48 | ||
| SUPERFAMILY | 9 | 126 | 118 | 5.75E-41 | ||
| ProSiteProfiles | 9 | 123 | 115 | 26.839 | ||
| SMART | 9 | 131 | 123 | 1.4E-45 | ||
| Pfam | 10 | 125 | 116 | 4.0E-38 | ||
| CDD | 12 | 118 | 107 | 2.51685E-60 | – | |
| PRINTS | 21 | 40 | 20 | 1.1E-20 | ||
| PRINTS | 40 | 57 | 18 | 1.1E-20 | ||
| PRINTS | 61 | 82 | 22 | 1.1E-20 | ||
| Gene3D | 162 | 321 | 160 | 2.6E-31 | ||
| SUPERFAMILY | 163 | 319 | 157 | 3.43E-29 | – | |
| CDD | 164 | 308 | 145 | 1.05535E-74 | – | |
| Pfam | 165 | 255 | 91 | 2.8E-25 | ||
| SMART | 166 | 261 | 96 | 9.0E-20 | ||
| ProSiteProfiles | 167 | 246 | 80 | 16.169 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activator activity | Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP. |
Expression pattern of LotjaGi6g1v0271400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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