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LotjaGi6g1v0275000.1

Overview

Field Value
Gene ID LotjaGi6g1v0275000
Transcript ID LotjaGi6g1v0275000.1
Lotus japonicus genome version Gifu v1.2
Description Tubulin folding cofactor E; TAIR: AT1G71440.1 tubulin folding cofactor E / Pfifferling (PFI); Swiss-Prot: sp|Q8GRL7|TBCE_ARATH Tubulin-folding cofactor E; TrEMBL-Plants: tr|A0A0B2QNG8|A0A0B2QNG8_GLYSO Tubulin-specific chaperone E; Found in the gene: LotjaGi6g1v0275000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:59175042..59183130) extracted from Lotus japonicus Gifu genome v1.2.

CCCCGAACCCCACTCCCCTGTCTTCTACTATCCCTCCCTCTCACCGTTTCAACCTCCCCCCTCTCTGTCTCTCTCTCCAC CACCACTCACACCACCGCCGTTCCCAATTCCCCTGACTCCTCCACCTCCCTCTCGCTGTTGCAATGCAGGATTCCCCAAA GCCAAGGCAAGAATTCCGGGTCGGCCAACGAGTGCATGCATCTGGTGATTCACGGAGAATTGGCACAGTGAAGTATGTAG GGCCAGTAGAAGGCTATTCAGACATCTGGGTCGGAGTTGAATGGGACAATGGTGAAGGCAAACATGATGGATCCATCAAT GGTGTCAGGTACTTTCATGCTAAGTCTGAAAAATCAGCATCGTTTGTTCGTGCCCAGAATCTTAACCAAGGGATTTCATT GCTCGAAGCTCTTGAAACTAGATATCGAAGTCATTCTACCAAGGATGAAGAAGGTTTGTCTCTGACTTTTTCATTCATTT GTAGTTAAATTGTTCAGTCACAAATTATCATCAAAATCATATAAATAAGTGTGTAAAGTATGCTTTTTGAGAACACTATT TTTACTGTTTAAGGAAATTTGATTGAGAAAACTTGGTATTTCTAAATGGGTTTGTCAAGAATGCATTTTCGATTAGGAAA GTGAGTTAGGAAGATTGATTCACTAGAAGAGTCTAAAACCCAATCTCTGTATGAATTTGCTAAAGAATTGATAAGATTTG ATCAAATGCAAAAGGGGCTGTAATTCTCTATCAATTCTGTTACTCAAACTTGTTTGAAAGTGGAAATCTCAATCTAAATG AGGACCCTGAATAGAATAAAGAAGTTTTTAATGGGCAAATGCAAAGTAGAGAGACAATAGTGGTAGAGAAACCTCTAAGA AATGTACAACTTGGGTATTATTCAATGGTTATTTTGAACTGTGTAATCCTACTACCTATTGAAGTTTCTATTTCCTGTCT TAGACATTGATTTAACATGAAGCCTCAGGACCAATTTATATTCACTATTCAGTTTACAATTAAGAAGTTATTTGCTATCC TGTACAAACTTTTTTCATAATGTTCTATAAAATTTTGTTAGGCATGTTACTCTGACAACCTTGAGCATAATCCATGATTT TCCTCTTTTTTGTTTTTTCAGATGAAATGTATGTCCTTTCAACTAGCAACAAGCGAGTATCTGTTCAATTTTTGGGTCAA AATCAAATTCATGACAAGCTTAGTCGATTTGAGGAGTTAACCGCCATATCATTGTCATTTATGGGCATTAGTTCCCCAGG GGATCCATGTCATATTAATACGACAGTGCCAAGTGAGCTTGATTCCAGAACACCCTTATTTCTTTGTTTATATAAAAAGA AATGAAACATCGATCCAGTAGTATGGTATATTTTTGTTGGGGATGAAGTTTAGTATTATGAATTGGATGCTTTTGCCTGA AGTTTTTATTTATATTTTTTGAGCTTAGCTGCTTCTACCTGAAGTTATAATTGGAAACTTTGTTCCTTTGATATCTGCTG CCATCTGTATAAGGCAATTTGAACATAGGTAATTACTTCCTTTGGAATCTTCTTTTTTTTACAAAATCTATGTGCTGAAG ACACACTTTTTGTTTATTAATAGATATAAAAGCACTTGACCTGTCTGGGAACCTGCTCTCGGAGTGGAAGGTATGTCTTT GTGGACTGTTCTATCTTGGCCACTACTGCATCTTTGAATCTGCTTATTTTTAACGTGCCACACAAATCTTACGCGTAACC TTGATTTATTAAAATTGCAGAGCAGATCTTTATCTTTTGCTAATCTCAAACAGCTTTTTTGGTTGGGATTCCTGTATTAT GAATTTCTCCTTTATTTTTTAATAATTCCATTATCGTTATTAGAACCAGGATTCAGTTATTTATATCACATTATATTGGG AGATCATTTGATTTATTTATTTTTTTGGGTACATTTGTGACATTGATTGAGTGTCCTGTGGCCTTCTGTAAACTACCTTA GCCCTCCTCACTTATCTACTCCTAGTGACTTTTTCTTCTTTCTTTGTTACTATTCTGATAGTGCTACAGAAACCACTCTG CATGGCCAACTATCATGTCAGTGATTAATTGTCAGCATTGCCATTTAGACTCTTCTTGATTAACCTATTTGCAGGATGTT GGGACAATTTGTGAACAGTTACCTGCTCTGGGGACTCTCAACTTATCTTACAACTTAATGACACCATATAAATCTGAGCT TCCATTACTGAAAAGCATCCGTGTTCTGGTTTTAAATAATACTGGTGTAGATTGGGAGCAGGTTCCTTTTTGTCTTTCGT CAACTGTTGTCGCTTGCTTAGATTTCCCCAATGTTTTTAATTAGGAATTGCTAAATATTGCTTTTTTTACTGGACAGGTT GAATTGCTTAGACAACCACTGATGGCAATCGAAGAGCTACATATTATGGGAAACAATATAAGCAGAATACTGGTATGTTG TCTTTGCTTCAACATGGTTGTTAAATATCGTATTAGGGGCTAACTTAGATAGCAGTTTGATTAACATAGTAAACCACCAC TACCTTTTAATTTAAGTAACTCAGAACCTGAATTTTCGTTGTTCAATATGGGGCATCCCGCATCCGGTCAATTGACCTCC CCCCCTCTTCCATCCTAAATAAAGTATAATAATTAAAAAAAAAACCATCCTGGTCCACCATACCACATAATTTCCCCAAA TGAAAGTAGTACATGTAAGCCTAAAATAAATAGGGAATAGCATTGTGGATATAATCTTCACTTTTCACCACTTTTCAGCC TTTACGTTTCCCTTTCGACTCAAAGATATGCTGTTTTATAGGTATTAGGTAATGGGAGCTAAAGGGTTAAAAAAAAATGT ATGTAATTAGAGGGAAGCTAACAAAGATGTTTTTTATGTGGTTAACGTTTGTTTTTAATTTTATGGTAGCTGTTGCAGTG ATATTTGTGTAATGGTAATGGGATGCTTTGTTGAATGCACTTTTCCTTTTCTGGCCCTGACTTGGATCTGCTACACTTTC TGTTTTGACATTAAAAATATTGGAACTTTATCAATAGTTTAGGTCTGTATGTAGGTTTTCTCTTTTATATTTAATTTAAT GTTTCTCTCCAACTTCTTATCAGCTCTATAAAATAAATTACAAACATATTTAAGCCTTCTAATTTTCCTTTTCTCTTCAG CCTATGACATCCTCTATGGTTCAAGGATTTGATTCTTTGCGGCTGTTGAATTTGGAAGACAATTGTATAGCTGAATGGAA AGAAATCATGAAGCTTTCTCAGCTAAGATGGTTGGTAAAGGAAAAACTCTTATCTAGTTCTACAACACAATCTTGACTCC AGTTTAGGCTGATGCCATTTTAACTTTTAGCCTCTTACTTCAATAATCAAATCTGCTTTCATGTTGATCATACCGAAAAT TACCACTGATTACTTAATCTAACAACTTAACATTTTAGCTAACCACTTCAGCATGATTGTGAAGGTGTGTGATTAAAGTG AGATGTGGTTAAAATCATAGGCTGTATCACTGGAAGTTGTAGTTGAATTTTAGAACTGGCCTTAATATTCAGTTCTCTTC CCATTTCTGAATTTCCTTCCCTAAAAAAATGCCTCTGCTTTTGGTTAGATTTGGTTTTTAAGTCTGTTGATTTGATAAAT TTTCGTTGCTGGTATGTTTTGTTTCAGTTTGGAGCAGCTTTATTTGAACAAGAATTGTTTGAGTTCTCTCTTTTATCCCG ATAATTATTCGCTGTATGAATCGGAAGTTAAGTGCTGCAAGCCTTTTCAAAATTTGCGCTGTCTTCTATTGGGTAATATA ATAGTAATACTATTCCTCTTGAAATGATCTCCACACTGCAATGAGATGTGGATTGCAGATCTCAGCTGACTTCTTCCTTT CTCCATTCAGGTGACAACAACATTAGTGATCTGGCCTCGGTTGATTCATTAAACTCATTTCCTAACTTGGTGGTGAGGTT TATACTGTGAAGTATCTATTATGCTTACATATTTTATTTTAATTCTTGACTTAGCATGGCATGGATTCAGTACTGTATCT TTTATGAATGGATCTAGGACCATGCACTGTTGTATCAATAATCCAATTTAGAAGATAATTCAAATTTATTGAGAGCTACA CTTGCCTAAGTATTTGTGTGCATGTCTCCCATTTCTTCATATAATTTTTTTTTTTATATTACCTCTCCTGGTTCTTGTAT AATTTCTCAGGTATATATTCTACTTAATTACTCACACTAGAACTCATATTGCCATTTTTGCCCAACCTTAATGTCTGCAT GAGGTTCATCTTCTGGTTTAGAGATTGAATTAAGAACCCAGTTCTTAGAGAAGGTTATGGCTCCTATACCAATGAAAAAG AAAGTCAGTTATGAATGGGCTATGAATAACTTTTTACTGTACTCTACTTTATATTAAAGAATAGTGAACTACAGGGGAAG ACAGCTGGATGACCTTTTAATGTGTGACAAGAAAAAGAGTAACCAGGAATTAGTACATACTACATAGACATAGAAGCAAA GCAAATCTTCCTAATCTCCTCCCCCCCCCCCCCCAAAAAAAAATGTTTATAACACTTCTCACACAGTCACACGCAGACAG TCGCAAGTATTTATTCTTTACTGCACTCTGCTTCGTTACAAGTTTAATTTGAGAAAGAAATTGATCTTTTTTGTACGACG TTTCTTGGGTCTGTTATGCTGCATGCTACATATGCTTAAGCAAAGGGCCTTTATAAGCTTACTTTGAGAAAGAAATTAAT CTGTTTATTGCAAATTTTATTTCTATATCACTACATGGACTATTCTTTCCTTTGTTTCCCTTAATATTTCCTCTTTCTAT GTTTCTCTTTTTACTGTTTTATTTGCTTGTGCATATTTTTAAGAATAATAGCTATCTTCTATCCTAATTATTTATCTTTA ATCTTCAATTACAAAAAAAGGATATCAGGCTATCTGGAAACCCAATAACTGATTCAACGAGAGGTGGAATTCCAAGATTT GTTTTGATTGCTCGATTAGCCAAAATTCAGATATTGAATGGGAGTGAGGTATAATGAAGATCTCTGTTGCATATTTGTGT CTGTTGTACACTCTTTTACCAAATGTAATGTTTTCACATCTAATTAACCGTTCAGGTTACCCCTCGTGAAAGGAAGGACT CTGAGATTAGGTATATTATTCTAAATTTTTGTGCTTTATATATATACTTTTGGCAACTGAAACATAATTCATAATAACAA TATCTGTGTATTGTCTGAGGCATTTTACCTTGTATTGATTTAGTAGTATTCTTGATTTTATTGTATCAATCATTTTAATT GATGTCTTGCTCCTATTTTTTTCCAATGATTTAGTTTTGATGTTTGGTATATGCTTTATTTGAACTAAAGTTTCCGCATT GGAATATTGGCTTTTGTACCATTTTGCAATGAAATTCCATTCCTTTCTTTGTCATTCCATTGTGATGAATGGCCTTTTTT AACATTGTGTGCAAATGTGCTTCTTCCTTCTTGAGTCAAGGATTGTTGTGTAAAATAATCCAACCTATTTCTAGCATTCA CTGTTATGAAGTAAAACTTCTGTTGTTATTTCCTCTTGAAGGACTGGCCATTAAACCCTTTTGTATTTTATCTATCTTTA TACATTAGATAACATGTGTTTTCAATCATACTTGTCTTTGGGTTGTTGGTATAATTGAAGTTTCATGCCTTGTAAGTGTT TAATATTGTATTTTATGCAGGTATGTTCGTCTTGTGATGTCAAGATTGCATGCCAGTCCTGGAGAAATCAAACAACATCC CAGGTAAAAGTTCATGCGAGTTTGTGGTTGTTGGAATCTTTGTTCTATGATCAGTGTTCATTATATGTGTTATGATGGCT AGAGAAAGCTGGATGAAGATGTTATTGAGAAATCCGTAACTCTGGATTTTGATTGGGAGTGACTATGTATGAATGGTTAA GGAGAATAGGTTAGAAACTGAAAGAAGGATTTACCAGAAATATGCCAAAGGAACTTAATTTACTATTTTCTGGCCCAACT TGCTAACTCCAGGCTCTAATATTTTGAAGGTACTGACATTTTCTAGTAACCTTCTGAGGCCAAAGTCTAGAAATTATAAG TCGAACATAATTTCAAAAGATTTGATACTATATTAAGAAATAGAAATTAACTAGAGATTAAAATGATGATAAAATCTTTA ACTTCAAACTTTAAGACAGATAAGGTGAATTTTAAAGACTACTGCAAGTAGGAAATAAGATAAAATGAGAGGCCTAGGAA GAAACTCACCCACCTCGGAGAATTAGCAGTTTTTACAGTGTTATTTTTTCTTTTGAATTCACGTATTAAGCAGCATACAT GAGCTAAATAGTCTATACGAGTACATATTTAATATGCAGATAGAGTATTTAAATATTTTAGTCCACATTGTTTTCAAATA TATTTTACCTGCCATGCCCCATGGAGCTGGGGTCTTCCCTAAGGAAGCTCCAGCTCTGAACTTGAATAGTTTACAAGTAT AAACACTGGAAGAATCTAAACTACAAATACCTATATTATTAAAAATATAAAAGAAAAAGGAGACAACTATTTTGAAAGGT GTCCTTGAACTTCTCATCTCCAGTTGCAGTATACACTTTTTCCTCTCTAGTGCACCATGAGACAGACATGAATGTTGGAA AATTAATGTTGAAAAATTGAAACTGATCTGGATTGGAGCATCGAGCAATTTCTCATGATGAATATGTTTTGTGAATGTGC TGATACTCTTCATTACAGGTTTTCCGAGCTAAAGAGTTTTTATGGAATTGAAGATGAAAAGCCTTCTTCAACTGGAGCCA CTGGCCCACAAACGATCAGCTCAGGATTATTGTGTATGGACTCTGGATGTAAATTTTGTGCATCGGCTTCTTTTTCTGAA ATTGCAATAGCTGTATTAACTTGATATAGAAATTAATGCAGCTATCACTCTAAAGTGTGTTGGAGCATCCATGGGTGAGA AGCCACCCTTGACAAAGAAGCTGCCAGCTACAACTACAGTAGAACTTCAGTACTTTTTTTTAGTAATATTCAGTCTGTGA ATAATTTAAAAACCTTTCTGATCACATTGTTTTTCTCAGGTTGGTAAACTGAAATTTCTGTGTGAAAGCTTTTTTAAGCT GAAGTCCATGAAGCTTAAACTATTTCTTCAAGAAGAGGTTAGTTTCTGCTAAGAATAAAATGTGCCATTTATTATCATGT TTGCCTGATTCAAATTTCATTTTACTATAGTGAAGCAACAACCTTTCTACAATCTTAAAAATCACTTTATGTGATTAATA CAAATTTTTTCATACTGGTATGCTGGAAAAACAAACTTCTTGTGGAGGAATTAGTGAGGGAGGACTATAACTAGGTAGAT TACTCATATCTATTTATTTCCCACTGAAGAAATTTTCTTAGATAGAGGAACTATGGAAGAGTATAGTGAACATTATTTCT GTACCTCTAAAAAATGGTGGTTTCTTGATTTTGTTACATGTCTTTGAATTTACAGGGCTCTCCATTACCCCTGCTGCTTG ATAATGACATGTCATCTCTTATAGACCTTGGAATTGGCAATGATTCGAATATTCTTGTAGACGAAGAAAGTTGATGAATA TATCATAATTTTTGGAGCTATGCTGAAGTCTATATACTTTTAAGATTAGCTGCATTCAATCCTAAAAGAATGGTTTTGTA ATGAATGCATTTTTTGTAAGTACACCTCTTGTGTAGGTCACAAGGATTTGTTTGGCGTCAGTTAAGTTCTTATTTGAGGT TTTGATGCATTACTTAGTTAATTGGATGGCCTACCCCCTCCTCTGCCCCAGCTTTTTATGTGAATCTCCAATTATAATTT TACGGTTGCTTAAAATAAATTTTAATTTTGATGCATTGACAGTGTAAAGTTTCTTTACACAAATATTCAATAGTTGTTTG CCACATAAGAAGTACATTTTAAAATTAACTAGTGGAATTACCCGTGCCCTGCACGGGGTGACTTTTGTTATTTAAAATGT AAATTTTGT 

CDS sequence (LotjaGi6g1v0275000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGGATTCCCCAAAGCCAAGGCAAGAATTCCGGGTCGGCCAACGAGTGCATGCATCTGGTGATTCACGGAGAATTGG CACAGTGAAGTATGTAGGGCCAGTAGAAGGCTATTCAGACATCTGGGTCGGAGTTGAATGGGACAATGGTGAAGGCAAAC ATGATGGATCCATCAATGGTGTCAGGTACTTTCATGCTAAGTCTGAAAAATCAGCATCGTTTGTTCGTGCCCAGAATCTT AACCAAGGGATTTCATTGCTCGAAGCTCTTGAAACTAGATATCGAAGTCATTCTACCAAGGATGAAGAAGATGAAATGTA TGTCCTTTCAACTAGCAACAAGCGAGTATCTGTTCAATTTTTGGGTCAAAATCAAATTCATGACAAGCTTAGTCGATTTG AGGAGTTAACCGCCATATCATTGTCATTTATGGGCATTAGTTCCCCAGGGGATCCATGTCATATTAATACGACAGTGCCA AATATAAAAGCACTTGACCTGTCTGGGAACCTGCTCTCGGAGTGGAAGGATGTTGGGACAATTTGTGAACAGTTACCTGC TCTGGGGACTCTCAACTTATCTTACAACTTAATGACACCATATAAATCTGAGCTTCCATTACTGAAAAGCATCCGTGTTC TGGTTTTAAATAATACTGGTGTAGATTGGGAGCAGGTTGAATTGCTTAGACAACCACTGATGGCAATCGAAGAGCTACAT ATTATGGGAAACAATATAAGCAGAATACTGCCTATGACATCCTCTATGGTTCAAGGATTTGATTCTTTGCGGCTGTTGAA TTTGGAAGACAATTGTATAGCTGAATGGAAAGAAATCATGAAGCTTTCTCAGCTAAGATGTTTGGAGCAGCTTTATTTGA ACAAGAATTGTTTGAGTTCTCTCTTTTATCCCGATAATTATTCGCTGTATGAATCGGAAGTTAAGTGCTGCAAGCCTTTT CAAAATTTGCGCTGTCTTCTATTGGGTGACAACAACATTAGTGATCTGGCCTCGGTTGATTCATTAAACTCATTTCCTAA CTTGGTGGATATCAGGCTATCTGGAAACCCAATAACTGATTCAACGAGAGGTGGAATTCCAAGATTTGTTTTGATTGCTC GATTAGCCAAAATTCAGATATTGAATGGGAGTGAGGTTACCCCTCGTGAAAGGAAGGACTCTGAGATTAGGTATGTTCGT CTTGTGATGTCAAGATTGCATGCCAGTCCTGGAGAAATCAAACAACATCCCAGGTTTTCCGAGCTAAAGAGTTTTTATGG AATTGAAGATGAAAAGCCTTCTTCAACTGGAGCCACTGGCCCACAAACGATCAGCTCAGGATTATTGTCTATCACTCTAA AGTGTGTTGGAGCATCCATGGGTGAGAAGCCACCCTTGACAAAGAAGCTGCCAGCTACAACTACAGTTGGTAAACTGAAA TTTCTGTGTGAAAGCTTTTTTAAGCTGAAGTCCATGAAGCTTAAACTATTTCTTCAAGAAGAGGGCTCTCCATTACCCCT GCTGCTTGATAATGACATGTCATCTCTTATAGACCTTGGAATTGGCAATGATTCGAATATTCTTGTAGACGAAGAAAGTT GA 

Protein sequence (LotjaGi6g1v0275000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQDSPKPRQEFRVGQRVHASGDSRRIGTVKYVGPVEGYSDIWVGVEWDNGEGKHDGSINGVRYFHAKSEKSASFVRAQNL NQGISLLEALETRYRSHSTKDEEDEMYVLSTSNKRVSVQFLGQNQIHDKLSRFEELTAISLSFMGISSPGDPCHINTTVP NIKALDLSGNLLSEWKDVGTICEQLPALGTLNLSYNLMTPYKSELPLLKSIRVLVLNNTGVDWEQVELLRQPLMAIEELH IMGNNISRILPMTSSMVQGFDSLRLLNLEDNCIAEWKEIMKLSQLRCLEQLYLNKNCLSSLFYPDNYSLYESEVKCCKPF QNLRCLLLGDNNISDLASVDSLNSFPNLVDIRLSGNPITDSTRGGIPRFVLIARLAKIQILNGSEVTPRERKDSEIRYVR LVMSRLHASPGEIKQHPRFSELKSFYGIEDEKPSSTGATGPQTISSGLLSITLKCVGASMGEKPPLTKKLPATTTVGKLK FLCESFFKLKSMKLKLFLQEEGSPLPLLLDNDMSSLIDLGIGNDSNILVDEES 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 9 85 77 4.0E-23
PANTHER 9 524 516 1.9E-164
PANTHER 9 524 516 1.9E-164
SUPERFAMILY 9 147 139 6.02E-33
SMART 13 81 69 6.0E-30
Pfam 13 79 67 2.5E-21
ProSitePatterns 33 64 32 -
ProSiteProfiles 33 76 44 15.533
Gene3D 86 230 145 2.6E-11
SUPERFAMILY 114 382 269 2.89E-25
ProSiteProfiles 161 182 22 6.349
ProSiteProfiles 187 208 22 5.202
Gene3D 231 309 79 3.2E-9
ProSiteProfiles 235 256 22 5.086
ProSiteProfiles 262 283 22 7.35
ProSiteProfiles 287 308 22 5.71
Gene3D 310 399 90 3.0E-15
ProSiteProfiles 322 343 22 8.459
ProSiteProfiles 347 360 14 4.501
Gene3D 440 533 94 1.0E-8
SUPERFAMILY 442 530 89 8.89E-11
CDD 448 530 83 4.58698E-21

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0275000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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