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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0275300 |
| Transcript ID | LotjaGi6g1v0275300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BRCA1-A complex subunit BRE; TAIR: AT5G42470.1 BRCA1-A complex subunit BRE-like protein; Swiss-Prot: sp|Q568D5|BRE_DANRE BRCA1-A complex subunit BRE; TrEMBL-Plants: tr|I3SXL6|I3SXL6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0275300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59205099..59209950) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGAATAAGTTCATTCAGAACCATATTTAAAATTAAAAAATGTTCATCCAAATTTGCCAATAATCCAGCACTTCAGCT TCTCTTTTTGCAGTGAAGTGTGCGTTAGAACTGTGAATCGGGAAACATGGCGGTTGGTGCAGAAAACGTGCCTCCGTTCA TCGCCGCTCAGCTCACTCACCTCCTCTCTCACTTCCCTCTCAACCTCAAGGCACTCCTTCTCTCTCTCTCCGCTCTCCGT TCTCATCTCCGATCCCCAACCACCGTAACTGAATGCAGTTTTTCCGTTCTCCTGCAGGTTGAACACGCTTGGTCCGGCGA CAAGTACAACTCCGGCGCCTTCGATCGCTTCACTCTCCTCATTCCCTATTGCCTCGACTTCATCAAGTGTATGCATCCAT CTCTCTATCCGTTCACATTCAATCACGTTTCTTCTTTCTTTCAATTGCGAATCAAACATTGATTAGGGTTTAGGGTTTTG CATCGTTTCGTTTCAGGGGATGTGATATACAACGTGGATTGCCCAATCGCTGCACCTGATGTTATCTTCGGCGCCGAAGA CGAAGATTTCCATCCCTTTCACATGCTCCCTTCCGGTGAAGGTGCTTCCCTGCCGAGTAACTGTTTGTCCGATTGGAACT ACAAAGACCCTACGCGTCTCTTGGTTCTCATTCAATTTCTGAGGTTCGTTTCGTTTTCGTTGTGTGTGTGTGGATTAGTT GGTTGGGTTGGGTGAATTGTACTAACAGTGGTTGGTTTTGTGTTTCTGGTTCAACAGAGATCAGTATGTGTTGTATCAGA GGAAACGTGTTGAAGGAGTTGATGATGAACGGTTGAAATTTGAAGTCAGCACAATTGTGTCCAGGGAGGTAGTGTTTTTT TCCCTCCTTATGCCCACTATTTTCTTGCAAATATTCAGAAATTTGAGTTTAGTTGGTGAATTTATATTTCATCGTTGTGT CTTGATTATGCATGAGTTTGGGGAGAGACTGAATTGAGTGGTGCTGCTGAAGGTTAGAATTTAGATGGTAGCAGACTTGA CAATGTTGAATTAAGAATCACTGAAGAAACCAATGGCTAATGTCTTGTTTAAATTTTATCCAAGAGATGCTGGAAAACTG ATAGAGTGATAGGTACTCGGATATCACATGGTTTAGTTAGTTAAGTGAGGTATTATCACATAGTTAGATAGTTGGTTAAA GGGTTAGTAAGGCTTGTTGTTTATAATAAGAGGGGGGTTAGAGAGCATTAGGTATCTTTTGCATCATTTGGGTATCAAGT GGGATTTGGGTTAGAGAGAGAGAGCTCTCTCTTGTATCTTGCTCTGATTCCCATATTGGAAATTAGGGTTCTATCATTGA AATAATATCAGTTCTTGGTCAGATTCTATCAAAAACACTAGTCAATTACATATGGAGGAGAACATATATGAGCTGGACTT ACTTAACTTTTTATCAATTTGAGTTCTTTCATTCTCCTACAGTGACTGCTACAACACAAAGATATATATCATTTGAAATT TATATATCTTGTTGGCTTTTTATTTTACTGGAGACTTGGTTTTTTGTAAGAATCCAGTGGTGTTAGTTAGTCATGACTCA TACCTAGCTGGCTCCACCTAGTGGAGATTCGGTGCTGTATATGCCTTGGATTGTGTGAATAGTTTTTTACTCTTTTAGGA TTTGCAGTGTGTGCCCTTCCAGTTCTCTTGATTAAAAATCACAATTACGAAATTTGGTTTATACTTTGTCTATTGGGTAA AATTGGCCTTTTACTTAATGGAACACATCACCTGACTGGAATTTCACTACTGCAGGGAATCGAAATGCATAGAAGTTCTG GTTTTGAGAAGGTATTTCTTCACTAAAATGTGCTAGTATTTATATACGATATACACATGGATGGTTGAGCAAATTAATGT ACCCATCGTGGACAATATTCTTGACTTTGGTGACTTTACATTTTAGTGTAGTCAGAGGAGGTAAAATTTGCTGTGCCCCT ACTGGACATGAACATAAACAAGATGGTGCCTGGCTGCCCCTGGAGATATCCCCAGAGAATGCACTTACAGGTTTCTTTCT TTAATCTCTTAAAAGGTTCTTTTGAAAATTTTAACTTATTTTCAAACAAACAACTTATGATATGTTGATCTTAGGTTGTA TATCCTGTTGGAAGAAAATATTTGTCTGCTCCTTCCGCTCCTCGCCTGAAGTTAGTATCTACTTCTGAGTTGAAGGCCTT ATTTTCCATTGATGATGTCAAGCTACCTCCTTGGTTGGATGGGATGTAAGCTTTTCAGTTTTTGTTTTGTCCCACGACAA TATATTTACAGGATTGAGATAGTTTTTGATGACATGTTTGCTTTTATTGTTGATCTATTTTGGAAAGGTGCTTGGCAGAA TATCTTCCGAATCTGGAAGAATATCTTGAGAAACAGGTTAGCTGAAGTTCCTTTTATTGGTTGTCTATTGGTTTACATGT ACTTTCTTGCGCTTAATGACGATCCTGGTTTTTGTTAAAATTAATATTTATTCACGTTGAACTTAGGTCCTTGAGGCTGT GTCATTAATTGATGTTAGAAGGCGCTTCATTGAAGCATTGGCTGGTCCACTTGGAAGACCGCTTGAAGCTGATCCTGTAT CTGCTCTTGACGCTTATTCTCAGTTTGCCATGATTGCTTGGTTTAATATTAATTGTCAATTTCTGATTTCTCTGTTTCTA GGTCTTTTGCAGAAAGGCAACTTTTCTTTGTACATCTGGAGCTTTCACATTTCTGGTAATATATGTCACTCATTACATAT TTCTAACACACACTTCACTGCACCTTGTATTTATTCATTCCTAGATAGTATCAGCATATGAAGTGCACATCGATTTCTTT TTTCTTTCTCTTTGTTTTTGTATAATAAAGTCTTAAATTCAATTAATCCATAACGAAAATGTCCTTATTATAGGTCTTAA ATTCAAAGTTCTACTGTTGTTTATTTAGGCACACTTCCTAATTCCAACTCAGTTTCCAAAGCAGCAGCCGACCATTATGC TTCAAAGTTCACAGGTTATCTATAGTTCCTCTTTCCAACATATTTCTGTTTTAAAGCTTAAGGTTTGAATATCACTTACT GTATAACGATGTAAGCAATAGGTAAAGAAGATGCTTTTCAATTTACTCATGTTGCCGCAAAATGTCAAATGTCTAACACT TAACTAATTCAATTAAGTAATAGATGCACAGAGGTTCATGACTTGATTGTATCATTATATTGTTTATTTTTAATAGACAC TTTTATGGACTTATGTTGTATAGTGGGGAAAATGTATATATACTCAATTAGATTTACGTTCTCAGTTGATGAACTGATAT GTTAGTTGGATAATGATCGATGTTTAGTTTTTTACTGGAGGTTCATAGTATCCATGTGGTGTAGAACTAGAATTGTTTTC TCTTTTGCTTCAGAGAAGCATTGTAATTTAAATTTAAGGTGGAAAACTGGAAATGTTCTTTTAACTGACAAGTCAAGTGA TTATTCTTATCTTCGCACAAATTATTTTGTTAGGACGTCCTTCGTAGCAGGACTCCAGTGGAAGCGAATGGATATTTGTT TATCATGATGTATAATATAAGCTATTTTCTTGCTGGGCTGTAATCCCCGTCCAGGCTACTGTGTTTGACGCTCCTGCTAA CCCCATAATATTAGGAGGGTGTAGTTGTTATAGATGAGCACAGTTTCTGTAGGCATAACCAATCAAAAGTTCAAGATAAT GTTAACATAACTTAAGCACCAGTTCTGATGATGATTATTTTAATGCCTTCTGAGTTTTTTATTAGTTTTACTCGTATAGT TGTACCTATAGGCATTGTACTCTCGCATTAATTGCTTATTAGGAGGTTCTGCATTTTGTAGAGCTGTTGTCAATGATATT ACCTCAGGTTGAAGTTATTTCCTAATGTGAGGCTCTTTTCATGTTATTTTATAGCATTTTAATTCACAAACGACACCGAT AAAGTCACGTCTTATATCTGATTACCCATGGAGTCCGAGATGGGAACCATCACTGATGGCTGAGCGTATTGGGTGAGAGT TTTGAATTATTTACTTTATTTTTGCCGTTATGCTTTACATTTCTTTCAGTGTTCCAGCATTGTTGAGCTAACAAATGAAT CGTTTCTATAGTGAGTTTCTAGCAGATGAGTCCTTGAACTTCAAGAGGCAATGCAGCGAAGGTCAACTTTAGCAGTGACA TGGCCAGAGTATGTTCAGCTTAATGTTAATGTTGTGGCAATCCCTGAAGTTGTTCGCTGAAAAATGTCATGTTGGCAATG GCATGTTCGGTCAATGCATTATTTTTTGTGATTGTATTTAAATGAATTGCAGTTTAATTATTTTTGTATTCCTGTGATTA TCCTAGTTGATAGTTCTTCTGCGTGTCAAGTGTTATGTTCTCTAGTTTTTGGTATGGCACCGTGAATGTTCTTTTATATA TAGAAGGGATATCAACATGAAAAATAGTTTTTTATTTTATTTTTTCGTTTGCACGATTTCATCAATGAAAAAAAATCATC TTCATTCTGTTACTTTTTACTTTTTGGAATCTTTTAAAAATGTGAGATTAACATTTATTTTCACTATTTTTATAATATTC ATAACATAGATGCGAAAAAGTGAATTTTTAAAGAGATATTCGTTTGGATAATTTTAATGAATGTTGTTTTTTGGTTTGTG ATGATTAAAATGAGTTTGAATTTGCATGTATATTATAATCAATACTAGTGTTTTTTACCCGCGCGTTGCACGGGGAATTT GTCTATTGTATTTGATAAATCGATCGATATTTTAAATTATAAAAAATTTAAG
CDS sequence (LotjaGi6g1v0275300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTTGGTGCAGAAAACGTGCCTCCGTTCATCGCCGCTCAGCTCACTCACCTCCTCTCTCACTTCCCTCTCAACCT CAAGGCACTCCTTCTCTCTCTCTCCGCTCTCCGTTCTCATCTCCGATCCCCAACCACCGTAACTGAATGCAGTTTTTCCG TTCTCCTGCAGGTTGAACACGCTTGGTCCGGCGACAAGTACAACTCCGGCGCCTTCGATCGCTTCACTCTCCTCATTCCC TATTGCCTCGACTTCATCAAGTGGGATGTGATATACAACGTGGATTGCCCAATCGCTGCACCTGATGTTATCTTCGGCGC CGAAGACGAAGATTTCCATCCCTTTCACATGCTCCCTTCCGGTGAAGGTGCTTCCCTGCCGAGTAACTGTTTGTCCGATT GGAACTACAAAGACCCTACGCGTCTCTTGGTTCTCATTCAATTTCTGAGAGATCAGTATGTGTTGTATCAGAGGAAACGT GTTGAAGGAGTTGATGATGAACGGTTGAAATTTGAAGTCAGCACAATTGTGTCCAGGGAGGGAATCGAAATGCATAGAAG TTCTGGTTTTGAGAAGTCAGAGGAGGTAAAATTTGCTGTGCCCCTACTGGACATGAACATAAACAAGATGGTGCCTGGCT GCCCCTGGAGATATCCCCAGAGAATGCACTTACAGGTTGTATATCCTGTTGGAAGAAAATATTTGTCTGCTCCTTCCGCT CCTCGCCTGAAGTTAGTATCTACTTCTGAGTTGAAGGCCTTATTTTCCATTGATGATGTCAAGCTACCTCCTTGGTTGGA TGGGATGTGCTTGGCAGAATATCTTCCGAATCTGGAAGAATATCTTGAGAAACAGGTCCTTGAGGCTGTGTCATTAATTG ATGTTAGAAGGCGCTTCATTGAAGCATTGGCTGGTCCACTTGGAAGACCGCTTGAAGCTGATCCTGTCTTTTGCAGAAAG GCAACTTTTCTTTGTACATCTGGAGCTTTCACATTTCTGGCACACTTCCTAATTCCAACTCAGTTTCCAAAGCAGCAGCC GACCATTATGCTTCAAAGTTCACAGCATTTTAATTCACAAACGACACCGATAAAGTCACGTCTTATATCTGATTACCCAT GGAGTCCGAGATGGGAACCATCACTGATGGCTGAGCGTATTGGTGAGTTTCTAGCAGATGAGTCCTTGAACTTCAAGAGG CAATGCAGCGAAGGTCAACTTTAG
Protein sequence (LotjaGi6g1v0275300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVGAENVPPFIAAQLTHLLSHFPLNLKALLLSLSALRSHLRSPTTVTECSFSVLLQVEHAWSGDKYNSGAFDRFTLLIP YCLDFIKWDVIYNVDCPIAAPDVIFGAEDEDFHPFHMLPSGEGASLPSNCLSDWNYKDPTRLLVLIQFLRDQYVLYQRKR VEGVDDERLKFEVSTIVSREGIEMHRSSGFEKSEEVKFAVPLLDMNINKMVPGCPWRYPQRMHLQVVYPVGRKYLSAPSA PRLKLVSTSELKALFSIDDVKLPPWLDGMCLAEYLPNLEEYLEKQVLEAVSLIDVRRRFIEALAGPLGRPLEADPVFCRK ATFLCTSGAFTFLAHFLIPTQFPKQQPTIMLQSSQHFNSQTTPIKSRLISDYPWSPRWEPSLMAERIGEFLADESLNFKR QCSEGQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 405 | 373 | 1.2E-134 | ||
| Pfam | 67 | 357 | 291 | 1.4E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | BRCA1-A complex | A protein complex that contains the BRCA1-BARD1 heterodimer, RAP80/UIMC1, BRCC3/BRCC36, BRE/BRCC45, FAM175A/CCDC98/Abraxas and MERIT40/NBA1, and specifically recognizes and binds K63-linked polyubiquitin chains present on histone H2A and H2AX at DNA damage sites. | ||
| Cellular component | BRISC complex | A protein complex that contains the FAM175B/ABRO1, BRCC3/BRCC36, BRE/BRCC45 and MERIT40/NBA1 proteins, and specifically cleaves K63-linked polyubiquitin chains. |
Expression pattern of LotjaGi6g1v0275300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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