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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0275300 |
| Transcript ID | LotjaGi6g1v0275300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BRCA1-A complex subunit BRE; TAIR: AT5G42470.1 BRCA1-A complex subunit BRE-like protein; Swiss-Prot: sp|Q568D5|BRE_DANRE BRCA1-A complex subunit BRE; TrEMBL-Plants: tr|I3SXL6|I3SXL6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0275300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59205135..59209670) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATGTTCATCCAAATTTGCCAATAATCCAGCACTTCAGCTTCTCTTTTTGCAGTGAAGTGTGCGTTAGAACTGTGA ATCGGGAAACATGGCGGTTGGTGCAGAAAACGTGCCTCCGTTCATCGCCGCTCAGCTCACTCACCTCCTCTCTCACTTCC CTCTCAACCTCAAGGCACTCCTTCTCTCTCTCTCCGCTCTCCGTTCTCATCTCCGATCCCCAACCACCGTAACTGAATGC AGTTTTTCCGTTCTCCTGCAGGTTGAACACGCTTGGTCCGGCGACAAGTACAACTCCGGCGCCTTCGATCGCTTCACTCT CCTCATTCCCTATTGCCTCGACTTCATCAAGTGTATGCATCCATCTCTCTATCCGTTCACATTCAATCACGTTTCTTCTT TCTTTCAATTGCGAATCAAACATTGATTAGGGTTTAGGGTTTTGCATCGTTTCGTTTCAGGGGATGTGATATACAACGTG GATTGCCCAATCGCTGCACCTGATGTTATCTTCGGCGCCGAAGACGAAGATTTCCATCCCTTTCACATGCTCCCTTCCGG TGAAGGTGCTTCCCTGCCGAGTAACTGTTTGTCCGATTGGAACTACAAAGACCCTACGCGTCTCTTGGTTCTCATTCAAT TTCTGAGGTTCGTTTCGTTTTCGTTGTGTGTGTGTGGATTAGTTGGTTGGGTTGGGTGAATTGTACTAACAGTGGTTGGT TTTGTGTTTCTGGTTCAACAGAGATCAGTATGTGTTGTATCAGAGGAAACGTGTTGAAGGAGTTGATGATGAACGGTTGA AATTTGAAGTCAGCACAATTGTGTCCAGGGAGGTAGTGTTTTTTTCCCTCCTTATGCCCACTATTTTCTTGCAAATATTC AGAAATTTGAGTTTAGTTGGTGAATTTATATTTCATCGTTGTGTCTTGATTATGCATGAGTTTGGGGAGAGACTGAATTG AGTGGTGCTGCTGAAGGTTAGAATTTAGATGGTAGCAGACTTGACAATGTTGAATTAAGAATCACTGAAGAAACCAATGG CTAATGTCTTGTTTAAATTTTATCCAAGAGATGCTGGAAAACTGATAGAGTGATAGGTACTCGGATATCACATGGTTTAG TTAGTTAAGTGAGGTATTATCACATAGTTAGATAGTTGGTTAAAGGGTTAGTAAGGCTTGTTGTTTATAATAAGAGGGGG GTTAGAGAGCATTAGGTATCTTTTGCATCATTTGGGTATCAAGTGGGATTTGGGTTAGAGAGAGAGAGCTCTCTCTTGTA TCTTGCTCTGATTCCCATATTGGAAATTAGGGTTCTATCATTGAAATAATATCAGTTCTTGGTCAGATTCTATCAAAAAC ACTAGTCAATTACATATGGAGGAGAACATATATGAGCTGGACTTACTTAACTTTTTATCAATTTGAGTTCTTTCATTCTC CTACAGTGACTGCTACAACACAAAGATATATATCATTTGAAATTTATATATCTTGTTGGCTTTTTATTTTACTGGAGACT TGGTTTTTTGTAAGAATCCAGTGGTGTTAGTTAGTCATGACTCATACCTAGCTGGCTCCACCTAGTGGAGATTCGGTGCT GTATATGCCTTGGATTGTGTGAATAGTTTTTTACTCTTTTAGGATTTGCAGTGTGTGCCCTTCCAGTTCTCTTGATTAAA AATCACAATTACGAAATTTGGTTTATACTTTGTCTATTGGGTAAAATTGGCCTTTTACTTAATGGAACACATCACCTGAC TGGAATTTCACTACTGCAGGGAATCGAAATGCATAGAAGTTCTGGTTTTGAGAAGGTATTTCTTCACTAAAATGTGCTAG TATTTATATACGATATACACATGGATGGTTGAGCAAATTAATGTACCCATCGTGGACAATATTCTTGACTTTGGTGACTT TACATTTTAGTGTAGTCAGAGGAGGTAAAATTTGCTGTGCCCCTACTGGACATGAACATAAACAAGATGGTGCCTGGCTG CCCCTGGAGATATCCCCAGAGAATGCACTTACAGGTTTCTTTCTTTAATCTCTTAAAAGGTTCTTTTGAAAATTTTAACT TATTTTCAAACAAACAACTTATGATATGTTGATCTTAGGTTGTATATCCTGTTGGAAGAAAATATTTGTCTGCTCCTTCC GCTCCTCGCCTGAAGTTAGTATCTACTTCTGAGTTGAAGGCCTTATTTTCCATTGATGATGTCAAGCTACCTCCTTGGTT GGATGGGATGTAAGCTTTTCAGTTTTTGTTTTGTCCCACGACAATATATTTACAGGATTGAGATAGTTTTTGATGACATG TTTGCTTTTATTGTTGATCTATTTTGGAAAGGTGCTTGGCAGAATATCTTCCGAATCTGGAAGAATATCTTGAGAAACAG GTTAGCTGAAGTTCCTTTTATTGGTTGTCTATTGGTTTACATGTACTTTCTTGCGCTTAATGACGATCCTGGTTTTTGTT AAAATTAATATTTATTCACGTTGAACTTAGGTCCTTGAGGCTGTGTCATTAATTGATGTTAGAAGGCGCTTCATTGAAGC ATTGGCTGGTCCACTTGGAAGACCGCTTGAAGCTGATCCTGTATCTGCTCTTGACGCTTATTCTCAGTTTGCCATGATTG CTTGGTTTAATATTAATTGTCAATTTCTGATTTCTCTGTTTCTAGGTCTTTTGCAGAAAGGCAACTTTTCTTTGTACATC TGGAGCTTTCACATTTCTGGTAATATATGTCACTCATTACATATTTCTAACACACACTTCACTGCACCTTGTATTTATTC ATTCCTAGATAGTATCAGCATATGAAGTGCACATCGATTTCTTTTTTCTTTCTCTTTGTTTTTGTATAATAAAGTCTTAA ATTCAATTAATCCATAACGAAAATGTCCTTATTATAGGTCTTAAATTCAAAGTTCTACTGTTGTTTATTTAGGCACACTT CCTAATTCCAACTCAGTTTCCAAAGCAGCAGCCGACCATTATGCTTCAAAGTTCACAGGTTATCTATAGTTCCTCTTTCC AACATATTTCTGTTTTAAAGCTTAAGGTTTGAATATCACTTACTGTATAACGATGTAAGCAATAGGTAAAGAAGATGCTT TTCAATTTACTCATGTTGCCGCAAAATGTCAAATGTCTAACACTTAACTAATTCAATTAAGTAATAGATGCACAGAGGTT CATGACTTGATTGTATCATTATATTGTTTATTTTTAATAGACACTTTTATGGACTTATGTTGTATAGTGGGGAAAATGTA TATATACTCAATTAGATTTACGTTCTCAGTTGATGAACTGATATGTTAGTTGGATAATGATCGATGTTTAGTTTTTTACT GGAGGTTCATAGTATCCATGTGGTGTAGAACTAGAATTGTTTTCTCTTTTGCTTCAGAGAAGCATTGTAATTTAAATTTA AGGTGGAAAACTGGAAATGTTCTTTTAACTGACAAGTCAAGTGATTATTCTTATCTTCGCACAAATTATTTTGTTAGGAC GTCCTTCGTAGCAGGACTCCAGTGGAAGCGAATGGATATTTGTTTATCATGATGTATAATATAAGCTATTTTCTTGCTGG GCTGTAATCCCCGTCCAGGCTACTGTGTTTGACGCTCCTGCTAACCCCATAATATTAGGAGGGTGTAGTTGTTATAGATG AGCACAGTTTCTGTAGGCATAACCAATCAAAAGTTCAAGATAATGTTAACATAACTTAAGCACCAGTTCTGATGATGATT ATTTTAATGCCTTCTGAGTTTTTTATTAGTTTTACTCGTATAGTTGTACCTATAGGCATTGTACTCTCGCATTAATTGCT TATTAGGAGGTTCTGCATTTTGTAGAGCTGTTGTCAATGATATTACCTCAGGTTGAAGTTATTTCCTAATGTGAGGCTCT TTTCATGTTATTTTATAGCATTTTAATTCACAAACGACACCGATAAAGTCACGTCTTATATCTGATTACCCATGGAGTCC GAGATGGGAACCATCACTGATGGCTGAGCGTATTGGGTGAGAGTTTTGAATTATTTACTTTATTTTTGCCGTTATGCTTT ACATTTCTTTCAGTGTTCCAGCATTGTTGAGCTAACAAATGAATCGTTTCTATAGTGAGTTTCTAGCAGATGAGTCCTTG AACTTCAAGAGGCAATGCAGCGAAGGTCAACTTTAGCAGTGACATGGCCAGAGTATGTTCAGCTTAATGTTAATGTTGTG GCAATCCCTGAAGTTGTTCGCTGAAAAATGTCATGTTGGCAATGGCATGTTCGGTCAATGCATTATTTTTTGTGATTGTA TTTAAATGAATTGCAGTTTAATTATTTTTGTATTCCTGTGATTATCCTAGTTGATAGTTCTTCTGCGTGTCAAGTGTTAT GTTCTCTAGTTTTTGGTATGGCACCGTGAATGTTCTTTTATATATAGAAGGGATATCAACATGAAAAATAGTTTTTTATT TTATTTTTTCGTTTGCACGATTTCATCAATGAAAAAAAATCATCTTCATTCTGTTA
CDS sequence (LotjaGi6g1v0275300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTTGGTGCAGAAAACGTGCCTCCGTTCATCGCCGCTCAGCTCACTCACCTCCTCTCTCACTTCCCTCTCAACCT CAAGGTTGAACACGCTTGGTCCGGCGACAAGTACAACTCCGGCGCCTTCGATCGCTTCACTCTCCTCATTCCCTATTGCC TCGACTTCATCAAGTGGGATGTGATATACAACGTGGATTGCCCAATCGCTGCACCTGATGTTATCTTCGGCGCCGAAGAC GAAGATTTCCATCCCTTTCACATGCTCCCTTCCGGTGAAGGTGCTTCCCTGCCGAGTAACTGTTTGTCCGATTGGAACTA CAAAGACCCTACGCGTCTCTTGGTTCTCATTCAATTTCTGAGAGATCAGTATGTGTTGTATCAGAGGAAACGTGTTGAAG GAGTTGATGATGAACGGTTGAAATTTGAAGTCAGCACAATTGTGTCCAGGGAGGGAATCGAAATGCATAGAAGTTCTGGT TTTGAGAAGTCAGAGGAGGTAAAATTTGCTGTGCCCCTACTGGACATGAACATAAACAAGATGGTGCCTGGCTGCCCCTG GAGATATCCCCAGAGAATGCACTTACAGGTTGTATATCCTGTTGGAAGAAAATATTTGTCTGCTCCTTCCGCTCCTCGCC TGAAGTTAGTATCTACTTCTGAGTTGAAGGCCTTATTTTCCATTGATGATGTCAAGCTACCTCCTTGGTTGGATGGGATG TGCTTGGCAGAATATCTTCCGAATCTGGAAGAATATCTTGAGAAACAGGTCCTTGAGGCTGTGTCATTAATTGATGTTAG AAGGCGCTTCATTGAAGCATTGGCTGGTCCACTTGGAAGACCGCTTGAAGCTGATCCTGTCTTTTGCAGAAAGGCAACTT TTCTTTGTACATCTGGAGCTTTCACATTTCTGGCACACTTCCTAATTCCAACTCAGTTTCCAAAGCAGCAGCCGACCATT ATGCTTCAAAGTTCACAGCATTTTAATTCACAAACGACACCGATAAAGTCACGTCTTATATCTGATTACCCATGGAGTCC GAGATGGGAACCATCACTGATGGCTGAGCGTATTGGTGAGTTTCTAGCAGATGAGTCCTTGAACTTCAAGAGGCAATGCA GCGAAGGTCAACTTTAG
Protein sequence (LotjaGi6g1v0275300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVGAENVPPFIAAQLTHLLSHFPLNLKVEHAWSGDKYNSGAFDRFTLLIPYCLDFIKWDVIYNVDCPIAAPDVIFGAED EDFHPFHMLPSGEGASLPSNCLSDWNYKDPTRLLVLIQFLRDQYVLYQRKRVEGVDDERLKFEVSTIVSREGIEMHRSSG FEKSEEVKFAVPLLDMNINKMVPGCPWRYPQRMHLQVVYPVGRKYLSAPSAPRLKLVSTSELKALFSIDDVKLPPWLDGM CLAEYLPNLEEYLEKQVLEAVSLIDVRRRFIEALAGPLGRPLEADPVFCRKATFLCTSGAFTFLAHFLIPTQFPKQQPTI MLQSSQHFNSQTTPIKSRLISDYPWSPRWEPSLMAERIGEFLADESLNFKRQCSEGQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 376 | 371 | 3.4E-139 | ||
| Pfam | 37 | 328 | 292 | 7.2E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | BRCA1-A complex | A protein complex that contains the BRCA1-BARD1 heterodimer, RAP80/UIMC1, BRCC3/BRCC36, BRE/BRCC45, FAM175A/CCDC98/Abraxas and MERIT40/NBA1, and specifically recognizes and binds K63-linked polyubiquitin chains present on histone H2A and H2AX at DNA damage sites. | ||
| Cellular component | BRISC complex | A protein complex that contains the FAM175B/ABRO1, BRCC3/BRCC36, BRE/BRCC45 and MERIT40/NBA1 proteins, and specifically cleaves K63-linked polyubiquitin chains. |
Expression pattern of LotjaGi6g1v0275300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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