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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0275800 |
| Transcript ID | LotjaGi6g1v0275800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase LIN-like protein, putative; TAIR: AT3G06880.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|C6L7U1|LIN1_LOTJA Putative E3 ubiquitin-protein ligase LIN-1; TrEMBL-Plants: tr|K7LBD3|K7LBD3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0275800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59267194..59272368) extracted from Lotus japonicus Gifu genome v1.2.
GTGGATTTCCATTACATTAACTTAAAAGTCCTTTTTATCTAAGTTTATGATTATATTCCATTACTCCTATGTGTAATCTA GATACAGTTTGGTCCAAAAGCTCCCTGGCATATACAGAACAGAACTTTAAACTTTAAAATATAGCTCAAAAGATTCACCA CTCACCAAATCCAACCCCTTCCTTGTCTTCATTGCTGTGCCACTGTATTTACCTTTAGTAATCTAGCTGTTTGTTTTATC TTTCTATTTGTTTTCAGTTCCAGGAATGCCATTGAACTTCTTCTTGCTTCAAACTTCTCTTTCAACCACCAACACATGGC TTCCCTTGGAGAACTAACCTCAGCAGAAAGAAGAGGCTTAATCCACCACTCAGAGAGGCCACAACACAAACTTCCACAAC AACATGAGAAAAAACCACTCCCTTCATACATCTGTCATGATCCAAAAAGCCTTGCTTCCTCAAGAAGAGGGTCTTCTTCA TCTGAATTCAAAAGAGCTGGTACAGCTTCAGAAAGATCAAATACCAAGTCATTGGTGTCTTCTTCAGATGCTAGAATGGA TGAAGGTGCCATTAGAGCAGTGATTGCTATCCTCAGTGGCTACATAGGAAGATATGTGAAAGATGAACATTTCAGGAAAA CAATCAGAGAGAAGTGCTTTTCTTTCTTGGACAAAAGAAGAAGAAAGGATTCAGGTAATGAGATTTTGTTGAACATGGAA TTGGGCATGGAGAAAGTTAATAAATTAGTAGAAGATCATGGAACAAAGAAACAACAAGTGACAATGATGAAGAGCTTAAG GAACTCCGTTGAGCTTTTAACTAAGGTTGCTTCAACCTGTGGTGTACATGATTCTCATGTCTCTGCTTGTTCTCACCTAT ACTTGGCAATTGCTTACAAGCTGCAGAGAAATGACAAGGTTTCCTCTAAGCATTTACTGCAAGTGTTTTGTGATTCTCCA AGTTTTGCAAGAACCTACCTGCTTCATGATTTGTGGGAGCATTTGTTTCTTCCCCATCTTCTCCATCTAAAGATTTGGTA CAGCAAGGAGCTTGAGTTCCTCTCAGATGAAGGTGAGAAGGAAAAGAAAATGAAGGTGTTGAGCAAAGTTTACAATGAGA AAATGGATAATGGAACTTCTCAATTTGCTTTGTACTACAAGCAATGGCTTAAAAATGGGACTAGTGAGGCTCCTCTTCCT GTTGTCTCCTTGCCATCAAGGCTAAGTTACAGATTATCAAGAAGAAGGTCTTCAGATTCCTTCATTTCAAACACCTCAAT CAATCAAAATTTGTAAGTCATATCCACATCTTTATATAAGAAACTAATATATCCGTGTGGTAGTTATGTGATCTTGTGCT TTGGTTCTCTGCAACAGATACAAGACAGTGTTTGGCCTCAATCTAAGTCGGCAACCTACCGGTCTCAGTGACCGAAATGG CGTGTTGACAACTAGCACAGGCTTTGAGATTGATGAAAAATTGCATGGAGATGAACACAAATGCAGTTTGGTTCAGGTTA GTTTCAGTGCCATCAGTTCATAGATGAAAATCATCTAATTATAATTAAAAATTGAATTTCAGAAATTTATAGCATCTTTG GCTCAACTTCTCTTTCCTCTGAAACAATTCTTGCACCAAAAGCTACTCACAGAAGCCTATGCACAAAATTTTGACTTCAG AATCAACTACAGAAGGTTTCCAAATTAATCTCCTCTCTCACTCTTGTCAGGAAGAAGACAGGACCAGGATATCTTTTGGA AGATCACCAAAACAAATTGATAAGAATCAAGCTCAATTATGGCCAGTGTCACAGAGATCGGACTATTTTCAGTACTTTTC TTGCAGGTTCATACCAACTGAAAGATTGGCAAACAACAGCTATAGATCCAAGAATTCCTCAAATGTTCTTGCAAATGACT TTATTGGAGCTATCACAACTATATCTTCATCAGATATTCTAAGCGAATGTGAATTCGCGGTTCGTGTGGTCGCCAAAGCT TGGTTGAACTCTCCTGGTGATCCTCTCATTGTAGAAGCACTAACCCAACCCAATGTAGTTGAAGCTATCCTAGAGGTGTT GTTTGCCTCAACTGAAGATGAAATTCTGGAATTGATTATATCAATTCTAGCAGAATTGATACAAAGGAATGTTGCTATTA GACAAATTATACTGAATTCTGATCCACAATTAGAAATATTTGTGAGACTTCTTAGAAGCACTAGTCTTTTTCTAAAAGCT GCAGTTCTGCTTTATCTGTCAAAGCCACAGGCAAAACAGATGCTATCATCAGAATTTGTGCCACTAGCACTTAGAGTGTT GGAATTTGGAGACAAATTGCAGACCCTCTTCACAGTACAATGCAGTCCTCAAGTAGCAGCATTTTACATATTGGACCAAC TTCTTACTGGTTTTGATGAAGATAAGAACTTGGAGAATGCAAGGCAAGTTCTTTCACTTGGGGGGTTGACCCTTCTCATG AGAAGAATTGAAGAAGGAGAGGTCCATGAGAGAAACAATGTTGCGTTGATGATTTCATGTTGCATTAAAGCTGAAGGAAG CTGTAGGGTTTTTTTAGCTGAAAATATAAATACAACTTCATTGCTTGAACTCATTGTTCTTGGGAGCAAACAAAGTTCCA ATGGTTATGCCTTGTATGTGCTAGCTGAGTTGCTCTACTTGGATAGGTATGTTACGCGGAGCATGTTTGGATGCGGACCA AAGCACTTATTGGAGCTTATCTAGTGTTATTTTCTAGTAGATAATCTCCAATAAATGCTCTTTAGTACGTATCCAAATGG GCTCTCCAGAGATGTTTTCTTGTTTTTCTTTTGGTTTGGTTTTTTCTTGTTTTTCTTCAATCTGGAAATGCTAAGAATCT TTTGGAATCATGCCAGAAGAAGCAAGATATTAAATTTCTTAAGAAGACTCAAAGATGGATGGGGTGGCCTAAACACAATG CATATTTTCTTCATTTACCTTCAGAAGGCTCCACCAGAAGAAAAGCCTTTAGTTGCAGTGATATTGTTGATGCTTGATCT TATGGTAATTCATTCAACTTATTAGATCTATTGGTTATGCACAGTTATCTAACTTATGTGAATTTCATAATTTCTAGGTT TAATTGCATTTCATTTTTCCTAGCAAATTTAGTCCCTAATTTTTTGTAATTGTAATCTCAAATTATCAAATTGATTTTAA TATCTTGAATAGTTGACAAATGCAATAGCAGTTGTGTTGCAGGAAGATCATTTCAAGGGAAGCTTATATAGAGCAGAAGC TATTGAAACAGTAGTATCTGCTTTAAATTGTCAACTATGTAATGATAGAGTTCAACAGCAATCAGCCAGAGCTCTACTCT TGTTAGGAGGCCACTTTTCATATACAGGGGAGTCATTAATGGAAAAAGTGCTTTTGCAAAAAGTAGGTTTCCAAGAAACT TGCTTAGAAGATTCATTTCCTCCTGGCAAGGAAATGGTTGTTTATGATTCAATTCACAGGGTAAGCTTTGGTTAAAATAA TAATTATGCGATTCATGCATGTTTAGAACATTTTCTTTTTTCCCGGAATGAATTCTGGCACTCAGAAGTTGCTACACTAC TTAGAGAAGTTATTCTCCATAATTAAATTTGTCTTCAGAAATCAATTGTATAAGGATCTCTAAACAGGCATATAATTTTT AGTAGGCTTGTCTTTTACTTCACGCATGCGAACATGCTTCTAGCACTTATGGTTTCACTATTTAGCACTTCAAAATTACT GATCAAATGTATGTCTTTGACTAGAATAAGGAGGAAGAAGAAGCTGAACTTTGGCAAAAAAGAGCAGCATGTGTCTTGTT TGAAAGTGGAAGCAAGAAATTGCTATCAGCACTTGCAGATTCTTCAGCCAATGGCATCGCATGTTTGGCGCATGCGAGCC TTATAACTATTTCATGGATGAGCAGCTACCTCAACTTAGTTGAAGATAGAAATTTGCCACCAATGGCTTTCTCAATCTTA GCACCCCAGCTGCTACAATCCTTGAATTATGATAATGATGTTGAGAAAAGAGTGCTAGCTTCATATTCATTGCTATGCCT TATTAAAAATTCAGGTATGCCAAACTTTACCTTTTAATTGCAATTTTATATCATGTTTTAACTTTTCTTTCATTTACATT TGTACTTAGTTTTGACATATTGCTTGCAGGATGTGTTTCTGTCCTACCATCATTGAATAAAGATTCACTCAGACATCTCA GAAATCTCTCCCTAGTGACATGGACTGCCAATGAACTCATTTCAATTGTCTCAAAAAGCAGCTTGGAATTAAGTCAATGA TGAGCAAGTTTCATGTTAGTTGAATCTTAGTGTGTATTTGAATACCAGTTAAGTGCAACAGATTTATCCAATTCTATAAG AGTTTCATTCACTTTTTGTCTCAAAGTGAGTGCTAACTACTAATACCCGTTTGCATTGGTTCAGACGGGTAACCAAACAT AGCCTCATCTGTTTTCTGTCTTTCATGCAAGTGTGATTGTAAGCTAGCATCCTTGAGTTTTGTATAGTTAATTTGATTGA AAGGGAATATTTCTACCAAAAGAAACCTATGATAGTTTATGATTTCATTGTCTTAAAAGCTTGCTTAGCCAAAGAAAGAA ACTACAGAAAAGGAGGGGTTATAAAAGCGACCAGTGGCAGAACATGTCCAACTTAAGTTTCATCTAGATCTCAGCACCAT CTTTGTCCTGAGTTTCAAAAGTTGTAGTAACCTCACTCTCTCTCTCTCTCTCTGGCTAGACTCCTTCACATGGGTAACAG AAAAGATATAGACAAAAAGAGAGGTTTCAATATTCTATTTTATTTGTTTACACATGGATAACAACTTCTCTCTTGCTTGG TTCTTAATGTGCAACTATTTGCTGGACATAGTGACAGGGTGAGCATTCAGCTCTCCACAGAAACAGATTCTCTTGGATAA AAATATCATTTCCTTCCAAGAATAGCTGACAGATTGTACTGAACAATTTGGAGCATGAATACATGATTGATATCATCTTT GTGAGTATCTTCTCAACTCACAAAAGCTTCTTCCCATAATTGATTATGAAATTTACAATCAACGTTAAAAAGATTTCCAA ACATGCAACGATTAGACTAAAATCATGGTTTGCTACTATCCATCATGATTTTTGT
CDS sequence (LotjaGi6g1v0275800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCCTTGGAGAACTAACCTCAGCAGAAAGAAGAGGCTTAATCCACCACTCAGAGAGGCCACAACACAAACTTCC ACAACAACATGAGAAAAAACCACTCCCTTCATACATCTGTCATGATCCAAAAAGCCTTGCTTCCTCAAGAAGAGGGTCTT CTTCATCTGAATTCAAAAGAGCTGGTACAGCTTCAGAAAGATCAAATACCAAGTCATTGGTGTCTTCTTCAGATGCTAGA ATGGATGAAGGTGCCATTAGAGCAGTGATTGCTATCCTCAGTGGCTACATAGGAAGATATGTGAAAGATGAACATTTCAG GAAAACAATCAGAGAGAAGTGCTTTTCTTTCTTGGACAAAAGAAGAAGAAAGGATTCAGGTAATGAGATTTTGTTGAACA TGGAATTGGGCATGGAGAAAGTTAATAAATTAGTAGAAGATCATGGAACAAAGAAACAACAAGTGACAATGATGAAGAGC TTAAGGAACTCCGTTGAGCTTTTAACTAAGGTTGCTTCAACCTGTGGTGTACATGATTCTCATGTCTCTGCTTGTTCTCA CCTATACTTGGCAATTGCTTACAAGCTGCAGAGAAATGACAAGGTTTCCTCTAAGCATTTACTGCAAGTGTTTTGTGATT CTCCAAGTTTTGCAAGAACCTACCTGCTTCATGATTTGTGGGAGCATTTGTTTCTTCCCCATCTTCTCCATCTAAAGATT TGGTACAGCAAGGAGCTTGAGTTCCTCTCAGATGAAGGTGAGAAGGAAAAGAAAATGAAGGTGTTGAGCAAAGTTTACAA TGAGAAAATGGATAATGGAACTTCTCAATTTGCTTTGTACTACAAGCAATGGCTTAAAAATGGGACTAGTGAGGCTCCTC TTCCTGTTGTCTCCTTGCCATCAAGGCTAAGTTACAGATTATCAAGAAGAAGGTCTTCAGATTCCTTCATTTCAAACACC TCAATCAATCAAAATTTATACAAGACAGTGTTTGGCCTCAATCTAAGTCGGCAACCTACCGGTCTCAGTGACCGAAATGG CGTGTTGACAACTAGCACAGGCTTTGAGATTGATGAAAAATTGCATGGAGATGAACACAAATGCAGTTTGGTTCAGGAAG AAGACAGGACCAGGATATCTTTTGGAAGATCACCAAAACAAATTGATAAGAATCAAGCTCAATTATGGCCAGTGTCACAG AGATCGGACTATTTTCAGTACTTTTCTTGCAGGTTCATACCAACTGAAAGATTGGCAAACAACAGCTATAGATCCAAGAA TTCCTCAAATGTTCTTGCAAATGACTTTATTGGAGCTATCACAACTATATCTTCATCAGATATTCTAAGCGAATGTGAAT TCGCGGTTCGTGTGGTCGCCAAAGCTTGGTTGAACTCTCCTGGTGATCCTCTCATTGTAGAAGCACTAACCCAACCCAAT GTAGTTGAAGCTATCCTAGAGGTGTTGTTTGCCTCAACTGAAGATGAAATTCTGGAATTGATTATATCAATTCTAGCAGA ATTGATACAAAGGAATGTTGCTATTAGACAAATTATACTGAATTCTGATCCACAATTAGAAATATTTGTGAGACTTCTTA GAAGCACTAGTCTTTTTCTAAAAGCTGCAGTTCTGCTTTATCTGTCAAAGCCACAGGCAAAACAGATGCTATCATCAGAA TTTGTGCCACTAGCACTTAGAGTGTTGGAATTTGGAGACAAATTGCAGACCCTCTTCACAGTACAATGCAGTCCTCAAGT AGCAGCATTTTACATATTGGACCAACTTCTTACTGGTTTTGATGAAGATAAGAACTTGGAGAATGCAAGGCAAGTTCTTT CACTTGGGGGGTTGACCCTTCTCATGAGAAGAATTGAAGAAGGAGAGGTCCATGAGAGAAACAATGTTGCGTTGATGATT TCATGTTGCATTAAAGCTGAAGGAAGCTGTAGGGTTTTTTTAGCTGAAAATATAAATACAACTTCATTGCTTGAACTCAT TGTTCTTGGGAGCAAACAAAGTTCCAATGGTTATGCCTTGTATGTGCTAGCTGAGTTGCTCTACTTGGATAGAAGAAGCA AGATATTAAATTTCTTAAGAAGACTCAAAGATGGATGGGGTGGCCTAAACACAATGCATATTTTCTTCATTTACCTTCAG AAGGCTCCACCAGAAGAAAAGCCTTTAGTTGCAGTGATATTGTTGATGCTTGATCTTATGGAAGATCATTTCAAGGGAAG CTTATATAGAGCAGAAGCTATTGAAACAGTAGTATCTGCTTTAAATTGTCAACTATGTAATGATAGAGTTCAACAGCAAT CAGCCAGAGCTCTACTCTTGTTAGGAGGCCACTTTTCATATACAGGGGAGTCATTAATGGAAAAAGTGCTTTTGCAAAAA GTAGGTTTCCAAGAAACTTGCTTAGAAGATTCATTTCCTCCTGGCAAGGAAATGGTTGTTTATGATTCAATTCACAGGAA TAAGGAGGAAGAAGAAGCTGAACTTTGGCAAAAAAGAGCAGCATGTGTCTTGTTTGAAAGTGGAAGCAAGAAATTGCTAT CAGCACTTGCAGATTCTTCAGCCAATGGCATCGCATGTTTGGCGCATGCGAGCCTTATAACTATTTCATGGATGAGCAGC TACCTCAACTTAGTTGAAGATAGAAATTTGCCACCAATGGCTTTCTCAATCTTAGCACCCCAGCTGCTACAATCCTTGAA TTATGATAATGATGTTGAGAAAAGAGTGCTAGCTTCATATTCATTGCTATGCCTTATTAAAAATTCAGGATGTGTTTCTG TCCTACCATCATTGAATAAAGATTCACTCAGACATCTCAGAAATCTCTCCCTAGTGACATGGACTGCCAATGAACTCATT TCAATTGTCTCAAAAAGCAGCTTGGAATTAAGTCAATGA
Protein sequence (LotjaGi6g1v0275800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLGELTSAERRGLIHHSERPQHKLPQQHEKKPLPSYICHDPKSLASSRRGSSSSEFKRAGTASERSNTKSLVSSSDAR MDEGAIRAVIAILSGYIGRYVKDEHFRKTIREKCFSFLDKRRRKDSGNEILLNMELGMEKVNKLVEDHGTKKQQVTMMKS LRNSVELLTKVASTCGVHDSHVSACSHLYLAIAYKLQRNDKVSSKHLLQVFCDSPSFARTYLLHDLWEHLFLPHLLHLKI WYSKELEFLSDEGEKEKKMKVLSKVYNEKMDNGTSQFALYYKQWLKNGTSEAPLPVVSLPSRLSYRLSRRRSSDSFISNT SINQNLYKTVFGLNLSRQPTGLSDRNGVLTTSTGFEIDEKLHGDEHKCSLVQEEDRTRISFGRSPKQIDKNQAQLWPVSQ RSDYFQYFSCRFIPTERLANNSYRSKNSSNVLANDFIGAITTISSSDILSECEFAVRVVAKAWLNSPGDPLIVEALTQPN VVEAILEVLFASTEDEILELIISILAELIQRNVAIRQIILNSDPQLEIFVRLLRSTSLFLKAAVLLYLSKPQAKQMLSSE FVPLALRVLEFGDKLQTLFTVQCSPQVAAFYILDQLLTGFDEDKNLENARQVLSLGGLTLLMRRIEEGEVHERNNVALMI SCCIKAEGSCRVFLAENINTTSLLELIVLGSKQSSNGYALYVLAELLYLDRRSKILNFLRRLKDGWGGLNTMHIFFIYLQ KAPPEEKPLVAVILLMLDLMEDHFKGSLYRAEAIETVVSALNCQLCNDRVQQQSARALLLLGGHFSYTGESLMEKVLLQK VGFQETCLEDSFPPGKEMVVYDSIHRNKEEEEAELWQKRAACVLFESGSKKLLSALADSSANGIACLAHASLITISWMSS YLNLVEDRNLPPMAFSILAPQLLQSLNYDNDVEKRVLASYSLLCLIKNSGCVSVLPSLNKDSLRHLRNLSLVTWTANELI SIVSKSSLELSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 962 | 962 | 0.0 | – | |
| PANTHER | 1 | 962 | 962 | 0.0 | – | |
| Phobius | 1 | 527 | 527 | - | – | |
| MobiDBLite | 1 | 78 | 78 | - | – | |
| MobiDBLite | 11 | 38 | 28 | - | – | |
| MobiDBLite | 47 | 77 | 31 | - | – | |
| Gene3D | 303 | 676 | 374 | 1.1E-6 | ||
| SUPERFAMILY | 427 | 686 | 260 | 3.39E-8 | ||
| Phobius | 528 | 548 | 21 | - | – | |
| Phobius | 549 | 972 | 424 | - | – | |
| Coils | 970 | 972 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0275800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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