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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0275900 |
| Transcript ID | LotjaGi6g1v0275900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Argonaute family protein; TAIR: AT1G31280.1 Argonaute family protein; Swiss-Prot: sp|Q9SHF3|AGO2_ARATH Protein argonaute 2; TrEMBL-Plants: tr|G7IFV9|G7IFV9_MEDTR Eukaryotic translation initiation factor 2c, putative; Found in the gene: LotjaGi6g1v0275900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59274681..59279024) extracted from Lotus japonicus Gifu genome v1.2.
GAAACCGGTGATGGCGGAAAACGAACTCAGCCACCGCCGGAGGAGGTTACTCTGCAACCTGAATGGCGGCGCCGGAGCGG AAAACCGGAGAACATCGTTCTCCAACCCGAATGGAGACGGCCGAGGCCAAGTCCTGAACCGCGGCAACAAGAGCAACAAC CAGAACCAGAATGGAGGCGCTCAACTCCAACCCCAACCACCACTGTTTGGGAACCTGAATGGAGGCGATCAAGAAGGTCG AGTTCCAACCAGAAACCGTTAGGGTCAAGTTCCGGTGGCGGCGTTGAAAGAGTCAGAGACCTCAACGACTCGTGGCGTCG TGCTCCTGCTTCTGCTTCTGCTCCAGGTATGTTCAGACAGTTCAGTATTCAAACACATGCATTTTTGTTTTACTTGGCAT ATATGAACACTAGGATTCTAGAATAGAATAAGACAATGTTGAAAGTGTGGAAGATTTTCAATTATTGAATACAATGTAAC ATGTTTGTTTAATTATAGAATGAAACAAAATAGAACTATGTCTTGTTTGATTGTTAGATTTTCCTTGCAGATTATGTAGT TCCCAAACTGGAAAGACTACAAATATCGAAAGAATTACCCGTGTCGTCTTGTTCCCTTGAAAGAAAGGATAAGGCTACAC CTATTAAAAGACCTGATAGTGGCGGGACGTTAGCGGTTTTAACGACCAGGCTTCGGGTGAATCATTTCCCTGTTAAGTTC GATCCGGAGGGTGTAATATTGCATTATAATGTTGCGGTCCGACCGAAGTTTTCGTCGAAGGTTGGTAAGCCTCAGAAGTT GTCCAAGTCTGATCTGTCGATGGTTAGAGAGAAATTGTTCTCTGATGATCCCGAGAGGCTGCCATTGGATATGACTGCTT ATGACGGTGCGAACACGATATTTAGTGCGGTACATTTACCGGAAGAGACGTTTACCGTGGAGATCACTGAAGGAGAGGAT GAGAAGACTGTTTCGTATAGTGTTAGCATATCACTTGTTAACAAGCTCAGGCTTCGCAAGTTAATGGACTATCTTTGTGC GCACACCATCTCAATTCCTAGGGATATTTTACATGGGATGGATGTTGTGGTGAGAGAAAATCCAGCAAGGCGCACAATTT CTGTGGGACGACATTTCTATCCTTCAAATCCTCCTTTGGTAATGAAGGATCTTCACCATGGAAATATTGCTGTAGGGGGG TTTCAGCATAGTTTAAAGCCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCTGTTTTGGCTTTCCGAAAACAGAT GTCAGTCTTGGATTTCTTGCACGAGTGCATTGATAATTTTAAATTGGTTGAATTTTATCACTTCAGGAAATATGTTGAGG AGGCACTTATTGGATTAAAAGTTAATGTGACCCACCGCAAATCCAAACAGAAATATGTTATAGCAGGATTAACTCCTAAA GTTACAAGGTATGTCACTTTCCCCATTGACGATACCAAGGGCTGGAATCTCTCTAAGGATGTTAGTCTTCTTAGCTTTTT TAAAGACAAATATGGCAAGGACATTGTATACAAAGATATTCCTTGCTTGGATTTAGGGAAAGGCAATAAAAAGAACTATG TACCCATGGAATTTTGTGTTTTAGTTGATGGTCAAAGATGTACCAGAGAGCATTTGGGTGGTGTTGCTGCAAACACATTG AAAGCAATGTCATTGGCTCACCCAAATGAGAGGGAGAGTGCAATACAAAAGATGGTGCAGTCAAGTGATGGACCTTGCGG GTAAGGGTCATATTTAATTGTATTATTTGTAGATGTGTATGCCTCTTTCGAACTTGTATTATTACTTTCATCTCATGGGT TCTTAGTTACGGTTGCATACTTGCATGAAATGACAATCGTGACTTTTTATTTAAAGGTCAAAATTGCATGTTTCATTCAC CCTTCATTTTTTGCCCATGTGTGGATTAGGGCATACGATTTAGAAAGGTGAAAACGATTCCCTGAACTTAATACCAGGTG AACTGTGCAAGTCACTGGAACAAGTCTGGTCCACATACTCTGGCAGTGGAAGTTGGTGGATTCTTTGGATCATCTAAATG AGAGATTAATCAGAAGAAATTTAATAATAGGAAAGAAAAACTTAGTTGCTACCAGGAAAGAACTACAATTTGCTCTTCAC AGAAACCTTCAAAGTTCAAATGTATTATGACTAGGAAAACAAATGGACTCAGGTTTCCTCGGAAGACCAGGAGGAATATT ATATTTAATTGTGTTCCTAGCGAATTATCAAATCGACTACTAGATTTGTTGGTGAACAATAAGAATTGCCCTGCTACAGT CCTATGAAACTCCTAATGAAGTTTGACTTGTGCTCTGAAATTTTATTTTTTAGTGAGGATGGCTAATTTTCCAATCATGA AATCGGTAAACATAATGAGTGATGACTCTGCGTAGTATTAATTGCTATAGCTTGGCATATAAGTATAAACACACATGTTT TGTTTTCATTGCTTCATAAGGGATGGATTTTCAACTTTACAATCCTTTATCTTTCTTATGTGAGTGCTGGAAGTGATTAG ATGGAATATATATTTGTCAACATAAGAATTGGTTTTTTCAGTTAATGTCTGTGGACATATTTGTGATTCTGTAATGGGTC TTCTATCTTGATTTTCTAATTTGTTCGAAACATATCTTACTAACTTACAATGTCTTCTTTGGCAGTGGTGATCTTATTCA AAATTTCGGAATGAGTGTCAACACAACTATGACAACCATTGTAGGCCGTGTAATTTGTCCCCCTGAATTGAAGTTAGGTG ATCCAAATGGAAAAAATATCAAGATAACAGTGGACATGGAGAAGTGTCACTGGAACCTTGCTGGAAGATCAATGGTGGAA GGCAAAGCAATTGAGCGTTGGGGCATTCTTGACTTCACCAGTTATGGGCCTTATAAATACAAATTAAGAGCAAAGGAATT CATTCAAAAGCTTATTGGTAAATACAAAAAATTGGGTATAAACATGCAGGAGCCTATTTGGTATGAAGAATCTTCAACGA CGATACTTGCAAGTTATGACTTGCTATCTGAGTTACTTGCAAAAATAAACAACATTTGTAAATATAACCAAGGTCGCCTA CAATTTCTTCTTTGTGTAATGGCTAAAAAAAGTTCGGGATATAAGTACCTCAAGTGGATTTCTGAGACCAAAATTGGTAT AGTGACACAATGCTGCTTGTCCAGTAGTGCTAATGAAGGCGAGGATAAATTTTATACTAATTTGGCTCTCAAGATCAATG CCAAGCTTGGAGGCAGTAATGTGGAGCTCAGTAATAGGCTCCCTTACTTTGAGGGTGAAGGTCATGTTATGTTTGTGGGG GCTGATGTCAATCATCCCGGTTCTCGGGACACGAGGAGTCCATCAATTGCTGCTGTGGTTGCAACTGTTAATTGGCCTGC TGCAAATCGCTATGCGGCACGTGTTTGTCCTCAGTACAATCGATGTGAGAAAATATTGAACTTTGGGGAGGTTTGCCTTG AACTTGTTACATGTTATTGTAGAATAAATGGAGTCAGGCCAGAAAGAATTGTTGTTTTCCGCGACGGGGTGAGTGAATAC CAGTTTGACATGGTTCTTAATGAAGAGCTGCTGGATTTGAAGAAAGCATTCCAAAGATTAAATTACTTCCCTACAATCAC TCTTATTGTAGCACAGAAACGACATCACACTCGATTTTTTCCAGAGGGTTGGAGGGATGGGTCTTCTAGCGGTAATATTT TGCCGGGAACAATTGTGGACACCAAAGTTACACACCCTTTTGAGTTTGACTTTTATCTTTGTAGTTACTATGGTAGCCTA GGTACAAGTAAGCCTACTCATTACCATGTCTTATGGGATGAGCACAAGTTCAAATCTGATGAATTGCAGAAGCTCATATA TGAGATGTGCTTCACCTTTGCAAGATGTACTAAACCTGTATCATTAGTTCCTCCTGTGTACTATGCTGATCTTGCTGCTT ATAGAGGACGGCTATACCATGAAGCCAGGGTTGGGATGCAATCCCAGAAGTCAGCAGCATCTTCATCTTCCAAAGATTCA TTTGAACAGGGATTGTACAGGTTGCATGCTGACCTCGAAAACATCATGTTCTTCATCTGATGGACCTATCATCCACTCTT CTAGAAGTTGGGGAAATGCATACAACTTCTCTTATGTATAGACAATGTTTGCTTCCTGGGGTGTTTAATATGGATATGAA CTATAAGTACTACTTGTATCATTCTTATAAGGCTCAACTTAGATTATGTTTTTAAGAAAATATTTAAGGAGGTTAACTAA TATTTTTATTTTCAAAAAATGCAT
CDS sequence (LotjaGi6g1v0275900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTAGAGAGAAATTGTTCTCTGATGATCCCGAGAGGCTGCCATTGGATATGACTGCTTATGACGGTGCGAACACGAT ATTTAGTGCGGTACATTTACCGGAAGAGACGTTTACCGTGGAGATCACTGAAGGAGAGGATGAGAAGACTGTTTCGTATA GTGTTAGCATATCACTTGTTAACAAGCTCAGGCTTCGCAAGTTAATGGACTATCTTTGTGCGCACACCATCTCAATTCCT AGGGATATTTTACATGGGATGGATGTTGTGGTGAGAGAAAATCCAGCAAGGCGCACAATTTCTGTGGGACGACATTTCTA TCCTTCAAATCCTCCTTTGGTAATGAAGGATCTTCACCATGGAAATATTGCTGTAGGGGGGTTTCAGCATAGTTTAAAGC CTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCTGTTTTGGCTTTCCGAAAACAGATGTCAGTCTTGGATTTCTTG CACGAGTGCATTGATAATTTTAAATTGGTTGAATTTTATCACTTCAGGAAATATGTTGAGGAGGCACTTATTGGATTAAA AGTTAATGTGACCCACCGCAAATCCAAACAGAAATATGTTATAGCAGGATTAACTCCTAAAGTTACAAGGTATGTCACTT TCCCCATTGACGATACCAAGGGCTGGAATCTCTCTAAGGATGTTAGTCTTCTTAGCTTTTTTAAAGACAAATATGGCAAG GACATTGTATACAAAGATATTCCTTGCTTGGATTTAGGGAAAGGCAATAAAAAGAACTATGTACCCATGGAATTTTGTGT TTTAGTTGATGGTCAAAGATGTACCAGAGAGCATTTGGGTGGTGTTGCTGCAAACACATTGAAAGCAATGTCATTGGCTC ACCCAAATGAGAGGGAGAGTGCAATACAAAAGATGGTGCAGTCAAGTGATGGACCTTGCGGTGGTGATCTTATTCAAAAT TTCGGAATGAGTGTCAACACAACTATGACAACCATTGTAGGCCGTGTAATTTGTCCCCCTGAATTGAAGTTAGGTGATCC AAATGGAAAAAATATCAAGATAACAGTGGACATGGAGAAGTGTCACTGGAACCTTGCTGGAAGATCAATGGTGGAAGGCA AAGCAATTGAGCGTTGGGGCATTCTTGACTTCACCAGTTATGGGCCTTATAAATACAAATTAAGAGCAAAGGAATTCATT CAAAAGCTTATTGGTAAATACAAAAAATTGGGTATAAACATGCAGGAGCCTATTTGGTATGAAGAATCTTCAACGACGAT ACTTGCAAGTTATGACTTGCTATCTGAGTTACTTGCAAAAATAAACAACATTTGTAAATATAACCAAGGTCGCCTACAAT TTCTTCTTTGTGTAATGGCTAAAAAAAGTTCGGGATATAAGTACCTCAAGTGGATTTCTGAGACCAAAATTGGTATAGTG ACACAATGCTGCTTGTCCAGTAGTGCTAATGAAGGCGAGGATAAATTTTATACTAATTTGGCTCTCAAGATCAATGCCAA GCTTGGAGGCAGTAATGTGGAGCTCAGTAATAGGCTCCCTTACTTTGAGGGTGAAGGTCATGTTATGTTTGTGGGGGCTG ATGTCAATCATCCCGGTTCTCGGGACACGAGGAGTCCATCAATTGCTGCTGTGGTTGCAACTGTTAATTGGCCTGCTGCA AATCGCTATGCGGCACGTGTTTGTCCTCAGTACAATCGATGTGAGAAAATATTGAACTTTGGGGAGGTTTGCCTTGAACT TGTTACATGTTATTGTAGAATAAATGGAGTCAGGCCAGAAAGAATTGTTGTTTTCCGCGACGGGGTGAGTGAATACCAGT TTGACATGGTTCTTAATGAAGAGCTGCTGGATTTGAAGAAAGCATTCCAAAGATTAAATTACTTCCCTACAATCACTCTT ATTGTAGCACAGAAACGACATCACACTCGATTTTTTCCAGAGGGTTGGAGGGATGGGTCTTCTAGCGGTAATATTTTGCC GGGAACAATTGTGGACACCAAAGTTACACACCCTTTTGAGTTTGACTTTTATCTTTGTAGTTACTATGGTAGCCTAGGTA CAAGTAAGCCTACTCATTACCATGTCTTATGGGATGAGCACAAGTTCAAATCTGATGAATTGCAGAAGCTCATATATGAG ATGTGCTTCACCTTTGCAAGATGTACTAAACCTGTATCATTAGTTCCTCCTGTGTACTATGCTGATCTTGCTGCTTATAG AGGACGGCTATACCATGAAGCCAGGGTTGGGATGCAATCCCAGAAGTCAGCAGCATCTTCATCTTCCAAAGATTCATTTG AACAGGGATTGTACAGGTTGCATGCTGACCTCGAAAACATCATGTTCTTCATCTGA
Protein sequence (LotjaGi6g1v0275900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVREKLFSDDPERLPLDMTAYDGANTIFSAVHLPEETFTVEITEGEDEKTVSYSVSISLVNKLRLRKLMDYLCAHTISIP RDILHGMDVVVRENPARRTISVGRHFYPSNPPLVMKDLHHGNIAVGGFQHSLKPTSQGLSLCVDYSVLAFRKQMSVLDFL HECIDNFKLVEFYHFRKYVEEALIGLKVNVTHRKSKQKYVIAGLTPKVTRYVTFPIDDTKGWNLSKDVSLLSFFKDKYGK DIVYKDIPCLDLGKGNKKNYVPMEFCVLVDGQRCTREHLGGVAANTLKAMSLAHPNERESAIQKMVQSSDGPCGGDLIQN FGMSVNTTMTTIVGRVICPPELKLGDPNGKNIKITVDMEKCHWNLAGRSMVEGKAIERWGILDFTSYGPYKYKLRAKEFI QKLIGKYKKLGINMQEPIWYEESSTTILASYDLLSELLAKINNICKYNQGRLQFLLCVMAKKSSGYKYLKWISETKIGIV TQCCLSSSANEGEDKFYTNLALKINAKLGGSNVELSNRLPYFEGEGHVMFVGADVNHPGSRDTRSPSIAAVVATVNWPAA NRYAARVCPQYNRCEKILNFGEVCLELVTCYCRINGVRPERIVVFRDGVSEYQFDMVLNEELLDLKKAFQRLNYFPTITL IVAQKRHHTRFFPEGWRDGSSSGNILPGTIVDTKVTHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFKSDELQKLIYE MCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEARVGMQSQKSAASSSSKDSFEQGLYRLHADLENIMFFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 791 | 791 | 0.0 | – | |
| PANTHER | 1 | 791 | 791 | 0.0 | – | |
| Pfam | 3 | 91 | 89 | 5.7E-9 | ||
| SMART | 100 | 153 | 54 | 2.2E-11 | ||
| Pfam | 101 | 152 | 52 | 3.5E-9 | ||
| Gene3D | 148 | 275 | 128 | 1.8E-24 | – | |
| SUPERFAMILY | 149 | 308 | 160 | 3.3E-32 | ||
| ProSiteProfiles | 154 | 270 | 117 | 19.575 | ||
| SMART | 154 | 292 | 139 | 1.2E-4 | ||
| CDD | 154 | 269 | 116 | 2.92196E-21 | – | |
| Pfam | 157 | 279 | 123 | 1.8E-20 | ||
| Pfam | 297 | 343 | 47 | 1.0E-7 | ||
| CDD | 318 | 751 | 434 | 3.89249E-164 | – | |
| Gene3D | 367 | 515 | 149 | 4.0E-42 | – | |
| SUPERFAMILY | 446 | 753 | 308 | 7.84E-76 | ||
| ProSiteProfiles | 454 | 753 | 300 | 36.717 | ||
| SMART | 454 | 752 | 299 | 3.3E-103 | ||
| Pfam | 455 | 749 | 295 | 3.3E-85 | ||
| Gene3D | 523 | 791 | 269 | 3.3E-96 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0275900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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