Transcript — View — Lotus Base

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LotjaGi6g1v0276100.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0276100
Transcript ID	LotjaGi6g1v0276100.1
Lotus japonicus genome version	Gifu v1.2
Description	O-fucosyltransferase family protein; TAIR: AT3G05320.1 O-fucosyltransferase family protein; Swiss-Prot: sp\|Q18014\|OFUT1_CAEEL GDP-fucose protein O-fucosyltransferase 1; TrEMBL-Plants: tr\|I1MFZ7\|I1MFZ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0276100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:59293596..59296410) extracted from Lotus japonicus Gifu genome v1.2.

GTCAAATCCAATCCATAGTGTCCTTTATTTTAATTTATTTAATCAACCATTTCGAAAGAATTTCTTCTTTTCCATATCTC TCTGTCTAGTTGTACCTTTCCATGATCATTTGTTCCTTTAAACAACCCTCTTCTGTCCATTTTCTCTCTATTCCCAGCAC CTTTCTCCTTTTCCTCATCCCCATATATTCTTTTTGGGCTTCAAGGTGGTCCCTCTTACACTCATCATCAACCCCATTTG GTTCTTATCCCATTTGCTTTCTGGGTTTTTTACCACAACTCCCATGCATGTGATGCGCACCTATTCCCTCAGTCATTCAA TTCAAAGCTTTCCACAGGTAAAAAAATCAACATGCAAACGCTTTCATGGCTCTAATTCAATACATAATCCTATTATTTGT TGATTTTTAACGTTGGTTTAATAAGTCCTGTTCTTATTCGGATGTTTTGTTCTTGTGTTTCAAATGTCTTTACAGAATTA TGGGTTCTGATAGGGATAAGGCTATGATGCTATTGTTACGGAGATTCACATGTGTAGTGTGCCACTGTTTTGGCTTTTTC TGTATTGTTCTCTTTCTTAGGTTGAAGATAGGCACTGCATTGTTTTCTATTTCTTTTTCTTTTACAATGCAATTGCCATG AGATAAAGCTAAAGAACATTGAAGGTGTCTTCATAAATCAGAATCAAAATTCAATATTTTCACAATAAAATTCCATAAGT AATCTGGGGTAAGCAGATTTTGATGTTTTTCTTTTTTTAGCTTTTTGGAATGTGGTACTGTTAGTATAGACATTCATCTT GTTACTGGTGAAATCTCTACTTAAATTGTTGCTTTCTCATTATTCCTATTCTTTCAGATTGTGGGGGGCTTCAAAATTGG ATCCTGTCATGCTGCTCATGCACTGATGTTGATCTTTTGTGAGTCATATTCTGAGTTCTTAAATTAGAACAAATTGATGC TTTGCTTGGGAGAGTTATTCCTAATTCCTACATGGAAGTTTTGTCTAAGTTCTTGGGTGGCACTCTGAAATCAACAGCAA GCAAATGTATGGTTCTGTTTGTCACTGTTTTGATCCTTAGAGTATTGTTCCCTCCTTCCTTCCCTGGCTTTGATGGATTT GAATGGAGCAACTTTGTATATATCAACAGCCATTCTGAATTGGGAATTCGGCAAGATAAGTTTTTGGCGGTTCCCCAGCT CGTGTGGGGACTAAACAACCAGAAGATTGCATTTGCAAGAGCATGCCTCACTGCTAGAATGCTGAATCGAACCCTTTTGA TGCCTAGCTTCAGTGCCTCCCTGTTTTACAAAGAAATTGACCTCCTGCAACCCATTTCCTTTGATAAAGTGTTCCAATTT GATAAGTTTAACACGCTTTGCCGTGGTTTTGTTCGGTTGGGTTACTACTCAGATGTCTTGAATAGAACAGAAGTGCTTGA AATGCAGAAAGGGAGTGGAAGGAGGTGGACATTGGAGAGAGACTTATCACAATTGAAGGAGTATAGCATAGGCTCATTTG ATGACTATGAGGTAATCCGGATTGTAGGGAAAAACCCGTTCATGTGGCACGATCATTGGCATGTGAAGGACTATGCAAGG GTTTTTGAGTGTTTAGAAGTTATAGATGAGATTGCTCAAGAAGCTGATAGAGTTGTGTCTAGGATTAGAGAAGTTGGAAA AGAGGTAATAGGAAAAACTGAATCAGAGGAATTGAAAAAGAGTATCACCTCTGATAGTTCATCATTTCAGCCTCTTCCAT ATGTTTCTGTCCACATGAGGATAGAAATTGATTGGATGATTCACTGCAAGAAGCTAGAGCAGAGATTGAACACAAATCAA ATCTGCAGTAGCAAGAAAGAGATCATGGAAAGAGTTAAAAACATTGTTGGTTTGAAGACTCCGATTGTTGTTTATCTTGC AGTTGCTGATAAACTCCTTAACACTTCTTCCATAATGGAAGGTTGGGGAGATGGGTTTCTTCCTTTTGAGAAGAAGAAAC TTGCTGTAGATGGAATTTATAAGAAGTATCCATATCTAATTCAATCCGCAATCGATTACGAAGTGTGCTTGCGGGCCGAT ATCTTTGTGGGAAACAGTTTCTCTACATTTTCAAGTCTTATAGTTCTTGAAAGAACACAGAAGATGATCAGAACCAGTGT GACCAGCATGTGTGGAACTGATGTAAGATGGCCTTCTTATGCTTACAATCTAGCAGGAGAATCAAATGGTCCAATGAGAT GGATTACAAATATGTCTGATTCAAGTCTTCAAGCAATTAGCTATGGCACCAATCATATCTCTTCTTGCAAGGACCATATT TTAATTTAATCCCTGTTGCTAATATCAAAAGTCAAATTAAGACTAGTTTAAGAGGCCCCTTCTCTAATGTCTCAACACTT TCACTTATGAAGTTTGATTAGCACACTCCCAAAAAAAGAAAAAGTAGATATTAAATTGGAATATAGCTGTTCTGTTTTCA CTGAGGTATAGTGTCTTGTTATGTAAATTTTAACAACTTACTTTGAAGTGGTTTTCTGAGATGTATTGAATGTCAGATTG TTAAATAACGTCCCTTCAAAAGGGTAAGTTTTGCTTTCTTTTGAAATTTCTGTTACTAATTGATGGTGTGACAACTGCAC AAGCTATCTGTTGGACATGTCTATTTGTTGTACATTTGAGAGAACATAATGTGGACCCTATTTACATATGTAGTTCATGT ATATGATGTTGTGGAAGTTCCATCTTTGGAAATAATTTGCGGGGTGCCCCACTGTAGTGGGGTCTTTTACATTTGCAGAC CCTTAAACACAGTCA

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0276100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGTTTTGTCTAAGTTCTTGGGTGGCACTCTGAAATCAACAGCAAGCAAATGTATGGTTCTGTTTGTCACTGTTTT GATCCTTAGAGTATTGTTCCCTCCTTCCTTCCCTGGCTTTGATGGATTTGAATGGAGCAACTTTGTATATATCAACAGCC ATTCTGAATTGGGAATTCGGCAAGATAAGTTTTTGGCGGTTCCCCAGCTCGTGTGGGGACTAAACAACCAGAAGATTGCA TTTGCAAGAGCATGCCTCACTGCTAGAATGCTGAATCGAACCCTTTTGATGCCTAGCTTCAGTGCCTCCCTGTTTTACAA AGAAATTGACCTCCTGCAACCCATTTCCTTTGATAAAGTGTTCCAATTTGATAAGTTTAACACGCTTTGCCGTGGTTTTG TTCGGTTGGGTTACTACTCAGATGTCTTGAATAGAACAGAAGTGCTTGAAATGCAGAAAGGGAGTGGAAGGAGGTGGACA TTGGAGAGAGACTTATCACAATTGAAGGAGTATAGCATAGGCTCATTTGATGACTATGAGGTAATCCGGATTGTAGGGAA AAACCCGTTCATGTGGCACGATCATTGGCATGTGAAGGACTATGCAAGGGTTTTTGAGTGTTTAGAAGTTATAGATGAGA TTGCTCAAGAAGCTGATAGAGTTGTGTCTAGGATTAGAGAAGTTGGAAAAGAGGTAATAGGAAAAACTGAATCAGAGGAA TTGAAAAAGAGTATCACCTCTGATAGTTCATCATTTCAGCCTCTTCCATATGTTTCTGTCCACATGAGGATAGAAATTGA TTGGATGATTCACTGCAAGAAGCTAGAGCAGAGATTGAACACAAATCAAATCTGCAGTAGCAAGAAAGAGATCATGGAAA GAGTTAAAAACATTGTTGGTTTGAAGACTCCGATTGTTGTTTATCTTGCAGTTGCTGATAAACTCCTTAACACTTCTTCC ATAATGGAAGGTTGGGGAGATGGGTTTCTTCCTTTTGAGAAGAAGAAACTTGCTGTAGATGGAATTTATAAGAAGTATCC ATATCTAATTCAATCCGCAATCGATTACGAAGTGTGCTTGCGGGCCGATATCTTTGTGGGAAACAGTTTCTCTACATTTT CAAGTCTTATAGTTCTTGAAAGAACACAGAAGATGATCAGAACCAGTGTGACCAGCATGTGTGGAACTGATGTAAGATGG CCTTCTTATGCTTACAATCTAGCAGGAGAATCAAATGGTCCAATGAGATGGATTACAAATATGTCTGATTCAAGTCTTCA AGCAATTAGCTATGGCACCAATCATATCTCTTCTTGCAAGGACCATATTTTAATTTAA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0276100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEVLSKFLGGTLKSTASKCMVLFVTVLILRVLFPPSFPGFDGFEWSNFVYINSHSELGIRQDKFLAVPQLVWGLNNQKIA FARACLTARMLNRTLLMPSFSASLFYKEIDLLQPISFDKVFQFDKFNTLCRGFVRLGYYSDVLNRTEVLEMQKGSGRRWT LERDLSQLKEYSIGSFDDYEVIRIVGKNPFMWHDHWHVKDYARVFECLEVIDEIAQEADRVVSRIREVGKEVIGKTESEE LKKSITSDSSSFQPLPYVSVHMRIEIDWMIHCKKLEQRLNTNQICSSKKEIMERVKNIVGLKTPIVVYLAVADKLLNTSS IMEGWGDGFLPFEKKKLAVDGIYKKYPYLIQSAIDYEVCLRADIFVGNSFSTFSSLIVLERTQKMIRTSVTSMCGTDVRW PSYAYNLAGESNGPMRWITNMSDSSLQAISYGTNHISSCKDHILI

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	14	14	-	–
PANTHER	PTHR37220:SF2 View details on PTHR37220:SF2 Search for proteins/transripts with this domain View external data on PTHR37220:SF2	1	439	439	2.1E-270	–
PANTHER	PTHR37220 View details on PTHR37220 Search for proteins/transripts with this domain View external data on PTHR37220	1	439	439	2.1E-270	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	15	33	19	-	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	34	445	412	-	–
Pfam	PF10250 View details on PF10250 Search for proteins/transripts with this domain View external data on PF10250	73	382	310	1.6E-25	IPR019378 Show description in modal box View details on IPR019378 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd11296 View details on cd11296 Search for proteins/transripts with this domain View external data on cd11296	194	382	189	1.26027E-22	–
Gene3D	G3DSA:3.40.50.11350 View details on G3DSA:3.40.50.11350 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.11350	213	394	182	5.2E-13	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0276100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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