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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0278400 |
| Transcript ID | LotjaGi6g1v0278400.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA damage-binding protein 1; TAIR: AT4G05420.1 damaged DNA binding protein 1A; Swiss-Prot: sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a; TrEMBL-Plants: tr|I1K4D0|I1K4D0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0278400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59516274..59521956) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTAAACATGTATAACAGTATAAGACAATATTTGTAGTGTTGAGGTTTTGAGACCCACATGTCTTGTATTATTGCAGT TTGAGTTTATGATTGGGCATTCATATTCTTGCATAACATTATCTATTCAATGTTTCTATGATTTTATTGCAGCTGTATAT TTTATATTTCCCTTATGTAATATATTTGGTTGGAAACATAACTGCTTTTAACATAACCATTTTGTTGACTTTGGTATTAT ATTTAATTAATGACAGGACAACAAAAATGCTCGTCATGTGAAAACGTATGAGGTTGATCTGCAGGACAAAAATTTTGTTG GGGGTCCATGGTCCCAGAACAACCTTGATAATGGGGCTAATTTATTGATACCAGTTCCCCCCCTCTTTGTGGTGTGCTTA TTATTGGTGAAGAAACCATAGTATACTGTAGTGCTACTGCTTTCAAAGCTATCCCAATCAAACTCGGACCTGTATGTAAA AAGACTATTTGCTACTTTCATTTAGATCATCTGCATTCTTCAGTGAAATTTTAATTTTGGTGAACTGTATCTATATTACA ATTTTTTGGACTTATCTAAATTCTACCATATGATCTGCTTTTCAGTCACTTACAAAAGCATATGGAAGAGTTGATTCTGA TGGTTCTAGATATTTACTTGGTGATCTCACAGGAGCGCTTAATCTTCTTGTATTAACCCATGAGAAAGAAAAGTAAATGA CCACCCATTGTCTTGTTTTACTTTTGTCTTAACAGATTTATTAATTTTCTCTGTGCACAAATTTGATGATTAAAGTAGTA ATCTGCATTTTATCTTGAAAAACCAACGATGCAGTTTTTAACTTCTGAATATTATGGTTTGTCATGTACATTTTTATTTT GTAGGGTTACAGGACTGAAAATTGAGCCCCTTGGGGAGACTTCCATTGCATCTACAATATCATACCTTGATGATGCATTT GTCTACATTGGTTCATGTTATGGAGATTCTCAGGTGGGATAGTAAATTTAAACATTATTGTATAAATGTTTATGAAGTCC ATATGCATATGGAATTTTAATTTTATCCAAAATTCTGATTCCCCCAACTCCTTCTTATGAACTTAGTATGGAGACTCTGG AATATTTATTATTTATATGTGAAGTGGAGTCTGCATATTATGTTGGAAGTTGGGTAATTGCCTATGTTGAAGAGGCTTTT GAAAATGTTGCTTAAAAAATACTCCCTCCGGTCCTATTTATAAGCAACAAAAAAAAAATTCACATAGTTTAAGAAATGTA GTTAAACTAGATAAAATGCATTAAATTTGTCTTGAATAAAAATAAACTTCCAAAATTACCCTTTGTTATTAGTGTTGGAA AGTGAGAAAGAGAGAGAATAATTAATGAGACACATTTTACAAGTTAGAATTAATAAGGGCATCATTGGAAAAAAATAATT AATATAGCTCAAACTTTCATTTGGTTCTTATAAAAAGGACCAAGATTTTTCTTCTCTTTCATGCTTATAAATAGGACCGG AGGGAGTATATGCTATCACCCCACACATAATTTAACAGCATATGTATGGCAAATATTTAGCATTTCAACTTCATGACATA AAAAGTGAAAACATAAGTCAACAAGACAAATTAATGATCACCGCTTCCTGTTCTTAGCTTCTTCACCAAAATCTCATTTA GGTATTTGATGTGTTTTCTTCATATTTTGAAATGTATTATGACTTATCCTTAGCTGTTTACTTTTACGTGCATATTCAGA CATGCCATTAACAATTTCTGATGGATGCAATTCAGCTTATAAAACTAAATCTACAGCCTGAGGTAAAAGGCTGTTATGTG GAAGTTTTGGAAAGGTATGCGAATTTAGGGCCAATTGTTGACTTCTGTGTGGTAGACCTCGAAAAGCAAGGCCAAGGTCA GCTTGTAACCTGCTCTGGAGCTTACAAAGATGGTTCTCTTCGCGTTGTTTGTAATGGAAGAGGGATCAATGAGCGGGTCA GTTCCCCTTCCTATCCGCCCAGAATGGGACTTCTGTACCTAAGAAATTTTAAGAAGAGATAAATTAAACTGTATCAAGCA ACACATGTTTTGTAAAATATTATTTTATTGATGTAGGCATCTGTAGAACTTCAAGGTATCAAAGGAATGTGGTCATTAAG ATCCTCAGCAGATGATCCTTTTGACACTATCCTGGTTGTGAGTTTTATAAGTGAAACGAGAATCTTAGCAATGAATATTA AGGATGAGCTGGAGAAAACTGAGATTGAGGGATTCTGTTCTCAAGTACAGACATTATTTTGCCATGATGCAATTCACAAT CAATATGTACAAGTAGGTTCTGATCTTATTTTCCTGCTTTGGTATTTTTCTTCTATTCTTGTTGATTTTAACGCCTGCAT CTCTCTATCTAACTCTTAAATGAAGTCAGATTTATTAAAAGAAGATAATCAAGATATATCTTGTGCACATGCAGACAACT TCATTAAGTGGGATAAGGCTCAGTTGTTGTTGATGCTGTCTTTGATATTTTTCTTTTGTTTGAAAAATATAATATAATGA AGGGAATTTGATTCAGAGTGTGAGGAGAATACGCTGATATTGATGGGTCTTAATCTGAGTCATAAAAGAATTGGAATCCA TTGTAATTGAAAGAAACAGATTTGAAATTATGCTTTATGTTTCTGGAAGCTTCTTGTAAATGCTTAAGACTTGCATGGTC GATTATAGTTTGTCTGTAATCTTCGTAAGTTGATACTATAAATTTACATTCATCATTTGCATGCTTCTTTGTTTTTTTTT TTTTTGCTTATTTATTTTGTTGAAATGATAGCTTCCAATCATTAGCTAATAAACCAACATAACAGGTCACCTCAAGCTAT GTAAGACTGGTTAGTTCCACAACTAGGGAGCTCCGGAATGAATGGCATGCACCAGAAGGCTATTCAGTAAATGTAGCTAC TGCAAATGCTACCCAGGTTTGATTCTTATTTTAAAAAAAAAATATTACATTTTAAACTATAGGTGATATTTCTTGGTGAT ACCTCTTGATTCTCCAATTACTCTTACATTAACACACATGTCAGATGTTGGATTTTACTATCTAAACACAACTAAGTTTG TATCGAGTTGGTAATTATTGTTACACCTGGATTCAGGTTTTGTTGGCCACAGGCGGTGGACATTTATTTTACCTTGAAAT TGGAGATGGCATACTACGGGAAGTAAAGCGCACCCAACTGGAGTATGAGATCTCATGCCTAGACATAAATCCAATTGGTG AAAACCCCAATCAGAGTCATCTAGCAGCAGTTGGAATGTGGACTGACACAAGTGTTGGAATTTTTTCTCTTCCTGACCTG AATCTCATCACAAAGGAGCATTTTGAAGGAGAGAAAATACCTCGATCTGTTCTTCTTTGTGCGTTTGAAGGGGTGCGCTT TCCTTGACCTATCTTGTTGTGTACTGGTTTTTTTGCTTCTGCGTAGGGCATACTAATTTTAAAAAAAAATGCCCGAATAC CATTTGGGGTGCTCATCTCCTAAGTTCTAATTTTAGAATGGGTATTTCGGATTTTACACATTCAAATGGTTTTGGTGGAA TAAGCAAGATCAGCAACATTAATGTCTATTTTACAATTCTGCTCAAGTTACATATTTATCTAATGATGCTCCAAGGATTG ATGACACATCTGCTAAGCTTCCAACTTATCTTTCTTAATTTTAATTGTAGTTTCCTAGTTTAAAGATTTCTATTAAAGTG TGTTTCTCTTTTCATATTGTTCTCCAGATATCTTACTTGCTATGTGCCCTTGGTGATGGTCATCTCTTAAACTTTATGTT GAACACAAGTTCTGGTGAGTTGACAGATAGGAAAGAGGTCTCTCTTGGCACACAACCTATTACACTATGGAATTTCTCAT CCAAGAATACTACCCGTGTTTTTGCTGCATCGGATCGGCCAACTGTGATTTATAGTAGTAACAAAAAATTACTATATAGT AATGTGAATCTGAAGGAAGTGAGTCACATGTGCCCTTTCAACTCTGCTGCTTTTCCAGACAGGTACGGTTGTCTTTTTTA GCTTGACATCCAAGAATGGTTGATTTATCCCATATTGTTGTTTCTGGGCCTTGTACTTTTGATGCAAAATCCATTATCGG TGATAGTACTTTGCCCCTCATAATTTCAACAGTTTGGCAATTGCAAAAGAAGGTCAGCTCACTATTGGCACCATTGATGA CATTCAAAAACTTCATATTCGCTCAATTCCACTGGAGGAGCATGCACGGCGTATCTGTCACCAGGAACAATCCAGGACTT TTGCTATTTGTAGTTTGAAGTCCCCTACAAGTGCTGAAGAATCTGAAACGCACTTTGTTCGCTTGCTGGATGACCAGTCT TTTAAGCTCATATCGACTTATCAACTTGACTATTACGAGTACGGTTGCTCTGTAATTAGCTGCTCCTTCTCAGGTGATAA TAATGTGTATTACTGTGTTGGAACTGCATATGTATTGCCAGACGGAAATGAACCAGACAAGGCAAGTTGAGAAATCTATA TTATTTTCAGCTTTGATCTAGTCAAAGCCTCTGATATCCTGATTCATTGGCCTTTTCTAAACAAATGTAGGGAAGAATTC TTGTTTTTACTGTTGAAGATGGAAAGCTACAACTAATTGCTGAGAAAGAGACTAAAGGAGCTGTTTATGACTTGAATGCG TTTAATGGTAAATTGCTTGCTGCTATTAATCAAAAAGTTCAGCTGTATAAGTGGGTGCTCCAGGATGATGGCACCCATGA GTTACAGCCTGAATGTGGATTTCATGGACACGTCCTAACTCGATATGTGCAAACTAGAGGAGATTTCGTTGTAGTTGGCG ATCTGATGAAATCAATTTCCGTATTAATATATAAGGTAAGCCTCTAAGTGGTCTTAATGCTGAAGTTCATTTGCAAATGA ATTTACTATCTTCAATATAACTTTTCTAACCATGCCATTTACTTTGTTTTTGTTGAATTTTGAACTGCTATGATCCTTAT TGTGGATGAATAGTTAATTTTCTGGATATTTGCTCCATTTTCTTTTGGAATGATAAATTGTTGCTCTTTATTATTTAAGC ATGAAGAAGGTGTTTTTGAGGAGAGAGGTCGGGACTACAATGCAAATTGGATGTCAGCTGTTGAAATCCTTGATGATGAC GTATACCTTGGCGCGGAAGTTAGCTTCAATCTCTTTACAGTTGGGAAAAATAGTGAAGCATATCCAGGTCGTCTGGAAGT ACTTGGTGAGTATCACCTTGGAGAACTTGTCAATCGGTTCCGGCATGGCTCCCTTGTCATGCGCGACGATGGTGCAGGAA AGATTCCAACTGTTATCTTTGGCACCATTAATGGTGTTATTGGGGTAATTGCTTCTCTTCCTCATGAGCAGTATGTTTTC TTAGAGAAGCTTCAGTCAAACTTGAGGAAGGTGATTGAAGGCGTTGGAGGACTAAGCCATGAGCAATGGAGATCATTCAA GAATGAGAAGAAAACTGTGAAGGCCAGAAACTTTTTGGATGGGGATTTAATTGAATCATTTCTTGATCTCAACCGCAGTA AGATGGATGAGGTTTCCAAGGCATTGGATGTTTCTGTAGAGGAGTTAATCAAGAGAGTACAAGAGTTGACTAGGTTGCAC TAA
CDS sequence (LotjaGi6g1v0278400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGTCATTAAGATCCTCAGCAGATGATCCTTTTGACACTATCCTGGTTGTGAGTTTTATAAGTGAAACGAGAATCTT AGCAATGAATATTAAGGATGAGCTGGAGAAAACTGAGATTGAGGGATTCTGTTCTCAAGTACAGACATTATTTTGCCATG ATGCAATTCACAATCAATATGTACAAGTCACCTCAAGCTATGTAAGACTGGTTAGTTCCACAACTAGGGAGCTCCGGAAT GAATGGCATGCACCAGAAGGCTATTCAGTAAATGTAGCTACTGCAAATGCTACCCAGGTTTTGTTGGCCACAGGCGGTGG ACATTTATTTTACCTTGAAATTGGAGATGGCATACTACGGGAAGTAAAGCGCACCCAACTGGAGTATGAGATCTCATGCC TAGACATAAATCCAATTGGTGAAAACCCCAATCAGAGTCATCTAGCAGCAGTTGGAATGTGGACTGACACAAGTGTTGGA ATTTTTTCTCTTCCTGACCTGAATCTCATCACAAAGGAGCATTTTGAAGGAGAGAAAATACCTCGATCTGTTCTTCTTTG TGCGTTTGAAGGGATATCTTACTTGCTATGTGCCCTTGGTGATGGTCATCTCTTAAACTTTATGTTGAACACAAGTTCTG GTGAGTTGACAGATAGGAAAGAGGTCTCTCTTGGCACACAACCTATTACACTATGGAATTTCTCATCCAAGAATACTACC CGTGTTTTTGCTGCATCGGATCGGCCAACTGTGATTTATAGTAGTAACAAAAAATTACTATATAGTAATGTGAATCTGAA GGAAGTGAGTCACATGTGCCCTTTCAACTCTGCTGCTTTTCCAGACAGTTTGGCAATTGCAAAAGAAGGTCAGCTCACTA TTGGCACCATTGATGACATTCAAAAACTTCATATTCGCTCAATTCCACTGGAGGAGCATGCACGGCGTATCTGTCACCAG GAACAATCCAGGACTTTTGCTATTTGTAGTTTGAAGTCCCCTACAAGTGCTGAAGAATCTGAAACGCACTTTGTTCGCTT GCTGGATGACCAGTCTTTTAAGCTCATATCGACTTATCAACTTGACTATTACGAGTACGGTTGCTCTGTAATTAGCTGCT CCTTCTCAGGTGATAATAATGTGTATTACTGTGTTGGAACTGCATATGTATTGCCAGACGGAAATGAACCAGACAAGGGA AGAATTCTTGTTTTTACTGTTGAAGATGGAAAGCTACAACTAATTGCTGAGAAAGAGACTAAAGGAGCTGTTTATGACTT GAATGCGTTTAATGGTAAATTGCTTGCTGCTATTAATCAAAAAGTTCAGCTGTATAAGTGGGTGCTCCAGGATGATGGCA CCCATGAGTTACAGCCTGAATGTGGATTTCATGGACACGTCCTAACTCGATATGTGCAAACTAGAGGAGATTTCGTTGTA GTTGGCGATCTGATGAAATCAATTTCCGTATTAATATATAAGCATGAAGAAGGTGTTTTTGAGGAGAGAGGTCGGGACTA CAATGCAAATTGGATGTCAGCTGTTGAAATCCTTGATGATGACGTATACCTTGGCGCGGAAGTTAGCTTCAATCTCTTTA CAGTTGGGAAAAATAGTGAAGCATATCCAGGTCGTCTGGAAGTACTTGGTGAGTATCACCTTGGAGAACTTGTCAATCGG TTCCGGCATGGCTCCCTTGTCATGCGCGACGATGGTGCAGGAAAGATTCCAACTGTTATCTTTGGCACCATTAATGGTGT TATTGGGGTAATTGCTTCTCTTCCTCATGAGCAGTATGTTTTCTTAGAGAAGCTTCAGTCAAACTTGAGGAAGGTGATTG AAGGCGTTGGAGGACTAAGCCATGAGCAATGGAGATCATTCAAGAATGAGAAGAAAACTGTGAAGGCCAGAAACTTTTTG GATGGGGATTTAATTGAATCATTTCTTGATCTCAACCGCAGTAAGATGGATGAGGTTTCCAAGGCATTGGATGTTTCTGT AGAGGAGTTAATCAAGAGAGTACAAGAGTTGACTAGGTTGCACTAA
Protein sequence (LotjaGi6g1v0278400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWSLRSSADDPFDTILVVSFISETRILAMNIKDELEKTEIEGFCSQVQTLFCHDAIHNQYVQVTSSYVRLVSSTTRELRN EWHAPEGYSVNVATANATQVLLATGGGHLFYLEIGDGILREVKRTQLEYEISCLDINPIGENPNQSHLAAVGMWTDTSVG IFSLPDLNLITKEHFEGEKIPRSVLLCAFEGISYLLCALGDGHLLNFMLNTSSGELTDRKEVSLGTQPITLWNFSSKNTT RVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGQLTIGTIDDIQKLHIRSIPLEEHARRICHQ EQSRTFAICSLKSPTSAEESETHFVRLLDDQSFKLISTYQLDYYEYGCSVISCSFSGDNNVYYCVGTAYVLPDGNEPDKG RILVFTVEDGKLQLIAEKETKGAVYDLNAFNGKLLAAINQKVQLYKWVLQDDGTHELQPECGFHGHVLTRYVQTRGDFVV VGDLMKSISVLIYKHEEGVFEERGRDYNANWMSAVEILDDDVYLGAEVSFNLFTVGKNSEAYPGRLEVLGEYHLGELVNR FRHGSLVMRDDGAGKIPTVIFGTINGVIGVIASLPHEQYVFLEKLQSNLRKVIEGVGGLSHEQWRSFKNEKKTVKARNFL DGDLIESFLDLNRSKMDEVSKALDVSVEELIKRVQELTRLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 136 | 136 | 2.6E-28 | – | |
| PANTHER | 1 | 680 | 680 | 0.0 | – | |
| PANTHER | 1 | 680 | 680 | 0.0 | – | |
| Gene3D | 1 | 302 | 302 | 3.7E-208 | ||
| Coils | 21 | 41 | 21 | - | – | |
| SUPERFAMILY | 66 | 462 | 397 | 2.56E-12 | ||
| Gene3D | 303 | 569 | 267 | 3.7E-208 | ||
| Pfam | 344 | 650 | 307 | 1.5E-73 | ||
| Gene3D | 596 | 681 | 86 | 2.1E-29 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi6g1v0278400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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