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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0279100 |
| Transcript ID | LotjaGi6g1v0279100.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT3G13340.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9Y7K5|YGI3_SCHPO Uncharacterized WD repeat-containing protein C2A9.03; TrEMBL-Plants: tr|A0A151T6B1|A0A151T6B1_CAJCA Putative WD repeat-containing protein C2A9.03; Found in the gene: LotjaGi6g1v0279100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59595361..59599626) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTCAGTTCAATGGGGATGAAATGGAGTATGCTGCAGATGAAAATGAAATGGCGGAAGTAGAAGATGATGTGTATTT CCGTGGCAGAGGATATGGTGAATCGGATTCAGATGATGATGAAGATGATGAATATGACCCTCTGGTTTGTTTTCGAGTCA TAAGCAAAGCGTTGGTTATCATATGAATTTGAGAATTTCATTTTGGTGTGATGTTGTTCATTCTCACTGTGAAGCCCTTT TTGAACGTGTTATGCCACTTGTGTGTGTGTGTGTGTATTTTTTGTTGCATATGTATTGTTTCTGTGTTACGGTTTGTCTC CATATTCATAGATTGACTTAAGTTCGCATGATTAATATTTACTACCTTACAACCATTGACATGATATTTCCATCTGTTCA CACTTTTTCTTGGGGTGGGGGCTTTGTGCTCCTTGTTACAGGAAAACAGAATAACAGATACCACTGCTGCTGAAGCTAGG AGGGGAAAGGATATTCAAGGTATACCTTGGGATAGACTGAGTATTAGTCGTGAAAAATATAGACAAACTAGACTAGAGCA GTACAAGAATTATGAAAATATACCCCAATCAGGGGAACTGTCAGAGAAGGTAACTTTGTCTTGCTTAAAGTTTGGAGGCA CTTTAGTAATGATTCTGAGGATATCTTTTGACCCTATACTTTTTTTCTACTTGTCTACAGGAATGCACACCCACAGATAA GGGTGGAATGTATTATGATTTTTGGCAGAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAAGTATGTTGTTTTA GTAATTGTTTTCTTTGAATCATGCGAGGATGTGATAAAGATTTGCTTGGTCTACACTCATATTATCTTGTCTTTTTTGGA AAGCCTTGTGCCTGCATGTATACCTTGTGATATCTGATAATGTTTTTTTTTTGGTTATGTGGGGATATGTGTTTATGTTT TTCAATTTCCTTCTGAATTTCAATTATACGATTATTGCCAATAATTTAAGTAACATTAATGTGAAGCCTTTAATTTATCA TTTTCAGTTGAGGAACTTGGTTTGGTCGACATCAAAGCATGATGTATATCTTGTTTCACATTACTCAATTGTTCACTGGT CTTCATTAAATTCTAAAAGATCTGAAGTCTTGAATGTATCAGGGCATGTAACTCCGTGTGAGGTAATAATTTTTGCACTG TTTTGGATTTGAAAGTATCAAATAGAAAACACATCTGAGTTACCAAATGTATGTTGCTTACAGAAACACCCAGGAAGCCT CTTGGAGGGTTTCACACAGACACAAATAAGTACACTGGCTGTACGAGATAACTTGTTAATTGCTGGAGGCTTTCAAGGGG AACTTATTTGCAAGGTACGTCATTTTTACTTCTAGTTTTCTTATTTTTTTTTATTTGTTACTTATAATGCACTTAAGCTA CAGCTTCACTTTTCCATGTATCATGGACATTGAGATACATCATATATAATATTACCATTTTTCCTGCTTTTGTTGCACAA ATTAGTGTATGCAGCTTATTTTTTGATATGATTAATTGATATATGATTAAAAATGGGAACAATCTGCCTATCTTTATTTT GTTTATTTATCTTTGATCTTCTAAATTAAGGTATTGGTTCAATATTTTTCTGTTGATTGATGATATATGTGATGTCTTGC AGTACTTAGATAGACCCGGGGTTAGCTTTTGTTCCCGAACTACTTATGAGGACAATGCAATTACTAATGCTGTTGAGATT TATGACAATCCCAGGTCTTTCTTCTCTTTTTCTCTATTGTTCTCTTCCTTTAATTGATTTTTTTTCTGGTCTCGAATTGT TGAAATGATGGTTTCAATCATTGGTCGCAATGCTTTAGTGTGGCTGCTTACTAACAATCAATTGATCTGTCAGTGGAGCT GTTCATTTCATGGCTTCAAACAATGACTGTGTTGTTAGAGACTTTGATATGGAGAGATTTCAGCTTTCAAAGCATTTCAG CTTTCCTTGGCCAGTAAATGTAAGTACCTCTACTTGGTTTTCCATGTCTGAAAAATACATTAGCATTATTGCTAGTACTG AATCCAAGATTTTTGGCAAATCTAGAATTAGCATGTTAGCATGCTTTGCTAGTTTAGACTACTTTAGGATTACAGTGGAA TGAGTAGAGGGAGATTGAAGGTGAAGAATAAAATCCAGGTTGCAAAGAACAAATTCTTGATTCCAATGTGATTTTAATTA TGCTTAGTAGATACATTTTACCTGCATTTTCGTTTTGGTTCTTGCTAAGATTTAGTTTATCATTTTGTGACTAAAGCATT TTAGTTGCTGGGCTTTATTGATTTTTTGGGAATTGAAATTTTTAAAGCTGACTTTAATATTTTTTTATAAAAGAGTTGGC TTTATGTGAACTTGACTCACTTGAGGTTGAGTTTGTCTCTGAAGATTTTACAGAAATTTAGTGTTCTATATTTGCATTAT TTTTTTGATGATTTTGACTATGTACTTCTTTTACGTACTGACTGGCTGGCCAACTGTTTAATTTTGAATATCCTTTCTCG ATTAATTGGGGCAGAACTCCCTGTATGTGTTGAAAACTTGGAAGGGTGAAGTTCTGAATTAGATAGCCAACTAAAGAATC ATATAATGACTATTGAAATGAGAATCCTTCACTTTCTGTCAATCATCTTTCTTAAAACCTTAGTGCTGTTATCTTTAAAG TATAAAAGGAGGAAATTTGAGGGTCTAATTAGTTTGAGATTATTTTTATTTTTATTTTCATTTTTCACTATTAATTGCAA AATACCATCTTTCATTTTTCCTGTTTTCACGTAATGTATAATCATTGTCGTATTTTTGTAATTAAAATTGAAAATAGAAA TAATTTTCTCAAACCAAATAGGCCCTTAATAACTTTCACACACATCTATATTTTAGAAACTCCTTACAAATACAAAATAG GAGCATAATGTGTAGGTTACAGCTTATGGTTAAAGTTTAAAAAGTAGAAAGTTGAGAATAAGTGCGTCTGCCGAGCCTTG AACATTTATGTAAGAGGGAATAATGAAAAATGAATGGACTGGAGAAGGGTGGACCAAGGGAGTACATGTGTATGAGTGGA GAGGGACGAATGTTGTATGAGTTAGGTGGGAATGAAGGAGGGAGAGTGTAACAGCGCCCACATGAAATTGAAGAGGGAAA TTATGCAATGATGTGAGTGAGTAAAGAAGGAATTTTGGAGAGTGTTTTGGCGGCCTAGGCCACAGAGGGCAGAGTCTGTG AATTCAGCTCTTAATGTCTCTCCTTTACTACATTTTCCTATCTTTTCTGCTCAATTCATCTGTTACTGGACAGAATAGTT TTCATTTGTAAATTAGAAATTCTCCTTCAAATTTATCTTATCTAGTGTATAATTCCAGTCCCGATCAATGTCTATATATA TATATTCCTTATTTTCTCTCTGCATTTGCATTGCGGGTGCCCACTACTAGTATTGGATGATATGATATGAATATCTACTT GTGAATCGCATTGATATCTGAATTTGTGCCCTTTCTTTCTGCAGCATACTTCATTGAGCCCTGATGGGAAACTAATTGCA ATTGTTGGAGACAACCCAGAATCGATACTGGTGGATTCTCAAACTGGAAAGGTTGGCATGGTCATTCTGTCTGTGTTACA AATTCCTGCTTGTATATTTCTTTAAAGAGGGCAGTTTAGAATGAGATGAGGGTGCAGGTGAAAGTGCCAAGTTGTTAAGA GCTATGAATATCTAATTATAATTTTTGCTGTCTTTGTAGACTATGGGATTTTTATGCGGACACTTGGATTATTCATTTGC ATCTGCATGGCATCCTGAGGGCCGTATTTTTGCCACTGGGAACCAAGACAAAACATGTCGCGTTTGGGATGTTCGAAACT TGTCGAAGTCTGTTGCTGTTCTTAAGGGAAACCTTGGAGCTATACGCTCGATACGGTTCTCATCTGATGGACAGTTCATG GCAATGGCTGAGCCAGCTGACTTTGTGCATGTATATGATGCAAAGCATGGGTTTGAGAAGGAGCAGGAGATTGATTTTTT TGGGGAGATCTCTGGTGTATCTTTTAGCCCTGACACAGAATCACTTTTTATTGGTGTTTGGGATCGCACCTATGGAAGCC TTCTTCAGCTCAATCGGCGCAGAAACAATATGTATCTCGACTACTTGTAAATCGGTAACCTACAGCTTGTAAGTACCTAC AGCTAATGTCCTTTTCTAGTTTTTAG
CDS sequence (LotjaGi6g1v0279100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCAGTTCAATGGGGATGAAATGGAGTATGCTGCAGATGAAAATGAAATGGCGGAAGTAGAAGATGATGTGTATTT CCGTGGCAGAGGATATGGTGAATCGGATTCAGATGATGATGAAGATGATGAATATGACCCTCTGGAAAACAGAATAACAG ATACCACTGCTGCTGAAGCTAGGAGGGGAAAGGATATTCAAGGTATACCTTGGGATAGACTGAGTATTAGTCGTGAAAAA TATAGACAAACTAGACTAGAGCAGTACAAGAATTATGAAAATATACCCCAATCAGGGGAACTGTCAGAGAAGGAATGCAC ACCCACAGATAAGGGTGGAATGTATTATGATTTTTGGCAGAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAAT TGAGGAACTTGGTTTGGTCGACATCAAAGCATGATGTATATCTTGTTTCACATTACTCAATTGTTCACTGGTCTTCATTA AATTCTAAAAGATCTGAAGTCTTGAATGTATCAGGGCATGTAACTCCGTGTGAGAAACACCCAGGAAGCCTCTTGGAGGG TTTCACACAGACACAAATAAGTACACTGGCTGTACGAGATAACTTGTTAATTGCTGGAGGCTTTCAAGGGGAACTTATTT GCAAGTACTTAGATAGACCCGGGGTTAGCTTTTGTTCCCGAACTACTTATGAGGACAATGCAATTACTAATGCTGTTGAG ATTTATGACAATCCCAGTGGAGCTGTTCATTTCATGGCTTCAAACAATGACTGTGTTGTTAGAGACTTTGATATGGAGAG ATTTCAGCTTTCAAAGCATTTCAGCTTTCCTTGGCCAGTAAATCATACTTCATTGAGCCCTGATGGGAAACTAATTGCAA TTGTTGGAGACAACCCAGAATCGATACTGGTGGATTCTCAAACTGGAAAGACTATGGGATTTTTATGCGGACACTTGGAT TATTCATTTGCATCTGCATGGCATCCTGAGGGCCGTATTTTTGCCACTGGGAACCAAGACAAAACATGTCGCGTTTGGGA TGTTCGAAACTTGTCGAAGTCTGTTGCTGTTCTTAAGGGAAACCTTGGAGCTATACGCTCGATACGGTTCTCATCTGATG GACAGTTCATGGCAATGGCTGAGCCAGCTGACTTTGTGCATGTATATGATGCAAAGCATGGGTTTGAGAAGGAGCAGGAG ATTGATTTTTTTGGGGAGATCTCTGGTGTATCTTTTAGCCCTGACACAGAATCACTTTTTATTGGTGTTTGGGATCGCAC CTATGGAAGCCTTCTTCAGCTCAATCGGCGCAGAAACAATATGTATCTCGACTACTTGTAA
Protein sequence (LotjaGi6g1v0279100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQFNGDEMEYAADENEMAEVEDDVYFRGRGYGESDSDDDEDDEYDPLENRITDTTAAEARRGKDIQGIPWDRLSISREK YRQTRLEQYKNYENIPQSGELSEKECTPTDKGGMYYDFWQNTRSVKSTILHFQLRNLVWSTSKHDVYLVSHYSIVHWSSL NSKRSEVLNVSGHVTPCEKHPGSLLEGFTQTQISTLAVRDNLLIAGGFQGELICKYLDRPGVSFCSRTTYEDNAITNAVE IYDNPSGAVHFMASNNDCVVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLIAIVGDNPESILVDSQTGKTMGFLCGHLD YSFASAWHPEGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFSSDGQFMAMAEPADFVHVYDAKHGFEKEQE IDFFGEISGVSFSPDTESLFIGVWDRTYGSLLQLNRRRNNMYLDYL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 47 | 47 | - | – | |
| PANTHER | 35 | 444 | 410 | 1.2E-283 | – | |
| PANTHER | 35 | 444 | 410 | 1.2E-283 | – | |
| SUPERFAMILY | 191 | 427 | 237 | 5.68E-30 | ||
| Gene3D | 224 | 442 | 219 | 1.1E-28 | ||
| SMART | 267 | 305 | 39 | 390.0 | ||
| SMART | 308 | 347 | 40 | 2.5E-5 | ||
| Pfam | 312 | 347 | 36 | 5.2E-4 | ||
| ProSiteProfiles | 315 | 356 | 42 | 12.747 | ||
| ProSiteProfiles | 315 | 399 | 85 | 14.819 | ||
| SMART | 351 | 390 | 40 | 0.53 | ||
| Pfam | 363 | 399 | 37 | 1.2E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0279100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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