Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0285100 |
| Transcript ID | LotjaGi6g1v0285100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein, putative; TAIR: AT3G07810.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|G7IP95|G7IP95_MEDTR RNA-binding (RRM/RBD/RNP motif) family protein; Found in the gene: LotjaGi6g1v0285100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60150631..60155205) extracted from Lotus japonicus Gifu genome v1.2.
AATTGATTCTATTTATTTTCCATACATATCTCTTGCTCTGTGTGATACACGGTTGCCACATTCATTATATATATTTATCT GCTTGAATCAATTCAATCGCATTTCATTTGTAACACAAAAACCACAACAACAAGAGGGCCTCTCGCCCTCTCTCCCTATT ATGCCTTCTCTCAGATCTTAGATTTCATCAATTTCTTCATCTGGGTTGTCTTCATTTGGTAATGCTTTTTTTTTTCATCA TTCATCATCGCATATCGTTTTTGTGATTTGTTCATGTTGAACATGTTAAAGTTTGATTCTTTTTGTAATTTTAGATTGTG GGTCGATCCGTTTTTGATTCATTCATCAAAGCTTCTATGGTTATTACTAGGATTGTTGACTCTTGTTTGACGAATGGAAT ATCATCGTGTTTTTTTGTAAAATTTTCCCAAAAAAACGTAGATTCAGTTTTCTGCATGTTTTTTTCATCCGGGTTTCAAT CAGCATTACGATGTTATGTGTTTGATGATTGTTGTTTTGCCAGCTAGGAAACGAGTACGAGGTTTTTTGTTTGTACGGAG ATTGTAATTTGTAATTTTGTATGAGTTGATGATTGGATCCGATTGTTCCAATATGTTTCTTTTGTTGTTCCTACTTTTGG CATGTGATTCGATGGTTGTTGACTTGTTGGAGTAGAATTATGCATTTGGATGATTTATTTTATGGGTGTGAGTTGTTGTT AGAATTAGAAGTGATTGTTGAATTTGTGGGGTGTGGTGCAGGATGGAAATGGACCCTGGCAAGCTTTTCATTGGTGGGAT TTCCTGGGACACAAATGAAGAACGACTCAGACAGTATTTCCAGAACTTTGGAGATGTGGTTGAAGCTGTGATAATGAAGG ATCGCACCACGGGGCGTGCCCGTGGTTTTGGATTTGTTGTTTTTGCCGATCCTTCTGTTGCTGAGCGAGTTGTTATGGAA AAGCATGTCATTGATGGTAGAACTGTAAGTTTGTCCTTCTTTGTTTATATATTTATGTTTATTTAGAGACATCCATGCTA AATCCTCAGTGTTGTATTGCTTTCTATTGTGACAAAGTGAATCGGGATGTGCTGTCCCTCAATAAGAAAGATTGAAACAA GTGAATTTATTATTTCACTTGAAGATTCAGATGAACTTTTCTGTATTTGATGATACAATACTGATTTGGAGAGGCATAAA TTTGATTAGTTTTCAAAGTTTTGGTTTGCTTGCATGAAATTGAGCATTATATATTTGAATCGGATTCAATGTAGCATATT CATGGCAGTGTTGTCAAATCGCGATTGCGGACCATCTTGGTGAGGCAAAAATCCGCTATTTCGGCTGCTATTTGGCGGTG AATAGCGGGCTAATAGCGGCGTCGCGATTAGCCAAAAATCCGCTACGCTATAGCCGCTATTTGATAACACTGATTTATGG TGATACAAGTTTATATGTTTTGAATCATTGAGGCAATGACAAATGGTAGTTGGCATGAATCATGATATCAGTGGGAAGAA AAATATGGTAGTCTGTAGAGCACAATAACATAAATTTGGACTAATAGATTTGACTAAAGCAGACAGAGAGTTTTTTCTAT CCATTGTCCTTCATATCAAAAGCTCAACAATGACAAGTAAAGTAAAACTGAAGTGGGCCTGTAAGCTTCTTTTTTTGGGG GGTAGGGAACTAGGGATTAATATGAAGAAGAAACATGGAAAGGACGATACAATTTAGTCTCTATTTCCTATTAGTCCAAA TTGTGATCTAATCTCTAAGTATATAATTTGCAGTCTCCCTAACACATTCATTTACTTGAAATCCTGACCAGCAATCGTTC TTTCTCATAGATTCTATTAGTTTTTATAGTGGCCTGCTTATTTATAATTCAGACTAAGATGTTAAATTGAGTTTTATTGT CATGAATTCGACATGCAGGTGGAAGCAAAAAAGGCTGTCCCTAGAGATGATCAGAATGTTCTGAGCAGAAGCAACAGCAG CAGTCATGGGTCGCCAGTTCCTTCTCCTGTCCGCACAAAGAAGATATTTGTTGGAGGTCTACCATCCACAATTACTGAGA GTGATTTTAAGAACTACTTTGATCAGTTTGGAACAATTACAGATGTTGTCGTGATGTATGACCATAACACACAAAGGCCT AGAGGTTTTGGATTCATAACCTTTGATTCTGAGGAAGGAGTTGAGAAAGTTCTGTACAAAACTTTTCATGAACTGAATGG TAAAATGGTTGAGGTTAAGAGAGCTGTTCCCAAGGAATTATCTCCAAGTCCAAGTAGAGGCCAGTTAGGTGGATATAGTT ATGCTATGAGTAGAGTTGGTAGCTTTGCTAATGGTTTCACTCAGGGATATAATCCAGGCATGGTTGGAGGCCATGGACTT AGAATAGATGGTCGGTTGAGTCCGGTTACTGTTGGTCGTAGCGGATATCCTCTTTTGAGTCCTAATTATGGGTCAGAACT CAACTTTGAGCTACCATTGAGCCAAAATGAAAGTGCAAACTTTACATCTAACTTCGTCATAGGACGGGCGCTGAACTCTT CATACAATGGAAGTCCGAGCAGGTACAATAATGCCATGGGGTATGCTGGTTCAAGCATTGGCAACAATGCAACCATAAGT TCAAGTTCAATAAATCAAAATTTGTGGGGGAATGGGAATCTTTATGGTGCTACTAACCCTGCAACCTCTAATGCTTTTGT TGGTTATGGAAGTGAAAATTCAAGCATGGGTTCTCTTGGTGGTATTGGATCACTTTGGAGTTCCTCCCTTGGTAATAATC AAGCTGGAACTATTGGCTCTGGATATGGTAAGGGAAGTCTTAGTTATAGGTCCGGAGATGTGATTTTAGGGTCAAAAACA GTAGATTATGGAAGAAGCAGTGAAAGCACTGTTGCATCAGCTCCATTGTATACTTTATCAAATGGAAATTATGATGAGGC ATTCAAAGATACTTATGAAGCTGGGCCATTTTATCGTGACCAGACTTGGAGGTCATCAGCTTCAGAACTAGACGATTCTG GCAGTCTTGGTTTGGGTTTTGAAAATGCTGTTTCAGATTTAATGAGCAAAGGCTCGGGAGGTCACATCGGCGCTTATGCT GTTGCTAGTAGACAATCAAATAGAGGTAAAATGCCTTTCTTTTTTGAAATTGAAAAAAAAAGTAATATCCATCGGCTAAG CTTCTGTACATACCTTGTCATAGCTAGTTTGTTTCATGTTTAGAGTTTAAATTTGATTAAGGCTAAAACCAGTAAAGATT ACTAAAGCTCCATATTCTTTGTTTTATGTTATGCTGATTGTGGCTGTGTCCTCCAAAATCTTTGTTTATCACCCTACACA AAATGTGTGTCTATATGTGTGTATTCCCTAGTGAAGTAACTAATTTAATTAGGACATGTTTCAAAAATGCTGGTTATGTG AAGAGATTTTAACCATGCTATCATTATAGTTTGAATATGTTTGTTTGAACATGTGCTTCTATAAGTTCCTGATCTTAAAC TTTCCAAGTGCAGGGTGATAAACTAAGAGATATGACTTACTTGAATCAGAAAGTACGGCAATTCAAAGCTTGTCATGTAC TAATGTGCCTTTGAACATGTTTTGCTTCAGGAATTGCTGCTTAGGAAGGTTATGTTATGCTGTGGATGCTCCGACAGTTT CAGTGAGGTATTTCTGGTGCAGAAGGTGAATGAATGTGGAAAGCTTGAATCTTCTTGTTTCGAGATACTTGAATGCTTCT AATATTTCATTAGAGCCAGTAGGTTTGGCTGTGTTGAATAACCTGCGAATACAGAACACTTACAAGGGCTTTAATATAAG GATTGTGCTTGAGTGAAATATAGGTTTTTCTTTCTTTCAGGTTTTTGAGACTTGTAATCAGGTTATGGAGTTAGTCAGCA ATGTCATTTGATGCACACCTCCCACTATAGAGTAATACACAAAACAAGACTTCTCCTACATTTCTTTTTGTTATTCTGTT TTGGACACTTGAACCATGTTGCCAGTGTGGGCCAGAATCTTTTTATTATCTCCTGTTCAGTGTTTTGATTTTTCAGAAAC TGTAAAAATACATGGTTAATTTCTCCATGATATTGTCATGGGATGTTCATCTAGTTTCTTTAAAATAATAGCTGATTCGT CTATGGAACACATTTGTGTTTTTTTACTTGTTGGCGTGTAAGCTTCATTTGGGAATTGTGCATGATAGATTTCCTACTAT AACAAACCTTCCTTTCTCTCAGGGAGTTATTCATGATTTATTTATTGTTTATACAGATCATATGTAAAGTCTCTCTAAAC ATCATAAGTACCATTTTCAAATAAAAAGGAGCTTTATTTAGCATAAATTTTGGTCCTCTTAGGTCAAAACCCTCCCCATG CCTCTCCATCTGAATTTAGATCGTTGGATTTGAATACTTGTGTGTGATGTGTGTTGTTTTTTGAACCATTAATCTTGATA GAGTTTGGCTTGAGAAAGATAGATTGGATTTTTTGTTGGAGATGATGCACACTAACCTTGTTACTTGTTAGTGTAACTAT TCCTTTCCTCTTAGT
CDS sequence (LotjaGi6g1v0285100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATGGACCCTGGCAAGCTTTTCATTGGTGGGATTTCCTGGGACACAAATGAAGAACGACTCAGACAGTATTTCCA GAACTTTGGAGATGTGGTTGAAGCTGTGATAATGAAGGATCGCACCACGGGGCGTGCCCGTGGTTTTGGATTTGTTGTTT TTGCCGATCCTTCTGTTGCTGAGCGAGTTGTTATGGAAAAGCATGTCATTGATGGTAGAACTGTGGAAGCAAAAAAGGCT GTCCCTAGAGATGATCAGAATGTTCTGAGCAGAAGCAACAGCAGCAGTCATGGGTCGCCAGTTCCTTCTCCTGTCCGCAC AAAGAAGATATTTGTTGGAGGTCTACCATCCACAATTACTGAGAGTGATTTTAAGAACTACTTTGATCAGTTTGGAACAA TTACAGATGTTGTCGTGATGTATGACCATAACACACAAAGGCCTAGAGGTTTTGGATTCATAACCTTTGATTCTGAGGAA GGAGTTGAGAAAGTTCTGTACAAAACTTTTCATGAACTGAATGGTAAAATGGTTGAGGTTAAGAGAGCTGTTCCCAAGGA ATTATCTCCAAGTCCAAGTAGAGGCCAGTTAGGTGGATATAGTTATGCTATGAGTAGAGTTGGTAGCTTTGCTAATGGTT TCACTCAGGGATATAATCCAGGCATGGTTGGAGGCCATGGACTTAGAATAGATGGTCGGTTGAGTCCGGTTACTGTTGGT CGTAGCGGATATCCTCTTTTGAGTCCTAATTATGGGTCAGAACTCAACTTTGAGCTACCATTGAGCCAAAATGAAAGTGC AAACTTTACATCTAACTTCGTCATAGGACGGGCGCTGAACTCTTCATACAATGGAAGTCCGAGCAGGTACAATAATGCCA TGGGGTATGCTGGTTCAAGCATTGGCAACAATGCAACCATAAGTTCAAGTTCAATAAATCAAAATTTGTGGGGGAATGGG AATCTTTATGGTGCTACTAACCCTGCAACCTCTAATGCTTTTGTTGGTTATGGAAGTGAAAATTCAAGCATGGGTTCTCT TGGTGGTATTGGATCACTTTGGAGTTCCTCCCTTGGTAATAATCAAGCTGGAACTATTGGCTCTGGATATGGTAAGGGAA GTCTTAGTTATAGGTCCGGAGATGTGATTTTAGGGTCAAAAACAGTAGATTATGGAAGAAGCAGTGAAAGCACTGTTGCA TCAGCTCCATTGTATACTTTATCAAATGGAAATTATGATGAGGCATTCAAAGATACTTATGAAGCTGGGCCATTTTATCG TGACCAGACTTGGAGGTCATCAGCTTCAGAACTAGACGATTCTGGCAGTCTTGGTTTGGGTTTTGAAAATGCTGTTTCAG ATTTAATGAGCAAAGGCTCGGGAGGTCACATCGGCGCTTATGCTGTTGCTAGTAGACAATCAAATAGAGGAATTGCTGCT TAG
Protein sequence (LotjaGi6g1v0285100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKA VPRDDQNVLSRSNSSSHGSPVPSPVRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEE GVEKVLYKTFHELNGKMVEVKRAVPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVG RSGYPLLSPNYGSELNFELPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGYAGSSIGNNATISSSSINQNLWGNG NLYGATNPATSNAFVGYGSENSSMGSLGGIGSLWSSSLGNNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSSESTVA SAPLYTLSNGNYDEAFKDTYEAGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSKGSGGHIGAYAVASRQSNRGIAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 89 | 89 | 4.4E-25 | ||
| SUPERFAMILY | 4 | 99 | 96 | 6.18E-26 | ||
| ProSiteProfiles | 6 | 82 | 77 | 17.848 | ||
| SMART | 7 | 78 | 72 | 1.2E-23 | ||
| CDD | 8 | 78 | 71 | 9.13089E-38 | – | |
| Pfam | 8 | 74 | 67 | 2.0E-16 | ||
| PANTHER | 11 | 327 | 317 | 1.0E-138 | – | |
| PANTHER | 11 | 327 | 317 | 1.0E-138 | – | |
| MobiDBLite | 81 | 104 | 24 | - | – | |
| MobiDBLite | 86 | 102 | 17 | - | – | |
| Gene3D | 90 | 202 | 113 | 1.2E-25 | ||
| SUPERFAMILY | 104 | 205 | 102 | 2.28E-27 | ||
| CDD | 106 | 185 | 80 | 2.90996E-48 | ||
| ProSiteProfiles | 108 | 185 | 78 | 18.564 | ||
| SMART | 109 | 181 | 73 | 7.7E-25 | ||
| Pfam | 110 | 168 | 59 | 6.1E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi6g1v0285100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…