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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0285600 |
| Transcript ID | LotjaGi6g1v0285600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter; TAIR: AT4G16480.1 inositol transporter 4; Swiss-Prot: sp|O23492|INT4_ARATH Inositol transporter 4; TrEMBL-Plants: tr|K7LB72|K7LB72_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0285600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60288838..60291693) extracted from Lotus japonicus Gifu genome v1.2.
CTCCAAGTGAGTTTAAGTATACTCATTCCTACCATCTTTATATCAGCCTCTCTTCCATCATAATCAATTTTAAAATTCAG AATGTGTCACAACATTTTCTCGCCAGAATTGACTGTGGCTTGAGAACCAATTGTAGAAGAGTTTCTAAAGATGCAAAGTT ATCTTCATATTGGAGCTAGTTGACATGGTTATTTTATGATCTATTGTTGTGCAGGAAACCATTGTTAGCATGGCTGTTGC TGGAGCTATAATTGGTGCTGCATTAGGAGGGTGGATAAATGACAAGCTAGGGAGAAAGAAATCTATTTTGTCTGCTGATG TTGTGTTCATTCTAGGTGCATTAGTTATGGCTATTGCTCCTGCTCCATGGGTTATCATTGTTGGAAGGGTTTTGGTTGGT TTGGGAGTTGGTGCAGCTTCCATGACTGCGCCTCTATACATCTCTGAAGCTTCCCCTGCTAAGATCAGAGGAGCTTTAGT CAGTATAAATGGACTTCTTATCACCGGCGGTCAATTTCTGTCTTACCTCATCAATTTGGCATTTACCAAGGTTTGCAAGA TTGGAACATTTGTAGCTATTCAAGTTCATTAAACTTGAATGACATAACTGAAATTGATTTGTCTCAGGTGCCTGGAACCT GGCGTTGGATGCTTGGGGTGGCAGGAATTCCCGCCTTGATACAGTTAATATTGATGTTGTCCCTTCCTGAGTCACCTAGA TGGCTCTACAGACAGGTTTGTCAAATATAAATTTTGAATTTGTGTACATTCTTCTTGAGAGTTTCTTAATCTACAGAAGA GTTTATTTTCTTAATGTTACAAGATAATTTCTTAAATATTTTTGTTGTTAAATGAACTGAGCTATGAATTGATGTCAGTC TTATGCTTGTTCACAGTTAAAAAGTTTTAACTTTTCTTATATCTCTCCTGTTTAATGGATAATGTCCTGGTTATTTCTGA GATGCCTCAAGATGCTGTGTGTTTAGTTGCAATGTGTATAAATTGCAACGAAATTGTCAGCTATTTCCAGGAGTCTTCAC TTTACATTAAGCTTTACTTCATGTCTTAACTATGATAGCATGTTTGTATCAGTTTCTCTTTCCTTATAATCCTCTCTGGC ACCCAGAACCTACTCACATAAGCTTCTCTCTGAATTGATTTTGGAGTTAATTGTAGAAGGTTTTCTAAACATATTCTGAA TGATGAATGTAAAACACAAACAAGTCCTTAGTTTTCTTTTTCATGAGACTTGACTCCTCAGATAGCAATTTCTTATATTT CATGTCTGCAATTTATGAATGATCAAGAGTAACTTCTCAACTTCAGTCCTTTAATTATCTTTTTGGTTATTTGACTCATC AATCATTCTTTGGAGCCAATTTCATCTATACTGCTGAGTTTCTATTAACCAGAACAATGTCGAGGAGGCAAGGCGCATTC TGTCAAAAATCTACCGTCCTGATGAAGTTGAAGAGGAGCTGAAAGCCATGCAAGAATCCATTGAATTAGAGAAAGCAGAG GAAGGCTTAACCGGGCATAGTCTTGCACAGAAACTAAAGGGTGCCTTGTCTAACAAAGTAGTTCGAAGAGCGCTTTACGC AGGTATCACAGTCCAAGTTGCTCAGCAGATTGTTGGTATTAACACAGTCATGTATTACAGTCCAACAATCGTTCAGTTCG CCGGAATTGCCTCCAACTCCACAGCACTTGCACTTTCCCTGGTTACTTCTGGTCTGAATGCTGTTGGCACTATCTTGAGC ATGGTTTGCATTGATAGATTTGGAAGGAGAAAGTTGATGCTCATCTCCATGATAGGCATCATTGTGTGCCTTGTGACTTT AAGTGTTACATTCTACCAAGCAGCTCACCATTCTCCTGCCATTAGTAACAAGGATAGCCTTAGCTTTGGGGCAAACTCTA CATGCCATGATTACACAAAGGCCCCAGATTTCTCCTCATGGAACTGTATGCATTGTTTGCAAGTAGATTGTGCCTTTTGT GCCAGAAGCGAGAGTGAAGTAAGTTCTACTAAATTCTGTGCATGCCTCTTTTATAGCATGTTTGGATCAACTTCTTTTTC CTTAGAATGAATTATGAAGCCTAAAACAATAAGCTTCTCATACTACAGATATCATATATCACAGCTATTACTTAATTCTA TTCTCTTCTTTTCTTTCACTTTCTATTTGAGTGTCCACACACTCATGCATGACCACCATCCTTCCTTTTCAAGAATTTAG GTACTCATATTGTCATGTTTTGCTCAACCTTTTCAAAGAACATGTAAAAACCTGAATTTTGTCCAAATTAGAGACAGTTT TGATTAAACTATAGAGTTAATTCTGTCTCTTTCTATCTGTTATCCAGTTTCTTCCAGGAGCATGCTTGGCAGCAGAAAAG GGTATCAGAGGCGCATGTCGAGCACAAAATCGTGTATGGTTTTCAAAGGGTTGTCCAAGCAAAATTGGGGTCCTTGCAGT TGTGATCCTTGGATTGTATATCCTAGCATATGCTCCTGGAATGGGAACAGTGCCTTGGGTTCTGAATTCTGAGATTTATC CATTGAGGTTCAGAGGTCTAGGTGGAGGTATAGCAGCAGTTTTCAATTGGTGTGCTAATCTACTTCTCAGTGAATCATTC TTGAGCATGGTAAAAGCTCTAGGCACTTCTGGCACATTCCTCGTCTTTGCCGGCTTCTCCTTGATTGGCCTTGTATTCAT CTATGCATTGGTGCCTGAAACCAAAGGCCTTCAGTTTGAGGAGGTCGAGAAATTGCTTCAGAAAGGCTTCAAACCTTTCC CCTTTGACAGGAAAAAGGAGGAAGATAACAAAGCGAAAAAACAAGACTTGGCTTAA
CDS sequence (LotjaGi6g1v0285600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTTGCTGGAGCTATAATTGGTGCTGCATTAGGAGGGTGGATAAATGACAAGCTAGGGAGAAAGAAATCTATTTT GTCTGCTGATGTTGTGTTCATTCTAGGTGCATTAGTTATGGCTATTGCTCCTGCTCCATGGGTTATCATTGTTGGAAGGG TTTTGGTTGGTTTGGGAGTTGGTGCAGCTTCCATGACTGCGCCTCTATACATCTCTGAAGCTTCCCCTGCTAAGATCAGA GGAGCTTTAGTGCCTGGAACCTGGCGTTGGATGCTTGGGGTGGCAGGAATTCCCGCCTTGATACAGTTAATATTGATGTT GTCCCTTCCTGAGTCACCTAGATGGCTCTACAGACAGAACAATGTCGAGGAGGCAAGGCGCATTCTGTCAAAAATCTACC GTCCTGATGAAGTTGAAGAGGAGCTGAAAGCCATGCAAGAATCCATTGAATTAGAGAAAGCAGAGGAAGGCTTAACCGGG CATAGTCTTGCACAGAAACTAAAGGGTGCCTTGTCTAACAAAGTAGTTCGAAGAGCGCTTTACGCAGGTATCACAGTCCA AGTTGCTCAGCAGATTGTTGGTATTAACACAGTCATGTATTACAGTCCAACAATCGTTCAGTTCGCCGGAATTGCCTCCA ACTCCACAGCACTTGCACTTTCCCTGGTTACTTCTGGTCTGAATGCTGTTGGCACTATCTTGAGCATGGTTTGCATTGAT AGATTTGGAAGGAGAAAGTTGATGCTCATCTCCATGATAGGCATCATTGTGTGCCTTGTGACTTTAAGTGTTACATTCTA CCAAGCAGCTCACCATTCTCCTGCCATTAGTAACAAGGATAGCCTTAGCTTTGGGGCAAACTCTACATGCCATGATTACA CAAAGGCCCCAGATTTCTCCTCATGGAACTGTATGCATTGTTTGCAAGTAGATTGTGCCTTTTGTGCCAGAAGCGAGAGT GAATTTCTTCCAGGAGCATGCTTGGCAGCAGAAAAGGGTATCAGAGGCGCATGTCGAGCACAAAATCGTGTATGGTTTTC AAAGGGTTGTCCAAGCAAAATTGGGGTCCTTGCAGTTGTGATCCTTGGATTGTATATCCTAGCATATGCTCCTGGAATGG GAACAGTGCCTTGGGTTCTGAATTCTGAGATTTATCCATTGAGGTTCAGAGGTCTAGGTGGAGGTATAGCAGCAGTTTTC AATTGGTGTGCTAATCTACTTCTCAGTGAATCATTCTTGAGCATGGTAAAAGCTCTAGGCACTTCTGGCACATTCCTCGT CTTTGCCGGCTTCTCCTTGATTGGCCTTGTATTCATCTATGCATTGGTGCCTGAAACCAAAGGCCTTCAGTTTGAGGAGG TCGAGAAATTGCTTCAGAAAGGCTTCAAACCTTTCCCCTTTGACAGGAAAAAGGAGGAAGATAACAAAGCGAAAAAACAA GACTTGGCTTAA
Protein sequence (LotjaGi6g1v0285600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVAGAIIGAALGGWINDKLGRKKSILSADVVFILGALVMAIAPAPWVIIVGRVLVGLGVGAASMTAPLYISEASPAKIR GALVPGTWRWMLGVAGIPALIQLILMLSLPESPRWLYRQNNVEEARRILSKIYRPDEVEEELKAMQESIELEKAEEGLTG HSLAQKLKGALSNKVVRRALYAGITVQVAQQIVGINTVMYYSPTIVQFAGIASNSTALALSLVTSGLNAVGTILSMVCID RFGRRKLMLISMIGIIVCLVTLSVTFYQAAHHSPAISNKDSLSFGANSTCHDYTKAPDFSSWNCMHCLQVDCAFCARSES EFLPGACLAAEKGIRGACRAQNRVWFSKGCPSKIGVLAVVILGLYILAYAPGMGTVPWVLNSEIYPLRFRGLGGGIAAVF NWCANLLLSESFLSMVKALGTSGTFLVFAGFSLIGLVFIYALVPETKGLQFEEVEKLLQKGFKPFPFDRKKEEDNKAKKQ DLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 84 | 84 | 2.6E-202 | – | |
| ProSiteProfiles | 1 | 447 | 447 | 39.069 | ||
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 84 | 84 | 2.6E-202 | – | |
| Pfam | 2 | 84 | 83 | 3.8E-26 | ||
| SUPERFAMILY | 3 | 456 | 454 | 4.45E-56 | ||
| CDD | 12 | 445 | 434 | 1.39606E-124 | – | |
| Phobius | 25 | 43 | 19 | - | – | |
| TMHMM | 26 | 48 | 23 | - | – | |
| Phobius | 44 | 49 | 6 | - | – | |
| PRINTS | 50 | 69 | 20 | 1.1E-20 | ||
| TMHMM | 50 | 72 | 23 | - | – | |
| Phobius | 50 | 70 | 21 | - | – | |
| ProSitePatterns | 55 | 80 | 26 | - | ||
| Phobius | 71 | 89 | 19 | - | – | |
| PANTHER | 85 | 466 | 382 | 2.6E-202 | – | |
| PANTHER | 85 | 466 | 382 | 2.6E-202 | – | |
| Pfam | 87 | 270 | 184 | 9.6E-45 | ||
| TMHMM | 87 | 109 | 23 | - | – | |
| Phobius | 90 | 109 | 20 | - | – | |
| Phobius | 110 | 178 | 69 | - | – | |
| TMHMM | 179 | 201 | 23 | - | – | |
| Phobius | 179 | 202 | 24 | - | – | |
| PRINTS | 190 | 200 | 11 | 1.1E-20 | ||
| Phobius | 203 | 216 | 14 | - | – | |
| TMHMM | 216 | 238 | 23 | - | – | |
| Phobius | 217 | 237 | 21 | - | – | |
| ProSitePatterns | 235 | 251 | 17 | - | ||
| Phobius | 238 | 248 | 11 | - | – | |
| TMHMM | 247 | 269 | 23 | - | – | |
| Phobius | 249 | 270 | 22 | - | – | |
| Phobius | 271 | 353 | 83 | - | – | |
| Pfam | 352 | 457 | 106 | 4.7E-26 | ||
| Phobius | 354 | 380 | 27 | - | – | |
| TMHMM | 354 | 376 | 23 | - | – | |
| PRINTS | 359 | 380 | 22 | 1.1E-20 | ||
| Phobius | 381 | 391 | 11 | - | – | |
| PRINTS | 382 | 394 | 13 | 1.1E-20 | ||
| TMHMM | 389 | 408 | 20 | - | – | |
| Phobius | 392 | 413 | 22 | - | – | |
| Phobius | 414 | 424 | 11 | - | – | |
| TMHMM | 418 | 440 | 23 | - | – | |
| Phobius | 425 | 443 | 19 | - | – | |
| Phobius | 444 | 483 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0285600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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