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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0289700 |
| Transcript ID | LotjaGi6g1v0289700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UBX domain-containing protein, putative; TAIR: AT4G04210.1 plant UBX domain containing protein 4; Swiss-Prot: sp|Q8RWU7|PUX4_ARATH Plant UBX domain-containing protein 4; TrEMBL-Plants: tr|A0A151T6S8|A0A151T6S8_CAJCA UBA and UBX domain-containing protein family; Found in the gene: LotjaGi6g1v0289700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60693824..60697436) extracted from Lotus japonicus Gifu genome v1.2.
ATTAAATTGTCTTCTCTGTCTCTCTCTCTTATTTCTCTGTCTCTCTCAGTTTTGTGAAACCAAATCAATGGCGTCACGCG ACACGAAGAAGCCATCAAAGCCCTCGACCAGTCGAGCAGGCGGAATCCGCACGCTCTCCGACCTCAACCGCCCCTCCGCC GATTCCGACAGCGACTCCGATGGCCCTCAGGAGTATTACACCGGCGGCGAGAAGAGGTTCTCTTCTCACTCAACTTTCTG AAATCATCTTCATGTTTTGTTGATTCTATTGTATTAGGTAGTCGCTGTTGCTTCTATTCATGTAGTGATGCTTCAGTTGT TTGAACTTCGTATACCTTTCATGTTAAGAGGTATTGGTATTGGTATTGGTAATGGTAGGTAGGGTAATTCTGAGGGAATC AAACCAAATTTAATATACAAATTAGAAGAAAAGTAAAATCCCCAATAATTTAGTTTTTGATCGAGCTCAATGGCGTAGTA TGATCCATGTAGCGAACCTCGCTTAGTGAGATAAGGCTTTTGTTGTTGTTCTTAGGAAGTAGCTTAGTTCCTTAAGATCT GTTTGTTGAGGTTGTTTTTGGAAATCAGAGGTACAGATTTTGCAGACAAGCTTCATTTTGTCTTCTTATGTTTGGGTATC GAATATCCATGTTGTTCTATTTAGCTTGTTATGATTGTGGATTCTGATTGCTTTGATGTGTCTTGTTTGTTGATTCTTTC CCTCAGTTGCTCTTGTGTTCACTTGATTGATGGCCCTTTACTTTTGTACATACTGGCTACTGCATTGATATTACAAAAGA CATTCCTCAAATAGAGGCTAGTGTTACATTTCAGGTTATTCATCAGTTTTGGGCATTTGAAAACTTATTTAACGTGATAA AATCATGCTTAGATGTCAGGCTTTTGAAAACCCATTTAGATCCAACTCAATTTTTTAAAAATGGTAGGGGGAAAATCTCA AAGCAATGTGTTTTTTTTTATTTCTTGATTTCCCTGTGTTCAAAATTCAAACAAATCTTTTTGCTCTAGCTAGACAACTA AAAGGGTAATACTAGAAGCTAAATTTGTAATCCACTTCACTCAGGTAATTTCATCATTAGTTTCAAACAAAGGAATAGGG CTCCTCTCCATTCCCTAATTAAAAGTATCAAGCAATAGTGTCGCACCTTTTTCATGCAATCCATTTCCAAACCATTCCAC TTCATCCCCTTCAAAATTTACAAGCATAGACTTATGCTTAACTTATATCCTTCACTTTTCTAGAACCTCAAGCACCTATT ACTGAAAAAGTCACTTTCGCTACCTTGATTGAAAGTATTTGAATCTTGTTTATTTAAAGTTGGCTTCTAAAGGTGTATAT ACACATGTTGATTAAACAAGGTTAGCACACCCGCAATCATGGTTTCTAAACTTCCAAGTTTAATGTCCCTACACAGTTTA CTGGTCTCACTAATTTTACAGAAGATTTACAAATGGACACATCTATTTTCTGTTGTTTTTGTGTTTTGGTACTCCTCTTT TGGTTTTTTGACAATTGTACATTATATATTTTCCAGTGGAATGCTTGTCCAGGACCCTACTAAAGGAAATGATGTCGATG CAATTTTCAATCAAGCTAGGCAACTCGGAGCTGTAGAAAGGCACCTTGATCAGCTTCAGGAACCTCCAAGGTCAACTAGC TTTACTGGAACTGGCAGGGTACTCTCAGGGGAAACTGTGCAATCAACTTCGCAGCAACCTGAGTCTGTTGTTCATAACAT TGTTTTTTGGAGTAACGGTTTCACCGTAAATGATGGACCTTTGAGGAGATTGGACGATCCTGAAAACGCCTCATTTTTAG AGGTAGCTGTTTTTAAGATTCTGATTCTGTTAATGGATTGGAGGGTGAAAAGTATTGAAAGTAATGAGGTTGCGTACATG AATACTCGAATAGGAAAATCCAGAGTTATGGAAGATCGAGTATTTTGCGCTAATTATTCAGTAATGAAGTATCTCAACAA AATTTATCTAATAAATTCACTTTTTTATTTAGAAACCTCAGCATATTTGGTTAGTGTTTTGTAAGTTGCTTTCACAATAT CTTGACGAGGCTATGTAAGAATGTCCCAGAAATGTATATAGGCTGGCTACCATTACCTTCTTGGTTAACATCGATGTTTT CACTGTGTTTAATATTTGCCATTTTTGAATGCAGAGCATAAAAAAATCTGAATGCCCCAAAGAGCTTGAACCTGCAGATA GGAGAACATCTGTAAATGTTAATCTCATAAGAAGGAACGAGAACTATCCTGTGAGTTATCTGTTTGAGTTATTTGGTTTG TCTCTATCCCATTTACTGTGAAGTCAGATGAATCTGAACTTAGTTGGCTTTGTCTACTAGTATTGGAGCTTTAAACTTTT GCATTTTGAAATGCAATCCAGGTCCATTGTCGTGCAAAATTACTATATCTGAAATCACATCACTATGTGAGAAATATAAG TGCATTTTTTGTTACACTTGCAGGAACCCAAAAAGAGCCATGTTCCGTTTAAGGGAGTGGGAAGAACTCTAGGAAGCAGC TCTGCTTCAACGGCACCTGAGCCAACTGTTGCCTCAGCACCTTCCAACTCAGCTCCTTCCCTTTCTTCTGGCTTGGCGGT TGATCAGTCATTGCCATCAACCTCAATACAACTCAGGTTAGCTGATGGAACGCGCTTGGTATCGCATTTTAATTATCACC ACACGATCAGCGACATCCGAGCCTTCATTGATGCATCCAGACCTGGGGGTCAGCAGAATTATCAACTTCAGATGATGGGC TTCCCCCCAAAGGTTCTAACTGATGAAAATCAGACTATAGAACAAGCAGGACTGGCAAATTCAGTTGTCATGCAGAAATT TTAGACATTGCTGCTTCATGGCCATTTCTCATTACTGGCTATAAATGCTGCATAAAAATTATCTGGTGTTATTGAGGTGA GCTACTGTTATTAACAAAAACAAATAGGAATCCGCATGTGTTGAGGGTATATTTATTTGCTTTATGTCGATCAAGCTTTG TCAAGTACTGTATTATTTGCTTTATTATGATCAGTTTATAATGGCTCAGTTTTGGACCTAATTCTGTGTTACGATTTTGT AGAGTCTTTGTACTAGTTGAGCCTAATAACTTAATTTGGTAATATATTGAACACTATGAAATGTGTTGGAAAAAGAACTT TGAAATGTAGGATAACCCTTACCTGTGGTTATATATCTTCTTAATAACCAAAATCTGTGGCTATTGGGCTTGCAATTTTT TATGATTACAATGTCAGCCCACTGAAATCTTGGTTCATTGCCATTGGTAACTCTATGTGAAATAGTACTATGTTATTCCT TCACGGAATAGTCCAATTCCATTCGCAGTGGCATGACATGACATGAGCTAGACAAGAGGGGCAAAAAAACTTTAAAACAT CAAACAAACATGTTGCAGAAAATCAACAAATGCTACTCCAATTAAGTGGATGCAATTATGAAAAGCCAACAATAAATTCA CTTATTGCGAGTCCAATAATGTAAATCAAATCCTCAATGTTTCCTTATTCAAATTGGACACAGATTAGCATTTCAATTGG AACAAAACTAGAG
CDS sequence (LotjaGi6g1v0289700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCACGCGACACGAAGAAGCCATCAAAGCCCTCGACCAGTCGAGCAGGCGGAATCCGCACGCTCTCCGACCTCAA CCGCCCCTCCGCCGATTCCGACAGCGACTCCGATGGCCCTCAGGAGTATTACACCGGCGGCGAGAAGAGTGGAATGCTTG TCCAGGACCCTACTAAAGGAAATGATGTCGATGCAATTTTCAATCAAGCTAGGCAACTCGGAGCTGTAGAAAGGCACCTT GATCAGCTTCAGGAACCTCCAAGGTCAACTAGCTTTACTGGAACTGGCAGGGTACTCTCAGGGGAAACTGTGCAATCAAC TTCGCAGCAACCTGAGTCTGTTGTTCATAACATTGTTTTTTGGAGTAACGGTTTCACCGTAAATGATGGACCTTTGAGGA GATTGGACGATCCTGAAAACGCCTCATTTTTAGAGAGCATAAAAAAATCTGAATGCCCCAAAGAGCTTGAACCTGCAGAT AGGAGAACATCTGTAAATGTTAATCTCATAAGAAGGAACGAGAACTATCCTGAACCCAAAAAGAGCCATGTTCCGTTTAA GGGAGTGGGAAGAACTCTAGGAAGCAGCTCTGCTTCAACGGCACCTGAGCCAACTGTTGCCTCAGCACCTTCCAACTCAG CTCCTTCCCTTTCTTCTGGCTTGGCGGTTGATCAGTCATTGCCATCAACCTCAATACAACTCAGGTTAGCTGATGGAACG CGCTTGGTATCGCATTTTAATTATCACCACACGATCAGCGACATCCGAGCCTTCATTGATGCATCCAGACCTGGGGGTCA GCAGAATTATCAACTTCAGATGATGGGCTTCCCCCCAAAGGTTCTAACTGATGAAAATCAGACTATAGAACAAGCAGGAC TGGCAAATTCAGTTGTCATGCAGAAATTTTAG
Protein sequence (LotjaGi6g1v0289700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRDTKKPSKPSTSRAGGIRTLSDLNRPSADSDSDSDGPQEYYTGGEKSGMLVQDPTKGNDVDAIFNQARQLGAVERHL DQLQEPPRSTSFTGTGRVLSGETVQSTSQQPESVVHNIVFWSNGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPAD RRTSVNVNLIRRNENYPEPKKSHVPFKGVGRTLGSSSASTAPEPTVASAPSNSAPSLSSGLAVDQSLPSTSIQLRLADGT RLVSHFNYHHTISDIRAFIDASRPGGQQNYQLQMMGFPPKVLTDENQTIEQAGLANSVVMQKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 61 | 61 | - | – | |
| PANTHER | 4 | 303 | 300 | 6.3E-143 | – | |
| PANTHER | 4 | 303 | 300 | 6.3E-143 | – | |
| MobiDBLite | 12 | 40 | 29 | - | – | |
| SUPERFAMILY | 105 | 199 | 95 | 7.59E-32 | ||
| SMART | 110 | 203 | 94 | 1.0E-47 | ||
| Gene3D | 113 | 175 | 63 | 2.6E-23 | ||
| ProSiteProfiles | 113 | 177 | 65 | 35.092 | ||
| Pfam | 118 | 191 | 74 | 9.9E-28 | ||
| MobiDBLite | 173 | 222 | 50 | - | – | |
| Gene3D | 178 | 303 | 126 | 7.3E-40 | – | |
| SUPERFAMILY | 186 | 301 | 116 | 9.73E-26 | ||
| MobiDBLite | 192 | 222 | 31 | - | – | |
| SMART | 224 | 302 | 79 | 1.4E-5 | ||
| ProSiteProfiles | 225 | 302 | 78 | 18.718 | ||
| Pfam | 229 | 301 | 73 | 1.4E-16 | ||
| CDD | 231 | 302 | 72 | 5.59977E-38 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0289700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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